Wall clock time and date at job start Tue Mar 31 2020 20:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08992 * 109.47247 * 2 1 4 4 C 1.52998 * 109.46990 * 239.99786 * 2 1 3 5 5 C 1.50694 * 109.47236 * 65.00393 * 4 2 1 6 6 O 1.21279 * 119.99987 * 359.97438 * 5 4 2 7 7 N 1.34783 * 120.00272 * 179.97438 * 5 4 2 8 8 C 1.46499 * 119.99918 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.46882 * 180.02562 * 8 7 5 10 10 H 1.08997 * 112.85474 * 43.80022 * 9 8 7 11 11 C 1.53781 * 113.61406 * 174.99788 * 9 8 7 12 12 C 1.53786 * 87.17350 * 140.02181 * 11 9 8 13 13 H 1.09000 * 113.61138 * 220.06261 * 12 11 9 14 14 N 1.46888 * 113.61561 * 89.15683 * 12 11 9 15 15 C 1.46903 * 111.00154 * 154.99764 * 14 12 11 16 16 C 1.50699 * 109.47177 * 179.97438 * 15 14 12 17 17 O 1.21294 * 120.00282 * 0.02562 * 16 15 14 18 18 N 1.34785 * 119.99898 * 180.02562 * 16 15 14 19 19 C 1.37096 * 119.99948 * 180.02562 * 18 16 15 20 20 H 1.07995 * 119.99556 * 0.02562 * 19 18 16 21 21 C 1.38948 * 119.99609 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00050 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99753 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47271 * 89.99728 * 23 21 19 25 25 H 1.48496 * 109.47233 * 209.99915 * 23 21 19 26 26 H 1.48496 * 109.47070 * 329.99923 * 23 21 19 27 27 C 1.53782 * 113.68747 * 272.53320 * 9 8 7 28 28 C 1.53004 * 109.46561 * 120.00030 * 2 1 3 29 29 C 1.52995 * 117.49882 * 248.61965 * 28 2 1 30 30 C 1.53004 * 60.00336 * 252.51493 * 29 28 2 31 31 H 1.08992 * 109.46877 * 299.99991 * 1 2 3 32 32 H 1.09000 * 109.46768 * 60.00013 * 1 2 3 33 33 H 1.09005 * 109.47097 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47248 * 305.00087 * 4 2 1 35 35 H 1.09003 * 109.47049 * 185.00160 * 4 2 1 36 36 H 0.96999 * 119.99505 * 359.97438 * 7 5 4 37 37 H 1.08995 * 109.47324 * 59.99404 * 8 7 5 38 38 H 1.09003 * 109.46872 * 299.99751 * 8 7 5 39 39 H 1.09002 * 113.61445 * 254.61180 * 11 9 8 40 40 H 1.09002 * 113.61408 * 25.42911 * 11 9 8 41 41 H 1.00905 * 111.00357 * 31.04862 * 14 12 11 42 42 H 1.08993 * 109.47292 * 300.00635 * 15 14 12 43 43 H 1.09008 * 109.46761 * 60.00283 * 15 14 12 44 44 H 0.97005 * 119.99782 * 0.02562 * 18 16 15 45 45 H 0.97006 * 119.99507 * 179.97438 * 22 21 19 46 46 H 1.08997 * 113.61668 * 334.55355 * 27 9 8 47 47 H 1.08998 * 113.61674 * 105.37864 * 27 9 8 48 48 H 1.09004 * 115.55247 * 34.33539 * 28 2 1 49 49 H 1.09005 * 117.49928 * 0.02562 * 29 28 2 50 50 H 1.08997 * 117.50447 * 145.02366 * 29 28 2 51 51 H 1.09003 * 117.49617 * 252.51412 * 30 29 28 52 52 H 1.09003 * 117.49926 * 107.48365 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6415 0.0570 -2.4765 6 8 1.0111 1.0869 -2.3633 7 7 1.9855 -0.3915 -3.7001 8 6 1.5984 0.3655 -4.8932 9 6 2.1083 -0.3559 -6.1424 10 1 1.9437 -1.4328 -6.1063 11 6 1.6499 0.2934 -7.4589 12 6 3.0600 0.0079 -8.0022 13 1 3.4650 0.8159 -8.6113 14 7 3.1894 -1.3091 -8.6398 15 6 4.2824 -1.3137 -9.6213 16 6 4.3848 -2.6782 -10.2527 17 8 3.6221 -3.5600 -9.9183 18 7 5.3241 -2.9187 -11.1890 19 6 5.4170 -4.1599 -11.7637 20 1 4.7373 -4.9447 -11.4665 21 6 6.3856 -4.4079 -12.7286 22 7 7.2123 -3.4526 -13.0905 23 14 6.5117 -6.0989 -13.5123 24 1 5.6500 -6.1500 -14.7205 25 1 7.9214 -6.3617 -13.8981 26 1 6.0640 -7.1291 -12.5411 27 6 3.5414 0.0352 -6.5400 28 6 2.0400 -0.7213 1.2493 29 6 2.7418 0.1225 2.3152 30 6 3.5550 -0.8282 1.4344 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6054 -1.7198 -1.2951 35 1 3.1264 -0.7995 -1.2055 36 1 2.4899 -1.2150 -3.7906 37 1 2.0330 1.3639 -4.8469 38 1 0.5121 0.4437 -4.9372 39 1 0.8641 -0.2632 -7.9699 40 1 1.4244 1.3558 -7.3665 41 1 2.3195 -1.5916 -9.0660 42 1 4.0813 -0.5702 -10.3925 43 1 5.2208 -1.0737 -9.1212 44 1 5.9343 -2.2135 -11.4561 45 1 7.8887 -3.6260 -13.7638 46 1 3.8345 1.0273 -6.1967 47 1 4.2830 -0.7292 -6.3079 48 1 1.4310 -1.5586 1.5902 49 1 2.8400 1.1916 2.1266 50 1 2.5946 -0.1593 3.3578 51 1 3.9427 -1.7356 1.8975 52 1 4.1884 -0.3846 0.6661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691190025.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:06 Heat of formation + Delta-G solvation = -45.279296 kcal Electronic energy + Delta-G solvation = -27983.387950 eV Core-core repulsion = 23983.492374 eV Total energy + Delta-G solvation = -3999.895576 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.32012 -39.41194 -38.19185 -37.95306 -35.07545 -34.03769 -33.44820 -33.07673 -31.21911 -29.26073 -27.39903 -26.16932 -25.68478 -24.06609 -23.67606 -22.72539 -22.13301 -20.86818 -19.98339 -19.29023 -18.98732 -17.91259 -17.29883 -16.56532 -16.10586 -15.93492 -15.68520 -15.38109 -15.19388 -14.90859 -14.75133 -14.45474 -14.05677 -13.88326 -13.76767 -13.43502 -13.41795 -13.18864 -12.56278 -12.48004 -12.33563 -12.22639 -11.95567 -11.69670 -11.66129 -11.58824 -11.53389 -11.44629 -11.16154 -11.07494 -10.90439 -10.62498 -10.56287 -10.40957 -10.34765 -10.27515 -10.22651 -9.82724 -9.52811 -9.21990 -8.45962 -8.09116 -7.97767 -6.43498 -3.84413 2.45529 2.95675 3.16419 3.25251 3.31096 3.42613 3.88809 4.03462 4.21716 4.25794 4.42559 4.47243 4.50495 4.56508 4.65772 4.72177 4.76889 4.79742 4.89325 5.11072 5.16876 5.18212 5.21337 5.24454 5.28348 5.33088 5.45031 5.47272 5.51633 5.54583 5.59652 5.66099 5.71900 5.73358 5.74242 5.80242 5.83650 5.93098 6.03176 6.05945 6.09918 6.19030 6.20195 6.30508 6.38948 7.24627 7.30430 7.53425 7.63902 8.04068 8.04463 8.59309 9.16000 9.52430 10.03714 10.74173 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017883 B = 0.001529 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.397136 B =18306.356260 C =19216.808498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.043 4.043 3 H 0.077 0.923 4 C -0.137 4.137 5 C 0.511 3.489 6 O -0.542 6.542 7 N -0.728 5.728 8 C 0.129 3.871 9 C -0.115 4.115 10 H 0.103 0.897 11 C -0.135 4.135 12 C 0.061 3.939 13 H 0.058 0.942 14 N -0.650 5.650 15 C 0.052 3.948 16 C 0.440 3.560 17 O -0.584 6.584 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.901 5.901 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C -0.127 4.127 28 C -0.150 4.150 29 C -0.179 4.179 30 C -0.182 4.182 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.403 0.597 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.351 0.649 42 H 0.044 0.956 43 H 0.085 0.915 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.104 0.896 49 H 0.094 0.906 50 H 0.092 0.908 51 H 0.094 0.906 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.421 10.028 23.948 27.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.062 4.062 3 H 0.096 0.904 4 C -0.177 4.177 5 C 0.297 3.703 6 O -0.420 6.420 7 N -0.380 5.380 8 C 0.005 3.995 9 C -0.133 4.133 10 H 0.121 0.879 11 C -0.173 4.173 12 C -0.050 4.050 13 H 0.076 0.924 14 N -0.283 5.283 15 C -0.081 4.081 16 C 0.226 3.774 17 O -0.469 6.469 18 N -0.200 5.200 19 C -0.430 4.430 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.166 4.166 28 C -0.168 4.168 29 C -0.216 4.216 30 C -0.219 4.219 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.237 0.763 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.172 0.828 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.097 0.903 47 H 0.095 0.905 48 H 0.122 0.878 49 H 0.112 0.888 50 H 0.111 0.889 51 H 0.112 0.888 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.851 9.904 24.588 27.947 hybrid contribution 0.530 -0.319 -1.428 1.556 sum -8.322 9.586 23.161 26.411 Atomic orbital electron populations 1.21919 0.94279 1.01491 1.03043 1.20446 0.96530 0.98764 0.90475 0.90417 1.21751 1.03072 1.00385 0.92480 1.20738 0.79074 0.85717 0.84736 1.90664 1.39905 1.24735 1.86711 1.46097 1.57907 1.28069 1.05919 1.21424 0.99877 0.95041 0.83138 1.22708 0.97204 1.00871 0.92530 0.87872 1.23192 0.96941 1.01036 0.96176 1.22577 0.96215 0.90857 0.95318 0.92378 1.59945 1.09235 1.24489 1.34644 1.21720 0.96036 0.96481 0.93840 1.19817 0.84588 0.89464 0.83551 1.90520 1.44835 1.46631 1.64876 1.41868 1.29998 1.13319 1.34807 1.19706 1.15873 0.89380 1.18023 0.87919 1.25262 0.95813 0.99464 0.97371 1.69615 1.19583 1.32888 1.32184 0.85853 0.77327 0.81770 0.79314 1.20421 1.20915 1.19413 1.23136 0.96331 1.01322 0.95763 1.22414 0.94736 1.01961 0.97667 1.23004 1.04637 0.97698 0.96259 1.22972 0.93878 1.01820 1.03271 0.92854 0.90575 0.93277 0.88763 0.88828 0.76279 0.91595 0.91687 0.90845 0.89557 0.82795 0.93800 0.89634 0.77454 0.91866 0.90327 0.90538 0.87757 0.88787 0.88941 0.88796 0.88734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.92 37.16 0.33 -0.90 16 2 C -0.04 -0.33 2.19 -90.61 -0.20 -0.53 16 3 H 0.08 0.70 7.71 -51.93 -0.40 0.30 16 4 C -0.14 -0.94 5.09 -27.89 -0.14 -1.09 16 5 C 0.51 4.94 7.55 -10.99 -0.08 4.85 16 6 O -0.54 -7.13 13.96 5.56 0.08 -7.05 16 7 N -0.73 -6.16 5.56 -60.30 -0.33 -6.49 16 8 C 0.13 1.18 5.51 -4.04 -0.02 1.16 16 9 C -0.11 -1.07 3.67 -89.81 -0.33 -1.40 16 10 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 11 C -0.13 -1.28 7.31 -25.92 -0.19 -1.47 16 12 C 0.06 0.70 4.23 -66.81 -0.28 0.42 16 13 H 0.06 0.65 7.87 -51.93 -0.41 0.25 16 14 N -0.65 -9.92 6.08 -107.03 -0.65 -10.58 16 15 C 0.05 0.89 6.01 -4.97 -0.03 0.86 16 16 C 0.44 10.24 7.82 -10.98 -0.09 10.15 16 17 O -0.58 -15.63 15.78 5.55 0.09 -15.55 16 18 N -0.56 -14.15 5.29 -10.96 -0.06 -14.20 16 19 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 20 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.35 13.05 55.50 0.72 -23.63 16 23 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 C -0.13 -1.30 7.44 -25.82 -0.19 -1.49 16 28 C -0.15 -0.95 5.15 -90.62 -0.47 -1.41 16 29 C -0.18 -1.09 10.18 -26.73 -0.27 -1.36 16 30 C -0.18 -1.07 9.67 -26.73 -0.26 -1.32 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.79 5.95 -51.93 -0.31 0.48 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.53 7.12 -51.93 -0.37 0.16 16 36 H 0.40 2.70 8.47 -40.82 -0.35 2.35 16 37 H 0.07 0.65 7.85 -51.93 -0.41 0.24 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.72 7.91 -51.93 -0.41 0.30 16 40 H 0.09 0.71 8.10 -51.93 -0.42 0.29 16 41 H 0.35 5.58 8.09 -39.29 -0.32 5.26 16 42 H 0.04 0.69 8.13 -51.93 -0.42 0.26 16 43 H 0.09 1.38 8.14 -51.92 -0.42 0.95 16 44 H 0.39 9.42 7.90 -40.82 -0.32 9.09 16 45 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.08 0.72 7.90 -51.93 -0.41 0.31 16 47 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.10 0.62 8.11 -51.93 -0.42 0.20 16 49 H 0.09 0.58 8.05 -51.93 -0.42 0.16 16 50 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 52 H 0.09 0.55 7.58 -51.93 -0.39 0.15 16 LS Contribution 421.99 15.07 6.36 6.36 Total: -1.00 -32.15 421.99 -10.37 -42.52 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: -9.09 Total: 14.23 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -2.46 Total: -1.49 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.32 Total: -54.90 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: 0.17 Total: -22.60 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -32.15 -10.37 -42.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691190025.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.757 kcal (2) G-P(sol) polarization free energy of solvation -32.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds