Wall clock time and date at job start Tue Mar 31 2020 20:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50700 * 119.99928 * 2 1 4 4 C 1.30997 * 120.00017 * 179.97438 * 2 1 3 5 5 C 1.50704 * 119.99938 * 5.83342 * 4 2 1 6 6 C 1.50700 * 120.00262 * 185.82384 * 4 2 1 7 7 C 1.50697 * 109.47004 * 94.99970 * 6 4 2 8 8 O 1.21286 * 120.00075 * 0.02562 * 7 6 4 9 9 N 1.34770 * 120.00368 * 180.02562 * 7 6 4 10 10 C 1.47426 * 125.65256 * 179.72112 * 9 7 6 11 11 C 1.55131 * 104.72398 * 155.81734 * 10 9 7 12 12 H 1.09000 * 111.22594 * 279.17465 * 11 10 9 13 13 N 1.46908 * 110.90364 * 155.27563 * 11 10 9 14 14 C 1.46896 * 111.00136 * 92.97707 * 13 11 10 15 15 C 1.50691 * 109.47292 * 179.97438 * 14 13 11 16 16 O 1.21293 * 119.99931 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00148 * 179.97438 * 15 14 13 18 18 C 1.37100 * 120.00078 * 179.97438 * 17 15 14 19 19 H 1.07998 * 119.99937 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99991 * 180.02562 * 18 17 15 21 21 N 1.31406 * 119.99629 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00048 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47022 * 89.99701 * 22 20 18 24 24 H 1.48497 * 109.47271 * 209.99744 * 22 20 18 25 25 H 1.48501 * 109.47037 * 329.99673 * 22 20 18 26 26 C 1.55158 * 101.48404 * 37.29861 * 11 10 9 27 27 H 1.08993 * 110.72243 * 82.69618 * 26 11 10 28 28 C 1.53006 * 110.71635 * 205.96913 * 26 11 10 29 29 C 1.47023 * 125.64751 * 0.02796 * 9 7 6 30 30 H 1.08997 * 109.47257 * 355.68296 * 1 2 3 31 31 H 1.08996 * 109.47435 * 235.68144 * 1 2 3 32 32 H 1.09006 * 109.47108 * 115.68040 * 1 2 3 33 33 H 1.09002 * 109.47363 * 359.97438 * 3 2 1 34 34 H 1.09001 * 109.47262 * 120.00214 * 3 2 1 35 35 H 1.09000 * 109.46752 * 239.99651 * 3 2 1 36 36 H 1.08998 * 109.47192 * 93.86153 * 5 4 2 37 37 H 1.09003 * 109.46774 * 213.85926 * 5 4 2 38 38 H 1.09001 * 109.46950 * 333.85456 * 5 4 2 39 39 H 1.08993 * 109.47497 * 215.00600 * 6 4 2 40 40 H 1.09003 * 109.47064 * 335.01028 * 6 4 2 41 41 H 1.08999 * 110.36875 * 274.74709 * 10 9 7 42 42 H 1.08999 * 110.36913 * 37.06955 * 10 9 7 43 43 H 1.00904 * 110.99331 * 216.93062 * 13 11 10 44 44 H 1.09005 * 109.47188 * 299.99977 * 14 13 11 45 45 H 1.09008 * 109.47057 * 59.99610 * 14 13 11 46 46 H 0.96998 * 119.99859 * 0.02562 * 17 15 14 47 47 H 0.97007 * 119.99538 * 180.02562 * 21 20 18 48 48 H 1.08993 * 109.46720 * 174.97591 * 28 26 11 49 49 H 1.08999 * 109.47175 * 294.97274 * 28 26 11 50 50 H 1.08996 * 109.47132 * 54.97289 * 28 26 11 51 51 H 1.09002 * 109.88480 * 300.44140 * 29 9 7 52 52 H 1.09003 * 109.87843 * 61.45465 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1619 -1.1345 0.0005 5 6 1.4143 -2.4363 -0.1316 6 6 3.6631 -1.1378 0.1329 7 6 4.0394 -1.3338 1.5790 8 8 3.1737 -1.4589 2.4192 9 7 5.3377 -1.3700 1.9386 10 6 5.8444 -1.5487 3.3114 11 6 7.2707 -2.1320 3.1325 12 1 7.2375 -3.2051 2.9446 13 7 8.1106 -1.8304 4.2995 14 6 8.0629 -2.9239 5.2791 15 6 8.9348 -2.5797 6.4590 16 8 9.5371 -1.5272 6.4814 17 7 9.0454 -3.4415 7.4894 18 6 9.8391 -3.1285 8.5626 19 1 10.3754 -2.1913 8.5825 20 6 9.9535 -4.0172 9.6246 21 7 9.3006 -5.1573 9.6005 22 14 11.0343 -3.5906 11.0872 23 1 10.2290 -2.8667 12.1033 24 1 11.5768 -4.8382 11.6825 25 1 12.1565 -2.7276 10.6384 26 6 7.7640 -1.3627 1.8786 27 1 8.1459 -0.3799 2.1545 28 6 8.8292 -2.1693 1.1330 29 6 6.4833 -1.2316 1.0275 30 1 -0.3633 1.0247 0.0774 31 1 -0.3634 -0.5794 0.8487 32 1 -0.3634 -0.4454 -0.9262 33 1 1.5521 2.1336 -0.0005 34 1 2.8871 1.3629 0.8900 35 1 2.8871 1.3628 -0.8900 36 1 1.3840 -2.7332 -1.1799 37 1 1.9208 -3.2067 0.4498 38 1 0.3973 -2.3105 0.2400 39 1 4.0787 -1.9496 -0.4639 40 1 4.0612 -0.1865 -0.2202 41 1 5.8863 -0.5898 3.8281 42 1 5.2148 -2.2490 3.8601 43 1 9.0606 -1.6358 4.0205 44 1 7.0358 -3.0662 5.6151 45 1 8.4243 -3.8423 4.8163 46 1 8.5641 -4.2834 7.4713 47 1 9.3802 -5.7776 10.3422 48 1 9.0962 -1.6533 0.2109 49 1 9.7138 -2.2713 1.7616 50 1 8.4363 -3.1579 0.8956 51 1 6.4559 -2.0198 0.2751 52 1 6.4558 -0.2556 0.5430 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673893566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:37 Heat of formation + Delta-G solvation = -90.391334 kcal Electronic energy + Delta-G solvation = -29150.264774 eV Core-core repulsion = 25148.412993 eV Total energy + Delta-G solvation = -4001.851780 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.34198 -40.21126 -39.31566 -37.83810 -36.22811 -35.57663 -33.51806 -33.21739 -32.15931 -30.82131 -29.82399 -28.14630 -27.40084 -27.05847 -25.86742 -24.67032 -22.95664 -21.54347 -20.99853 -20.45808 -19.89357 -18.25065 -17.94454 -17.79044 -17.29709 -16.79098 -16.64514 -16.31337 -16.11953 -15.84534 -15.37972 -15.28075 -15.11668 -14.88099 -14.81567 -14.53268 -14.11544 -14.00320 -13.82460 -13.59182 -13.49841 -13.44114 -13.24397 -13.14966 -13.01564 -12.98528 -12.90041 -12.75086 -12.61402 -12.43077 -12.16466 -12.13208 -12.10769 -11.96339 -11.61464 -11.52105 -11.50617 -10.97349 -10.37062 -10.03427 -9.71461 -9.43442 -9.34632 -8.47926 -5.96885 1.11685 1.37300 1.41118 1.53971 1.62106 2.01561 2.02838 2.28568 2.89701 3.19247 3.30283 3.51463 3.55956 3.74188 3.92553 3.97571 4.06569 4.18052 4.21111 4.28274 4.30943 4.40078 4.44686 4.49442 4.52734 4.54749 4.61273 4.66267 4.71304 4.75645 4.80619 4.85780 4.89175 4.91933 4.98216 5.01534 5.04497 5.08550 5.14262 5.17729 5.20320 5.26328 5.38951 5.40171 5.75969 5.86657 6.06509 6.09251 6.34614 6.52932 6.57862 7.10769 7.15121 7.54069 8.08762 8.69450 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018704 B = 0.001927 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.623549 B =14523.807934 C =15251.794992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.136 4.136 3 C -0.117 4.117 4 C -0.138 4.138 5 C -0.112 4.112 6 C -0.091 4.091 7 C 0.524 3.476 8 O -0.584 6.584 9 N -0.620 5.620 10 C 0.116 3.884 11 C 0.082 3.918 12 H 0.072 0.928 13 N -0.668 5.668 14 C 0.065 3.935 15 C 0.439 3.561 16 O -0.621 6.621 17 N -0.573 5.573 18 C -0.334 4.334 19 H 0.080 0.920 20 C -0.015 4.015 21 N -0.921 5.921 22 Si 0.994 3.006 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.271 1.271 26 C -0.100 4.100 27 H 0.092 0.908 28 C -0.140 4.140 29 C 0.106 3.894 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.045 0.955 38 H 0.062 0.938 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.354 0.646 44 H 0.094 0.906 45 H 0.071 0.929 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.084 0.916 49 H 0.052 0.948 50 H 0.064 0.936 51 H 0.097 0.903 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.199 5.247 -27.681 30.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.136 4.136 3 C -0.173 4.173 4 C -0.138 4.138 5 C -0.168 4.168 6 C -0.130 4.130 7 C 0.315 3.685 8 O -0.464 6.464 9 N -0.354 5.354 10 C -0.008 4.008 11 C -0.029 4.029 12 H 0.090 0.910 13 N -0.302 5.302 14 C -0.067 4.067 15 C 0.226 3.774 16 O -0.507 6.507 17 N -0.210 5.210 18 C -0.463 4.463 19 H 0.098 0.902 20 C -0.214 4.214 21 N -0.561 5.561 22 Si 0.818 3.182 23 H -0.198 1.198 24 H -0.195 1.195 25 H -0.196 1.196 26 C -0.119 4.119 27 H 0.110 0.890 28 C -0.198 4.198 29 C -0.016 4.016 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.175 0.825 44 H 0.112 0.888 45 H 0.089 0.911 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.102 0.898 49 H 0.071 0.929 50 H 0.083 0.917 51 H 0.115 0.885 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.814 6.087 -26.802 29.916 hybrid contribution 0.697 -1.046 1.119 1.683 sum -11.117 5.040 -25.683 28.436 Atomic orbital electron populations 1.20843 0.91483 1.02624 1.02007 1.21697 0.96582 0.94906 1.00453 1.20880 1.00141 0.94600 1.01691 1.20985 0.93880 0.95542 1.03405 1.20783 0.99662 0.94293 1.02086 1.20669 0.94805 1.06403 0.91156 1.20965 0.80167 0.75381 0.92003 1.90703 1.49288 1.51732 1.54655 1.48564 1.05780 1.71816 1.09212 1.22123 0.94320 1.00400 0.83990 1.22780 0.91862 0.98577 0.89636 0.90993 1.59849 1.16588 1.41093 1.12647 1.21582 0.99827 0.93699 0.91611 1.20790 0.85896 0.84982 0.85708 1.90490 1.51703 1.26761 1.81772 1.41944 1.42834 1.19304 1.16959 1.19680 1.24612 1.04798 0.97240 0.90173 1.26075 0.99058 0.94917 1.01380 1.69678 1.42893 1.09536 1.34035 0.84906 0.78066 0.77913 0.77324 1.19827 1.19479 1.19575 1.22398 0.95566 1.00572 0.93356 0.88991 1.21777 0.97219 1.00007 1.00775 1.22357 0.82879 1.03939 0.92401 0.91443 0.92554 0.90423 0.91272 0.93502 0.89680 0.89750 0.93600 0.91902 0.86158 0.86319 0.92268 0.92839 0.82470 0.88751 0.91071 0.77038 0.91298 0.89758 0.92872 0.91656 0.88512 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 8.67 71.23 0.62 -1.02 16 2 C -0.14 -2.31 6.04 -16.49 -0.10 -2.41 16 3 C -0.12 -1.65 8.61 71.24 0.61 -1.03 16 4 C -0.14 -2.43 4.54 -16.48 -0.07 -2.50 16 5 C -0.11 -1.82 9.70 71.24 0.69 -1.13 16 6 C -0.09 -1.37 4.66 29.10 0.14 -1.24 16 7 C 0.52 12.59 7.84 87.66 0.69 13.27 16 8 O -0.58 -19.93 16.29 -3.05 -0.05 -19.98 16 9 N -0.62 -13.19 3.32 -811.35 -2.70 -15.89 16 10 C 0.12 3.08 6.61 86.93 0.57 3.65 16 11 C 0.08 1.86 2.84 46.38 0.13 1.99 16 12 H 0.07 1.53 7.72 -2.39 -0.02 1.52 16 13 N -0.67 -20.28 6.03 -488.00 -2.94 -23.22 16 14 C 0.07 2.24 6.03 85.56 0.52 2.76 16 15 C 0.44 20.94 7.82 87.65 0.69 21.63 16 16 O -0.62 -34.26 15.78 -3.07 -0.05 -34.30 16 17 N -0.57 -29.74 5.29 -306.99 -1.62 -31.36 16 18 C -0.33 -19.12 9.68 84.04 0.81 -18.30 16 19 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 20 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 21 N -0.92 -50.23 13.05 21.66 0.28 -49.95 16 22 Si 0.99 43.29 29.55 68.60 2.03 45.32 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 24 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 C -0.10 -1.55 2.95 -9.60 -0.03 -1.57 16 27 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 28 C -0.14 -1.63 9.13 71.98 0.66 -0.98 16 29 C 0.11 1.34 6.08 86.73 0.53 1.87 16 30 H 0.07 0.84 7.71 -2.39 -0.02 0.82 16 31 H 0.06 0.94 7.38 -2.39 -0.02 0.93 16 32 H 0.08 0.88 8.11 -2.38 -0.02 0.87 16 33 H 0.07 0.85 7.70 -2.39 -0.02 0.83 16 34 H 0.05 0.82 7.94 -2.39 -0.02 0.81 16 35 H 0.08 0.84 7.62 -2.39 -0.02 0.82 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.06 1.04 6.21 -2.39 -0.01 1.03 16 39 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.12 1.28 6.26 -2.39 -0.01 1.27 16 41 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.05 1.64 8.03 -2.39 -0.02 1.62 16 43 H 0.35 10.81 8.14 -89.69 -0.73 10.08 16 44 H 0.09 3.13 8.14 -2.38 -0.02 3.11 16 45 H 0.07 2.10 8.09 -2.38 -0.02 2.08 16 46 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16 47 H 0.28 14.17 8.31 -92.70 -0.77 13.40 16 48 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 50 H 0.06 0.69 8.13 -2.39 -0.02 0.67 16 51 H 0.10 0.78 7.82 -2.39 -0.02 0.76 16 52 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -75.56 420.84 1.32 -74.24 By element: Atomic # 1 Polarization: 41.02 SS G_CDS: -0.54 Total: 40.48 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 6.92 Total: 14.66 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -6.98 Total: -120.42 kcal Atomic # 8 Polarization: -54.19 SS G_CDS: -0.10 Total: -54.29 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -75.56 1.32 -74.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673893566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.152 kcal (2) G-P(sol) polarization free energy of solvation -75.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds