Wall clock time and date at job start Tue Mar 31 2020 20:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50698 * 120.00197 * 2 1 4 4 C 1.32997 * 120.00344 * 180.02562 * 2 1 3 5 5 C 1.47106 * 119.99520 * 5.63439 * 4 2 1 6 6 O 1.21614 * 120.00123 * 354.68845 * 5 4 2 7 7 N 1.34778 * 119.99548 * 174.41854 * 5 4 2 8 8 C 1.46503 * 119.99805 * 180.02562 * 7 5 4 9 9 H 1.09005 * 109.47245 * 325.00291 * 8 7 5 10 10 C 1.53001 * 109.47216 * 84.99447 * 8 7 5 11 11 C 1.52994 * 109.47379 * 204.99549 * 8 7 5 12 12 C 1.53116 * 109.52153 * 299.68602 * 11 8 7 13 13 C 1.53046 * 109.27769 * 182.44003 * 12 11 8 14 14 N 1.46848 * 109.52432 * 59.17326 * 13 12 11 15 15 C 1.46893 * 110.99797 * 174.16101 * 14 13 12 16 16 C 1.50698 * 109.47433 * 294.21454 * 15 14 13 17 17 O 1.21296 * 119.99915 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00413 * 180.02562 * 16 15 14 19 19 C 1.37095 * 120.00453 * 179.97438 * 18 16 15 20 20 H 1.08002 * 120.00010 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99961 * 179.97438 * 19 18 16 22 22 N 1.31410 * 119.99630 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00077 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47007 * 90.00260 * 23 21 19 25 25 H 1.48502 * 109.46733 * 209.99796 * 23 21 19 26 26 H 1.48502 * 109.46974 * 329.99658 * 23 21 19 27 27 C 1.46844 * 111.20052 * 298.25980 * 14 13 12 28 28 C 1.53046 * 109.52146 * 61.74120 * 27 14 13 29 29 H 1.09000 * 109.46976 * 238.11618 * 1 2 3 30 30 H 1.08996 * 109.47256 * 358.11585 * 1 2 3 31 31 H 1.08996 * 109.46890 * 118.11625 * 1 2 3 32 32 H 1.09004 * 109.46890 * 270.00148 * 3 2 1 33 33 H 1.08996 * 109.47048 * 29.99755 * 3 2 1 34 34 H 1.09003 * 109.47502 * 149.99970 * 3 2 1 35 35 H 1.07994 * 120.00634 * 185.63850 * 4 2 1 36 36 H 0.96998 * 120.00589 * 359.97438 * 7 5 4 37 37 H 1.09001 * 109.47370 * 300.00613 * 10 8 7 38 38 H 1.09002 * 109.46890 * 59.99794 * 10 8 7 39 39 H 1.09003 * 109.47220 * 180.02562 * 10 8 7 40 40 H 1.09008 * 109.52005 * 59.87088 * 11 8 7 41 41 H 1.08998 * 109.50359 * 302.37698 * 12 11 8 42 42 H 1.08998 * 109.50625 * 62.49683 * 12 11 8 43 43 H 1.09005 * 109.45633 * 299.16299 * 13 12 11 44 44 H 1.08997 * 109.46246 * 179.19309 * 13 12 11 45 45 H 1.09004 * 109.47213 * 54.21493 * 15 14 13 46 46 H 1.09000 * 109.47406 * 174.21076 * 15 14 13 47 47 H 0.97001 * 119.99739 * 359.97438 * 18 16 15 48 48 H 0.97001 * 119.99856 * 179.97438 * 22 21 19 49 49 H 1.08999 * 109.46329 * 301.72584 * 27 14 13 50 50 H 1.08994 * 109.45248 * 181.74865 * 27 14 13 51 51 H 1.09002 * 109.50366 * 180.87817 * 28 27 14 52 52 H 1.09004 * 109.53592 * 60.78089 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1518 -0.0005 5 6 1.4418 -2.4226 -0.1262 6 8 0.2257 -2.4271 -0.1323 7 7 2.1206 -3.5814 -0.2399 8 6 1.3934 -4.8469 -0.3656 9 1 0.4816 -4.8029 0.2301 10 6 1.0324 -5.0841 -1.8334 11 6 2.2746 -5.9933 0.1345 12 6 3.5521 -6.0612 -0.7068 13 6 4.4009 -7.2469 -0.2419 14 7 3.6308 -8.4887 -0.3874 15 6 4.4607 -9.6615 -0.0814 16 6 5.5525 -9.7873 -1.1125 17 8 5.6313 -8.9796 -2.0139 18 7 6.4408 -10.7978 -1.0336 19 6 7.4338 -10.9125 -1.9719 20 1 7.5039 -10.1933 -2.7746 21 6 8.3499 -11.9541 -1.8902 22 7 9.3019 -12.0637 -2.7893 23 14 8.2281 -13.1984 -0.5023 24 1 7.3588 -14.3263 -0.9236 25 1 9.5831 -13.7122 -0.1780 26 1 7.6457 -12.5459 0.6978 27 6 2.4234 -8.4659 0.4481 28 6 1.5156 -7.3167 0.0036 29 1 -0.3633 -0.5428 0.8726 30 1 -0.3633 1.0271 0.0338 31 1 -0.3633 -0.4843 -0.9064 32 1 2.4421 1.6197 -1.0277 33 1 1.6714 2.0647 0.5138 34 1 3.2129 1.1748 0.5138 35 1 3.2480 -1.1541 0.0914 36 1 3.0906 -3.5774 -0.2393 37 1 0.4047 -4.2674 -2.1898 38 1 1.9441 -5.1281 -2.4292 39 1 0.4910 -6.0256 -1.9269 40 1 2.5341 -5.8240 1.1796 41 1 3.2899 -6.1911 -1.7568 42 1 4.1183 -5.1380 -0.5840 43 1 4.6742 -7.1095 0.8044 44 1 5.3045 -7.3066 -0.8484 45 1 4.9058 -9.5439 0.9066 46 1 3.8416 -10.5586 -0.0964 47 1 6.3776 -11.4440 -0.3129 48 1 9.9417 -12.7906 -2.7321 49 1 2.7061 -8.3229 1.4910 50 1 1.8910 -9.4110 0.3424 51 1 0.6268 -7.2904 0.6340 52 1 1.2208 -7.4659 -1.0351 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677346213.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:41 Heat of formation + Delta-G solvation = -83.246084 kcal Electronic energy + Delta-G solvation = -29405.334503 eV Core-core repulsion = 25403.792564 eV Total energy + Delta-G solvation = -4001.541939 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.27382 -40.59188 -39.51606 -37.29130 -36.14513 -35.85771 -34.02687 -33.69772 -31.76349 -31.22391 -28.84205 -28.64147 -28.51454 -26.47578 -24.94832 -24.24083 -22.82791 -21.58877 -21.24114 -20.23060 -20.16656 -19.53269 -18.00570 -17.68632 -17.08261 -16.75870 -16.43231 -16.36729 -16.03223 -15.65069 -15.50888 -15.28822 -15.14528 -14.98742 -14.88809 -14.57983 -14.43080 -14.23778 -13.94635 -13.73011 -13.55265 -13.30731 -13.23899 -13.17688 -12.92148 -12.79406 -12.66529 -12.56415 -12.51637 -12.40562 -12.38781 -11.97650 -11.82269 -11.60236 -11.50900 -11.31710 -11.11480 -10.57234 -10.29126 -10.24622 -10.19913 -9.79907 -9.12105 -8.39772 -5.99957 0.43966 1.30502 1.36249 1.44717 1.98915 2.23881 2.28109 2.38694 2.67404 3.16161 3.26771 3.65333 3.80107 3.83019 3.92035 3.94492 4.14036 4.25253 4.31471 4.33231 4.36894 4.42579 4.46583 4.53005 4.58244 4.58934 4.65128 4.70179 4.78119 4.81342 4.83577 4.91125 4.91735 4.97786 5.04001 5.07412 5.10031 5.18504 5.23331 5.26747 5.31034 5.53680 5.54817 5.57007 5.60899 5.66492 5.94060 6.11328 6.32345 6.62356 6.65468 6.91066 7.33387 7.42719 8.00505 8.77922 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023146 B = 0.001927 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.421551 B =14528.955482 C =15202.060264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.031 4.031 3 C -0.125 4.125 4 C -0.252 4.252 5 C 0.537 3.463 6 O -0.579 6.579 7 N -0.716 5.716 8 C 0.157 3.843 9 H 0.078 0.922 10 C -0.161 4.161 11 C -0.082 4.082 12 C -0.103 4.103 13 C 0.055 3.945 14 N -0.537 5.537 15 C 0.054 3.946 16 C 0.451 3.549 17 O -0.603 6.603 18 N -0.594 5.594 19 C -0.325 4.325 20 H 0.055 0.945 21 C -0.017 4.017 22 N -0.936 5.936 23 Si 0.965 3.035 24 H -0.258 1.258 25 H -0.276 1.276 26 H -0.232 1.232 27 C 0.057 3.943 28 C -0.107 4.107 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.147 0.853 36 H 0.408 0.592 37 H 0.042 0.958 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.035 0.965 44 H 0.057 0.943 45 H 0.074 0.926 46 H 0.119 0.881 47 H 0.388 0.612 48 H 0.278 0.722 49 H 0.044 0.956 50 H 0.088 0.912 51 H 0.089 0.911 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.332 18.749 13.878 29.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.033 4.033 3 C -0.181 4.181 4 C -0.272 4.272 5 C 0.328 3.672 6 O -0.462 6.462 7 N -0.368 5.368 8 C 0.052 3.948 9 H 0.096 0.904 10 C -0.219 4.219 11 C -0.101 4.101 12 C -0.141 4.141 13 C -0.073 4.073 14 N -0.262 5.262 15 C -0.077 4.077 16 C 0.239 3.761 17 O -0.487 6.487 18 N -0.236 5.236 19 C -0.454 4.454 20 H 0.073 0.927 21 C -0.215 4.215 22 N -0.577 5.577 23 Si 0.785 3.215 24 H -0.182 1.182 25 H -0.201 1.201 26 H -0.155 1.155 27 C -0.070 4.070 28 C -0.145 4.145 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.165 0.835 36 H 0.245 0.755 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.053 0.947 44 H 0.075 0.925 45 H 0.092 0.908 46 H 0.137 0.863 47 H 0.224 0.776 48 H 0.088 0.912 49 H 0.062 0.938 50 H 0.106 0.894 51 H 0.108 0.892 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.104 19.137 12.703 29.246 hybrid contribution 1.394 -1.010 0.737 1.873 sum -16.709 18.127 13.440 28.079 Atomic orbital electron populations 1.20972 0.91706 1.01762 1.02605 1.22878 0.96589 0.95709 0.88118 1.21085 1.00353 0.92832 1.03850 1.22526 1.01201 0.91142 1.12355 1.19023 0.87176 0.85281 0.75673 1.90749 1.15169 1.87812 1.52472 1.46044 1.10796 1.05883 1.74071 1.20805 0.95088 0.82358 0.96509 0.90381 1.22221 1.01581 1.01843 0.96245 1.21379 0.94702 0.94233 0.99817 1.21593 0.95579 0.96662 1.00223 1.22113 0.97035 0.89533 0.98603 1.61452 1.07211 1.01355 1.56229 1.21802 0.93979 0.96495 0.95401 1.20931 0.84428 0.82226 0.88501 1.90515 1.75662 1.44036 1.38476 1.42055 1.27612 1.27175 1.26758 1.18987 1.06931 1.12525 1.06967 0.92672 1.26102 0.94626 0.99842 1.00913 1.69807 1.17199 1.33574 1.37083 0.85369 0.79061 0.78499 0.78605 1.18236 1.20132 1.15502 1.22192 0.90242 1.00265 0.94327 1.21653 0.97789 0.92181 1.02902 0.91667 0.90909 0.91905 0.89263 0.89889 0.89995 0.83523 0.75477 0.93926 0.92465 0.90595 0.90020 0.92061 0.90760 0.94728 0.92474 0.90802 0.86294 0.77615 0.91238 0.93766 0.89383 0.89215 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.91 8.34 71.23 0.59 -1.32 16 2 C -0.03 -0.45 6.11 -17.62 -0.11 -0.55 16 3 C -0.12 -0.97 9.99 71.24 0.71 -0.26 16 4 C -0.25 -4.00 9.63 23.43 0.23 -3.77 16 5 C 0.54 11.48 7.69 86.57 0.67 12.14 16 6 O -0.58 -15.96 12.77 -4.07 -0.05 -16.01 16 7 N -0.72 -13.02 5.00 -446.12 -2.23 -15.25 16 8 C 0.16 3.00 2.41 44.99 0.11 3.11 16 9 H 0.08 1.66 7.58 -2.38 -0.02 1.64 16 10 C -0.16 -3.36 8.78 71.98 0.63 -2.73 16 11 C -0.08 -1.49 2.25 -10.72 -0.02 -1.51 16 12 C -0.10 -2.37 4.87 30.65 0.15 -2.22 16 13 C 0.05 1.60 5.11 86.33 0.44 2.05 16 14 N -0.54 -15.56 4.40 -900.92 -3.96 -19.52 16 15 C 0.05 1.65 5.45 85.56 0.47 2.12 16 16 C 0.45 20.18 7.46 87.66 0.65 20.84 16 17 O -0.60 -32.86 13.90 -3.08 -0.04 -32.90 16 18 N -0.59 -27.84 5.09 -306.98 -1.56 -29.41 16 19 C -0.32 -18.97 10.16 84.04 0.85 -18.12 16 20 H 0.06 3.84 7.39 -2.91 -0.02 3.82 16 21 C -0.02 -0.91 5.50 84.93 0.47 -0.45 16 22 N -0.94 -56.46 13.96 21.66 0.30 -56.16 16 23 Si 0.96 38.70 27.74 68.60 1.90 40.60 16 24 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 25 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 26 H -0.23 -7.79 6.52 99.48 0.65 -7.14 16 27 C 0.06 1.13 5.46 86.33 0.47 1.61 16 28 C -0.11 -1.91 5.09 30.65 0.16 -1.75 16 29 H 0.06 1.31 7.31 -2.39 -0.02 1.29 16 30 H 0.07 0.86 7.93 -2.39 -0.02 0.84 16 31 H 0.06 1.32 7.15 -2.39 -0.02 1.30 16 32 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.08 0.47 8.03 -2.39 -0.02 0.45 16 34 H 0.08 0.48 8.06 -2.39 -0.02 0.47 16 35 H 0.15 1.59 8.04 -2.91 -0.02 1.57 16 36 H 0.41 5.93 6.91 -92.71 -0.64 5.29 16 37 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.06 1.27 6.37 -2.39 -0.02 1.26 16 39 H 0.08 1.47 6.38 -2.39 -0.02 1.46 16 40 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 41 H 0.06 1.68 6.31 -2.39 -0.02 1.66 16 42 H 0.07 1.44 6.62 -2.39 -0.02 1.42 16 43 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 44 H 0.06 2.22 5.78 -2.39 -0.01 2.21 16 45 H 0.07 1.89 8.12 -2.39 -0.02 1.87 16 46 H 0.12 2.95 7.99 -2.39 -0.02 2.93 16 47 H 0.39 15.07 5.76 -92.71 -0.53 14.54 16 48 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 49 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.09 1.55 8.01 -2.39 -0.02 1.53 16 51 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 52 H 0.07 1.41 6.31 -2.38 -0.02 1.40 16 Total: -1.00 -79.33 401.08 0.52 -78.81 By element: Atomic # 1 Polarization: 40.94 SS G_CDS: -0.30 Total: 40.64 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 6.46 Total: 9.19 kcal Atomic # 7 Polarization: -112.88 SS G_CDS: -7.45 Total: -120.33 kcal Atomic # 8 Polarization: -48.82 SS G_CDS: -0.09 Total: -48.91 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 1.90 Total: 40.60 kcal Total: -79.33 0.52 -78.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677346213.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.432 kcal (2) G-P(sol) polarization free energy of solvation -79.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds