Wall clock time and date at job start Tue Mar 31 2020 21:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46912 * 2 1 4 4 N 1.46496 * 109.47035 * 120.00093 * 2 1 3 5 5 C 1.34781 * 119.99635 * 274.99541 * 4 2 1 6 6 O 1.21270 * 120.00431 * 0.02562 * 5 4 2 7 7 C 1.50708 * 119.99587 * 180.02562 * 5 4 2 8 8 N 1.46501 * 109.46934 * 180.02562 * 7 5 4 9 9 C 1.34773 * 119.99805 * 180.02562 * 8 7 5 10 10 O 1.21282 * 119.99873 * 0.02562 * 9 8 7 11 11 C 1.50702 * 119.99746 * 179.97438 * 9 8 7 12 12 C 1.52995 * 109.47291 * 300.00277 * 11 9 8 13 13 C 1.52997 * 109.47089 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47218 * 59.99896 * 13 12 11 15 15 C 1.53003 * 109.47070 * 299.99854 * 14 13 12 16 16 C 1.52997 * 109.46655 * 60.00196 * 15 14 13 17 17 C 1.52996 * 109.47030 * 240.00205 * 2 1 3 18 18 C 1.53943 * 113.74487 * 156.67215 * 17 2 1 19 19 N 1.47571 * 86.12020 * 222.04722 * 18 17 2 20 20 C 1.36940 * 134.49250 * 204.63864 * 19 18 17 21 21 H 1.08009 * 119.99936 * 173.47852 * 20 19 18 22 22 C 1.38807 * 120.00174 * 353.48292 * 20 19 18 23 23 N 1.31620 * 119.99955 * 5.06675 * 22 20 19 24 24 Si 1.86804 * 120.00177 * 185.06455 * 22 20 19 25 25 H 1.48493 * 109.47123 * 94.98676 * 24 22 20 26 26 H 1.48497 * 109.46702 * 214.98735 * 24 22 20 27 27 H 1.48497 * 109.47109 * 334.98703 * 24 22 20 28 28 C 1.47583 * 91.01538 * 24.63704 * 19 18 17 29 29 H 1.08998 * 109.46912 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46977 * 299.99720 * 1 2 3 31 31 H 1.08999 * 109.47594 * 60.00124 * 1 2 3 32 32 H 0.96996 * 120.00052 * 94.72662 * 4 2 1 33 33 H 1.09001 * 109.47247 * 300.00495 * 7 5 4 34 34 H 1.08999 * 109.47006 * 60.00035 * 7 5 4 35 35 H 0.97001 * 119.99633 * 0.02562 * 8 7 5 36 36 H 1.09002 * 109.46821 * 60.00585 * 11 9 8 37 37 H 1.09002 * 109.47440 * 299.99929 * 12 11 9 38 38 H 1.08999 * 109.47362 * 59.99808 * 12 11 9 39 39 H 1.08999 * 109.47435 * 299.99748 * 13 12 11 40 40 H 1.09001 * 109.47258 * 179.97438 * 13 12 11 41 41 H 1.09001 * 109.47242 * 180.02562 * 14 13 12 42 42 H 1.08997 * 109.47610 * 60.00107 * 14 13 12 43 43 H 1.08994 * 109.47345 * 300.00094 * 15 14 13 44 44 H 1.08999 * 109.46800 * 179.97438 * 15 14 13 45 45 H 1.09001 * 109.46932 * 179.97438 * 16 15 14 46 46 H 1.09002 * 109.47495 * 60.00508 * 16 15 14 47 47 H 1.09004 * 112.94409 * 288.40716 * 17 2 1 48 48 H 1.09002 * 113.76371 * 336.34778 * 18 17 2 49 49 H 1.09004 * 113.76936 * 107.73878 * 18 17 2 50 50 H 0.96996 * 120.00469 * 180.02562 * 23 22 20 51 51 H 1.09000 * 113.77239 * 221.05472 * 28 19 18 52 52 H 1.08999 * 113.76578 * 89.66465 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0182 2.3571 6 8 1.8583 1.1584 2.4117 7 6 2.6500 -0.7285 3.5875 8 7 2.6987 0.2127 4.7091 9 6 3.1209 -0.2029 5.9196 10 8 3.4611 -1.3559 6.0803 11 6 3.1715 0.7655 7.0732 12 6 4.1146 1.9200 6.7290 13 6 4.1665 2.9027 7.9005 14 6 4.6779 2.1814 9.1491 15 6 3.7347 1.0269 9.4933 16 6 3.6829 0.0442 8.3218 17 6 2.0400 -0.7212 -1.2492 18 6 3.4666 -0.3145 -1.6608 19 7 2.9583 -0.3119 -3.0463 20 6 3.5328 -0.4676 -4.2795 21 1 2.9115 -0.5277 -5.1610 22 6 4.9135 -0.5484 -4.3969 23 7 5.6653 -0.5757 -3.3168 24 14 5.7048 -0.6184 -6.0876 25 1 6.1042 0.7498 -6.5042 26 1 6.9056 -1.4906 -6.0363 27 1 4.7336 -1.1701 -7.0662 28 6 1.5822 -0.0740 -2.5689 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.2453 -1.6327 1.1536 33 1 1.9778 -1.5508 3.8325 34 1 3.6493 -1.1203 3.3978 35 1 2.4270 1.1350 4.5804 36 1 2.1721 1.1569 7.2631 37 1 5.1141 1.5286 6.5392 38 1 3.7506 2.4336 5.8392 39 1 3.1672 3.2943 8.0908 40 1 4.8387 3.7250 7.6555 41 1 4.7144 2.8814 9.9838 42 1 5.6771 1.7898 8.9589 43 1 2.7354 1.4184 9.6836 44 1 4.0993 0.5127 10.3826 45 1 3.0114 -0.7786 8.5672 46 1 4.6822 -0.3475 8.1316 47 1 1.8828 -1.7992 -1.2115 48 1 3.7639 0.6702 -1.3001 49 1 4.2152 -1.0832 -1.4689 50 1 6.6302 -0.6317 -3.3987 51 1 0.8263 -0.6506 -3.1021 52 1 1.3261 0.9813 -2.4750 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675360363.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:40 Heat of formation + Delta-G solvation = -72.186210 kcal Electronic energy + Delta-G solvation = -29119.053448 eV Core-core repulsion = 25117.991101 eV Total energy + Delta-G solvation = -4001.062347 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.53083 -40.82700 -39.70309 -38.48864 -36.34259 -35.49249 -34.21151 -32.47505 -31.82394 -31.60303 -29.39853 -28.62166 -26.54847 -25.63509 -24.47879 -23.45518 -22.94226 -21.58054 -21.46613 -20.79743 -20.51158 -18.84488 -18.69833 -17.74849 -17.27445 -17.01395 -16.88197 -16.68736 -16.19225 -15.76847 -15.62781 -15.30179 -15.01153 -14.97510 -14.87822 -14.67532 -14.28072 -14.10385 -13.80706 -13.55226 -13.37437 -13.26280 -13.18897 -13.08174 -13.07214 -12.89495 -12.70697 -12.54993 -12.23178 -12.03282 -11.99860 -11.73778 -11.57314 -11.51781 -11.34887 -11.26791 -11.02643 -10.96994 -10.87972 -10.72721 -10.26811 -10.04694 -8.91715 -7.93668 -5.25872 1.43935 1.45909 1.48699 1.54768 1.58673 1.78063 2.43716 2.46566 3.27313 3.37934 3.54673 3.63618 3.74454 3.79391 3.80497 3.96066 4.22506 4.27160 4.29104 4.30863 4.34216 4.40608 4.46906 4.50234 4.56662 4.60181 4.60647 4.71510 4.74879 4.83733 4.87440 4.97909 5.01801 5.08869 5.12718 5.17328 5.23983 5.25238 5.25729 5.27454 5.35403 5.37379 5.41319 5.45529 5.55221 5.56929 5.66373 5.92899 6.43969 6.48973 6.90750 7.13221 7.15768 7.59669 8.56046 9.23940 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017267 B = 0.001922 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.212724 B =14564.113550 C =15376.903708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.161 3.839 3 H 0.063 0.937 4 N -0.705 5.705 5 C 0.513 3.487 6 O -0.573 6.573 7 C 0.102 3.898 8 N -0.714 5.714 9 C 0.517 3.483 10 O -0.578 6.578 11 C -0.098 4.098 12 C -0.111 4.111 13 C -0.115 4.115 14 C -0.123 4.123 15 C -0.115 4.115 16 C -0.098 4.098 17 C -0.110 4.110 18 C 0.170 3.830 19 N -0.645 5.645 20 C -0.234 4.234 21 H 0.086 0.914 22 C -0.070 4.070 23 N -0.954 5.954 24 Si 0.977 3.023 25 H -0.290 1.290 26 H -0.295 1.295 27 H -0.264 1.264 28 C 0.129 3.871 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.416 0.584 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.415 0.585 36 H 0.118 0.882 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.052 0.948 47 H 0.106 0.894 48 H 0.004 0.996 49 H 0.037 0.963 50 H 0.248 0.752 51 H 0.065 0.935 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.548 3.040 24.921 26.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.055 3.945 3 H 0.081 0.919 4 N -0.356 5.356 5 C 0.299 3.701 6 O -0.453 6.453 7 C -0.026 4.026 8 N -0.369 5.369 9 C 0.305 3.695 10 O -0.458 6.458 11 C -0.119 4.119 12 C -0.149 4.149 13 C -0.153 4.153 14 C -0.160 4.160 15 C -0.152 4.152 16 C -0.136 4.136 17 C -0.129 4.129 18 C 0.044 3.956 19 N -0.372 5.372 20 C -0.363 4.363 21 H 0.103 0.897 22 C -0.263 4.263 23 N -0.602 5.602 24 Si 0.805 3.195 25 H -0.218 1.218 26 H -0.221 1.221 27 H -0.188 1.188 28 C 0.004 3.996 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.252 0.748 33 H 0.133 0.867 34 H 0.120 0.880 35 H 0.254 0.746 36 H 0.136 0.864 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.073 0.927 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.125 0.875 48 H 0.022 0.978 49 H 0.055 0.945 50 H 0.057 0.943 51 H 0.083 0.917 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.286 3.003 24.789 26.641 hybrid contribution 1.055 0.010 -1.356 1.718 sum -8.231 3.012 23.433 25.019 Atomic orbital electron populations 1.22051 0.93157 1.03178 1.02382 1.20852 0.95130 0.95875 0.82628 0.91911 1.45902 1.66142 1.14810 1.08787 1.20691 0.77126 0.86998 0.85266 1.90668 1.52099 1.17164 1.85321 1.21094 1.04097 0.93043 0.84330 1.45792 1.67290 1.15059 1.08733 1.21242 0.75281 0.88935 0.84061 1.90688 1.49697 1.21003 1.84398 1.21378 1.03123 0.95046 0.92345 1.21548 0.98688 0.95092 0.99585 1.21524 1.02516 0.97328 0.93891 1.21586 0.98880 0.97542 0.98025 1.21539 1.00701 0.95979 0.97005 1.21324 1.01131 0.97762 0.93351 1.23468 0.96112 1.00684 0.92664 1.22094 0.94085 0.96221 0.83195 1.46366 1.05360 1.83388 1.02050 1.19456 0.90321 1.41622 0.84890 0.89656 1.25676 0.96638 1.03077 1.00866 1.70017 1.03859 1.57941 1.28429 0.85083 0.77904 0.77067 0.79472 1.21752 1.22132 1.18836 1.22704 0.87711 0.97722 0.91439 0.90720 0.92857 0.90852 0.74773 0.86737 0.88046 0.74606 0.86425 0.92596 0.90953 0.90552 0.91115 0.90701 0.92652 0.90756 0.91165 0.92089 0.92951 0.87547 0.97806 0.94486 0.94337 0.91703 0.93850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.29 71.98 0.67 -2.62 16 2 C 0.16 4.38 2.42 44.99 0.11 4.49 16 3 H 0.06 2.09 7.37 -2.39 -0.02 2.08 16 4 N -0.71 -16.19 5.08 -442.54 -2.25 -18.44 16 5 C 0.51 12.39 7.86 87.66 0.69 13.08 16 6 O -0.57 -17.34 15.33 -3.00 -0.05 -17.39 16 7 C 0.10 2.03 6.15 85.64 0.53 2.55 16 8 N -0.71 -14.33 5.42 -466.77 -2.53 -16.86 16 9 C 0.52 11.10 7.15 87.66 0.63 11.73 16 10 O -0.58 -16.55 15.98 -3.03 -0.05 -16.60 16 11 C -0.10 -1.48 2.53 -11.54 -0.03 -1.51 16 12 C -0.11 -1.53 5.10 30.59 0.16 -1.38 16 13 C -0.12 -1.20 5.92 30.59 0.18 -1.02 16 14 C -0.12 -1.27 5.92 30.59 0.18 -1.09 16 15 C -0.11 -1.24 5.92 30.59 0.18 -1.05 16 16 C -0.10 -1.53 4.49 30.59 0.14 -1.39 16 17 C -0.11 -3.60 3.50 -10.14 -0.04 -3.63 16 18 C 0.17 7.89 6.98 86.48 0.60 8.49 16 19 N -0.65 -32.68 3.70 -716.82 -2.65 -35.33 16 20 C -0.23 -13.15 10.70 84.03 0.90 -12.25 16 21 H 0.09 4.55 7.83 -2.91 -0.02 4.52 16 22 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 23 N -0.95 -58.17 11.51 21.65 0.25 -57.92 16 24 Si 0.98 45.94 29.56 68.60 2.03 47.97 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 26 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 27 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 28 C 0.13 4.84 7.56 86.48 0.65 5.50 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 1.56 7.43 -2.39 -0.02 1.55 16 32 H 0.42 7.55 8.61 -92.71 -0.80 6.76 16 33 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.42 7.91 6.86 -92.71 -0.64 7.27 16 36 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 0.97 7.56 -2.39 -0.02 0.95 16 39 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.06 1.05 8.10 -2.39 -0.02 1.03 16 46 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 47 H 0.11 3.18 8.14 -2.38 -0.02 3.16 16 48 H 0.00 0.21 7.96 -2.39 -0.02 0.19 16 49 H 0.04 1.93 7.35 -2.39 -0.02 1.91 16 50 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 51 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 52 H 0.04 1.58 8.06 -2.39 -0.02 1.56 16 Total: -1.00 -74.80 412.41 0.25 -74.56 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: -0.53 Total: 23.64 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 6.02 Total: 16.36 kcal Atomic # 7 Polarization: -121.37 SS G_CDS: -7.18 Total: -128.54 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -0.09 Total: -33.99 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -74.80 0.25 -74.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675360363.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.370 kcal (2) G-P(sol) polarization free energy of solvation -74.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds