Wall clock time and date at job start Tue Mar 31 2020 21:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46912 * 2 1 4 4 N 1.46496 * 109.47035 * 120.00093 * 2 1 3 5 5 C 1.34781 * 119.99635 * 274.99541 * 4 2 1 6 6 O 1.21270 * 120.00431 * 0.02562 * 5 4 2 7 7 C 1.50708 * 119.99587 * 180.02562 * 5 4 2 8 8 N 1.46501 * 109.46934 * 180.02562 * 7 5 4 9 9 C 1.34773 * 119.99805 * 180.02562 * 8 7 5 10 10 O 1.21282 * 119.99873 * 0.02562 * 9 8 7 11 11 C 1.50702 * 119.99746 * 179.97438 * 9 8 7 12 12 C 1.52995 * 109.47291 * 300.00277 * 11 9 8 13 13 C 1.52997 * 109.47089 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47218 * 59.99896 * 13 12 11 15 15 C 1.53003 * 109.47070 * 299.99854 * 14 13 12 16 16 C 1.52997 * 109.46655 * 60.00196 * 15 14 13 17 17 C 1.52996 * 109.47030 * 240.00205 * 2 1 3 18 18 C 1.53943 * 113.74487 * 156.67215 * 17 2 1 19 19 N 1.47571 * 86.12020 * 222.04722 * 18 17 2 20 20 C 1.36940 * 134.49250 * 204.63864 * 19 18 17 21 21 H 1.08009 * 119.99936 * 173.47852 * 20 19 18 22 22 C 1.38807 * 120.00174 * 353.48292 * 20 19 18 23 23 N 1.31620 * 119.99955 * 5.06675 * 22 20 19 24 24 Si 1.86804 * 120.00177 * 185.06455 * 22 20 19 25 25 H 1.48493 * 109.47123 * 94.98676 * 24 22 20 26 26 H 1.48497 * 109.46702 * 214.98735 * 24 22 20 27 27 H 1.48497 * 109.47109 * 334.98703 * 24 22 20 28 28 C 1.47583 * 91.01538 * 24.63704 * 19 18 17 29 29 H 1.08998 * 109.46912 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46977 * 299.99720 * 1 2 3 31 31 H 1.08999 * 109.47594 * 60.00124 * 1 2 3 32 32 H 0.96996 * 120.00052 * 94.72662 * 4 2 1 33 33 H 1.09001 * 109.47247 * 300.00495 * 7 5 4 34 34 H 1.08999 * 109.47006 * 60.00035 * 7 5 4 35 35 H 0.97001 * 119.99633 * 0.02562 * 8 7 5 36 36 H 1.09002 * 109.46821 * 60.00585 * 11 9 8 37 37 H 1.09002 * 109.47440 * 299.99929 * 12 11 9 38 38 H 1.08999 * 109.47362 * 59.99808 * 12 11 9 39 39 H 1.08999 * 109.47435 * 299.99748 * 13 12 11 40 40 H 1.09001 * 109.47258 * 179.97438 * 13 12 11 41 41 H 1.09001 * 109.47242 * 180.02562 * 14 13 12 42 42 H 1.08997 * 109.47610 * 60.00107 * 14 13 12 43 43 H 1.08994 * 109.47345 * 300.00094 * 15 14 13 44 44 H 1.08999 * 109.46800 * 179.97438 * 15 14 13 45 45 H 1.09001 * 109.46932 * 179.97438 * 16 15 14 46 46 H 1.09002 * 109.47495 * 60.00508 * 16 15 14 47 47 H 1.09004 * 112.94409 * 288.40716 * 17 2 1 48 48 H 1.09002 * 113.76371 * 336.34778 * 18 17 2 49 49 H 1.09004 * 113.76936 * 107.73878 * 18 17 2 50 50 H 0.96996 * 120.00469 * 180.02562 * 23 22 20 51 51 H 1.09000 * 113.77239 * 221.05472 * 28 19 18 52 52 H 1.08999 * 113.76578 * 89.66465 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0182 2.3571 6 8 1.8583 1.1584 2.4117 7 6 2.6500 -0.7285 3.5875 8 7 2.6987 0.2127 4.7091 9 6 3.1209 -0.2029 5.9196 10 8 3.4611 -1.3559 6.0803 11 6 3.1715 0.7655 7.0732 12 6 4.1146 1.9200 6.7290 13 6 4.1665 2.9027 7.9005 14 6 4.6779 2.1814 9.1491 15 6 3.7347 1.0269 9.4933 16 6 3.6829 0.0442 8.3218 17 6 2.0400 -0.7212 -1.2492 18 6 3.4666 -0.3145 -1.6608 19 7 2.9583 -0.3119 -3.0463 20 6 3.5328 -0.4676 -4.2795 21 1 2.9115 -0.5277 -5.1610 22 6 4.9135 -0.5484 -4.3969 23 7 5.6653 -0.5757 -3.3168 24 14 5.7048 -0.6184 -6.0876 25 1 6.1042 0.7498 -6.5042 26 1 6.9056 -1.4906 -6.0363 27 1 4.7336 -1.1701 -7.0662 28 6 1.5822 -0.0740 -2.5689 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.2453 -1.6327 1.1536 33 1 1.9778 -1.5508 3.8325 34 1 3.6493 -1.1203 3.3978 35 1 2.4270 1.1350 4.5804 36 1 2.1721 1.1569 7.2631 37 1 5.1141 1.5286 6.5392 38 1 3.7506 2.4336 5.8392 39 1 3.1672 3.2943 8.0908 40 1 4.8387 3.7250 7.6555 41 1 4.7144 2.8814 9.9838 42 1 5.6771 1.7898 8.9589 43 1 2.7354 1.4184 9.6836 44 1 4.0993 0.5127 10.3826 45 1 3.0114 -0.7786 8.5672 46 1 4.6822 -0.3475 8.1316 47 1 1.8828 -1.7992 -1.2115 48 1 3.7639 0.6702 -1.3001 49 1 4.2152 -1.0832 -1.4689 50 1 6.6302 -0.6317 -3.3987 51 1 0.8263 -0.6506 -3.1021 52 1 1.3261 0.9813 -2.4750 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675360363.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:41 Heat of formation + Delta-G solvation = -49.379011 kcal Electronic energy + Delta-G solvation = -29118.064454 eV Core-core repulsion = 25117.991101 eV Total energy + Delta-G solvation = -4000.073353 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.61354 -39.76703 -38.24421 -37.74867 -35.09457 -34.49598 -32.30524 -31.68673 -31.06479 -30.66090 -27.75764 -27.53816 -24.88067 -24.10027 -23.63808 -22.87221 -21.51853 -20.71324 -20.48236 -20.01061 -19.16378 -17.84918 -16.87279 -16.62571 -16.23347 -16.10856 -15.69642 -15.38636 -14.91565 -14.80587 -14.48080 -14.44427 -14.12921 -13.86780 -13.71185 -13.30421 -13.29405 -12.95743 -12.76453 -12.54196 -12.50489 -12.47147 -12.12277 -11.71526 -11.62808 -11.48058 -11.38865 -11.33536 -10.99812 -10.93073 -10.78693 -10.76528 -10.46398 -10.40057 -10.08921 -9.93967 -9.82344 -9.79348 -9.43690 -9.35498 -8.92205 -8.81179 -6.88806 -5.80390 -3.11794 2.41175 2.55268 2.70026 3.37266 3.38202 3.42936 3.44941 4.26742 4.32098 4.37303 4.43319 4.58473 4.81493 4.82859 4.88930 5.03479 5.05856 5.09555 5.13300 5.16310 5.20921 5.22982 5.25178 5.27068 5.48130 5.49484 5.60323 5.67956 5.71089 5.73867 5.74950 5.82398 5.87805 5.88837 5.95432 5.97432 6.06024 6.12288 6.19257 6.30509 6.35559 6.51897 6.61150 6.73174 7.20277 7.28860 7.31494 7.49158 7.54221 7.95791 8.00649 8.14708 9.02467 9.68561 10.58279 11.37270 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017267 B = 0.001922 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.212724 B =14564.113550 C =15376.903708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.151 3.849 3 H 0.089 0.911 4 N -0.711 5.711 5 C 0.509 3.491 6 O -0.544 6.544 7 C 0.097 3.903 8 N -0.717 5.717 9 C 0.518 3.482 10 O -0.542 6.542 11 C -0.103 4.103 12 C -0.113 4.113 13 C -0.118 4.118 14 C -0.123 4.123 15 C -0.120 4.120 16 C -0.099 4.099 17 C -0.148 4.148 18 C 0.173 3.827 19 N -0.612 5.612 20 C -0.225 4.225 21 H 0.080 0.920 22 C -0.007 4.007 23 N -0.919 5.919 24 Si 0.910 3.090 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.280 1.280 28 C 0.129 3.871 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.403 0.597 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.412 0.588 36 H 0.098 0.902 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.089 0.911 48 H 0.027 0.973 49 H 0.067 0.933 50 H 0.254 0.746 51 H 0.044 0.956 52 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.665 2.925 24.346 25.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.107 0.893 4 N -0.361 5.361 5 C 0.294 3.706 6 O -0.422 6.422 7 C -0.030 4.030 8 N -0.372 5.372 9 C 0.305 3.695 10 O -0.418 6.418 11 C -0.125 4.125 12 C -0.151 4.151 13 C -0.155 4.155 14 C -0.160 4.160 15 C -0.157 4.157 16 C -0.137 4.137 17 C -0.168 4.168 18 C 0.048 3.952 19 N -0.338 5.338 20 C -0.352 4.352 21 H 0.098 0.902 22 C -0.204 4.204 23 N -0.566 5.566 24 Si 0.740 3.260 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.205 1.205 28 C 0.003 3.997 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.237 0.763 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.250 0.750 36 H 0.116 0.884 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.107 0.893 48 H 0.045 0.955 49 H 0.086 0.914 50 H 0.064 0.936 51 H 0.062 0.938 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.357 2.889 24.218 25.475 hybrid contribution 0.499 0.030 -1.174 1.276 sum -6.859 2.919 23.044 24.219 Atomic orbital electron populations 1.22135 0.95547 1.01835 1.02155 1.21143 0.93532 0.97617 0.83115 0.89328 1.46019 1.66354 1.14228 1.09478 1.20426 0.77859 0.87432 0.84852 1.90678 1.50806 1.15852 1.84837 1.21095 1.03762 0.92902 0.85275 1.45758 1.67723 1.14910 1.08832 1.20718 0.76275 0.89005 0.83507 1.90706 1.47983 1.19335 1.83824 1.21340 1.01855 0.95595 0.93676 1.21561 0.99705 0.95114 0.98740 1.21524 1.01710 0.97700 0.94592 1.21577 0.99399 0.97432 0.97617 1.21561 0.99921 0.96398 0.97840 1.21351 1.02475 0.97421 0.92466 1.23857 1.01028 0.99729 0.92182 1.22201 0.91482 0.98213 0.83305 1.45926 1.02639 1.83150 1.02114 1.19028 0.89822 1.42999 0.83382 0.90203 1.24829 0.95900 1.02356 0.97322 1.69828 1.04195 1.56134 1.26450 0.86132 0.78982 0.77477 0.83402 1.21618 1.21695 1.20529 1.22505 0.89825 0.96735 0.90642 0.92659 0.92814 0.91296 0.76260 0.88484 0.88172 0.75013 0.88439 0.91188 0.91124 0.91699 0.91509 0.91972 0.91827 0.91929 0.91672 0.91237 0.91093 0.89311 0.95515 0.91432 0.93619 0.93754 0.94763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.29 37.16 0.35 -1.62 16 2 C 0.15 2.16 2.42 -67.93 -0.16 2.00 16 3 H 0.09 1.49 7.37 -51.93 -0.38 1.11 16 4 N -0.71 -8.65 5.08 -53.81 -0.27 -8.92 16 5 C 0.51 6.40 7.86 -10.98 -0.09 6.31 16 6 O -0.54 -8.41 15.33 5.57 0.09 -8.33 16 7 C 0.10 1.02 6.15 -5.19 -0.03 0.98 16 8 N -0.72 -7.45 5.42 -61.47 -0.33 -7.78 16 9 C 0.52 5.67 7.15 -10.99 -0.08 5.59 16 10 O -0.54 -7.71 15.98 5.56 0.09 -7.62 16 11 C -0.10 -0.83 2.53 -91.77 -0.23 -1.06 16 12 C -0.11 -0.82 5.10 -26.74 -0.14 -0.96 16 13 C -0.12 -0.71 5.92 -26.73 -0.16 -0.87 16 14 C -0.12 -0.72 5.92 -26.73 -0.16 -0.88 16 15 C -0.12 -0.73 5.92 -26.73 -0.16 -0.89 16 16 C -0.10 -0.79 4.49 -26.73 -0.12 -0.91 16 17 C -0.15 -2.52 3.50 -89.70 -0.31 -2.84 16 18 C 0.17 3.95 6.98 -2.98 -0.02 3.93 16 19 N -0.61 -15.48 3.70 -177.92 -0.66 -16.14 16 20 C -0.22 -6.29 10.70 -15.06 -0.16 -6.45 16 21 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 23 N -0.92 -27.25 11.51 55.49 0.64 -26.61 16 24 Si 0.91 22.11 29.56 -169.99 -5.02 17.09 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 C 0.13 2.53 7.56 -2.98 -0.02 2.51 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.84 7.43 -51.93 -0.39 0.45 16 32 H 0.40 4.03 8.61 -40.82 -0.35 3.68 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.41 4.09 6.86 -40.82 -0.28 3.81 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.50 7.56 -51.93 -0.39 0.11 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 46 H 0.07 0.66 8.10 -51.93 -0.42 0.23 16 47 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 48 H 0.03 0.65 7.96 -51.93 -0.41 0.24 16 49 H 0.07 1.70 7.35 -51.93 -0.38 1.31 16 50 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 51 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 52 H 0.03 0.66 8.06 -51.93 -0.42 0.24 16 LS Contribution 412.41 15.07 6.21 6.21 Total: -1.00 -33.90 412.41 -10.17 -44.06 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -9.31 Total: 3.51 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -1.59 Total: 4.53 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: -0.63 Total: -59.45 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.17 Total: -15.95 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.90 -10.17 -44.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675360363.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.316 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds