Wall clock time and date at job start Tue Mar 31 2020 20:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46539 * 2 1 4 4 C 1.50704 * 109.47110 * 240.00529 * 2 1 3 5 5 O 1.21280 * 119.99784 * 239.99582 * 4 2 1 6 6 N 1.34782 * 119.99991 * 59.99310 * 4 2 1 7 7 C 1.46497 * 119.99718 * 0.02562 * 6 4 2 8 8 C 1.46493 * 119.99920 * 179.97438 * 6 4 2 9 9 C 1.53514 * 114.17020 * 120.00236 * 8 6 4 10 10 N 1.47482 * 87.93039 * 87.81444 * 9 8 6 11 11 C 1.46901 * 110.99764 * 138.70591 * 10 9 8 12 12 C 1.50701 * 109.46921 * 169.99672 * 11 10 9 13 13 O 1.21294 * 119.99849 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99795 * 179.97438 * 12 11 10 15 15 C 1.37101 * 119.99707 * 180.02562 * 14 12 11 16 16 H 1.08002 * 119.99704 * 359.97438 * 15 14 12 17 17 C 1.38941 * 119.99927 * 180.02562 * 15 14 12 18 18 N 1.31417 * 120.00180 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00273 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47117 * 59.99412 * 19 17 15 21 21 H 1.48498 * 109.47600 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46756 * 300.00019 * 19 17 15 23 23 C 1.47480 * 87.83699 * 27.01095 * 10 9 8 24 24 C 1.52995 * 109.47708 * 120.00301 * 2 1 3 25 25 C 1.54270 * 110.02998 * 297.17084 * 24 2 1 26 26 C 1.54886 * 104.19382 * 217.10302 * 25 24 2 27 27 C 1.54889 * 102.75119 * 37.93872 * 26 25 24 28 28 C 1.53870 * 110.03526 * 180.02562 * 24 2 1 29 29 H 1.08999 * 109.47190 * 299.98991 * 1 2 3 30 30 H 1.08994 * 109.47870 * 59.99813 * 1 2 3 31 31 H 1.09007 * 109.46817 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47272 * 269.99682 * 7 6 4 33 33 H 1.08997 * 109.47646 * 29.99997 * 7 6 4 34 34 H 1.09006 * 109.47149 * 150.00117 * 7 6 4 35 35 H 1.08998 * 113.25916 * 347.05254 * 8 6 4 36 36 H 1.08994 * 113.47382 * 333.04288 * 9 8 6 37 37 H 1.09003 * 113.47448 * 202.58196 * 9 8 6 38 38 H 1.09002 * 109.47401 * 49.99700 * 11 10 9 39 39 H 1.09001 * 109.46874 * 289.99713 * 11 10 9 40 40 H 0.96995 * 120.00011 * 0.02562 * 14 12 11 41 41 H 0.97000 * 119.99884 * 180.02562 * 18 17 15 42 42 H 1.08999 * 113.47664 * 87.75895 * 23 10 9 43 43 H 1.08994 * 113.47488 * 218.22090 * 23 10 9 44 44 H 1.09002 * 110.01391 * 58.60472 * 24 2 1 45 45 H 1.08998 * 110.48590 * 335.78055 * 25 24 2 46 46 H 1.09003 * 110.48623 * 98.42403 * 25 24 2 47 47 H 1.09008 * 110.75788 * 279.62740 * 26 25 24 48 48 H 1.08999 * 110.91649 * 156.33206 * 26 25 24 49 49 H 1.08997 * 110.49198 * 203.37536 * 27 26 25 50 50 H 1.09000 * 110.59604 * 80.79073 * 27 26 25 51 51 H 1.09008 * 110.02814 * 238.57051 * 28 24 2 52 52 H 1.09001 * 110.02938 * 359.94711 * 28 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7297 -1.6963 -1.1193 6 7 1.7066 -0.2498 -2.4547 7 6 0.8647 0.9416 -2.5889 8 6 2.1954 -0.9399 -3.6508 9 6 1.0848 -1.4701 -4.5686 10 7 1.0840 -0.1558 -5.2377 11 6 0.9622 -0.3065 -6.6939 12 6 0.7184 1.0425 -7.3198 13 8 0.6532 2.0322 -6.6216 14 7 0.5740 1.1494 -8.6556 15 6 0.3528 2.3767 -9.2251 16 1 0.2938 3.2578 -8.6033 17 6 0.2033 2.4869 -10.6021 18 7 0.2746 1.4147 -11.3586 19 14 -0.0974 4.1592 -11.3782 20 1 1.0408 5.0609 -11.0675 21 1 -0.2202 4.0070 -12.8502 22 1 -1.3513 4.7393 -10.8337 23 6 2.4963 -0.0136 -4.8374 24 6 2.0401 -0.7213 1.2491 25 6 1.5923 0.0359 2.5164 26 6 2.7936 -0.1003 3.4846 27 6 4.0123 0.0241 2.5369 28 6 3.5788 -0.7282 1.2624 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.1834 0.6440 -2.6220 33 1 1.0286 1.6003 -1.7361 34 1 1.1225 1.4669 -3.5086 35 1 2.9825 -1.6636 -3.4388 36 1 0.1557 -1.6904 -4.0431 37 1 1.4082 -2.2862 -5.2148 38 1 0.1273 -0.9691 -6.9220 39 1 1.8830 -0.7315 -7.0934 40 1 0.6266 0.3580 -9.2139 41 1 0.1706 1.4917 -12.3200 42 1 3.1963 -0.4409 -5.5554 43 1 2.7633 1.0004 -4.5398 44 1 1.6615 -1.7432 1.2706 45 1 1.4039 1.0848 2.2875 46 1 0.7033 -0.4279 2.9438 47 1 2.7848 -1.0729 3.9768 48 1 2.7931 0.7035 4.2209 49 1 4.8895 -0.4481 2.9792 50 1 4.2170 1.0706 2.3108 51 1 3.9472 -1.7537 1.2910 52 1 3.9620 -0.2185 0.3784 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699720600.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:33 Heat of formation + Delta-G solvation = -35.472355 kcal Electronic energy + Delta-G solvation = -29946.843924 eV Core-core repulsion = 25947.373609 eV Total energy + Delta-G solvation = -3999.470315 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.04949 -39.76633 -38.04226 -37.54234 -35.09219 -33.90981 -33.29595 -31.26753 -29.98604 -28.96421 -27.84801 -27.01026 -25.95092 -25.61008 -24.34813 -23.12668 -20.99341 -20.82403 -19.55145 -19.29707 -18.53330 -17.92808 -17.24208 -16.50624 -16.07581 -15.78642 -15.47102 -15.38382 -15.14350 -14.84149 -14.56436 -14.17165 -13.93952 -13.70980 -13.54872 -13.32495 -13.19749 -12.94931 -12.60963 -12.49222 -12.40689 -12.05012 -11.83049 -11.61830 -11.56537 -11.43946 -11.29435 -11.23222 -11.21237 -11.05620 -10.93369 -10.87247 -10.76231 -10.72636 -10.48437 -10.45148 -10.21683 -9.66223 -9.49694 -8.82226 -8.60891 -8.21366 -7.96708 -6.42059 -3.82984 2.56089 2.88551 3.19137 3.24888 3.29041 3.89658 3.99028 4.21341 4.24009 4.36280 4.39916 4.48850 4.63842 4.84917 4.86124 4.92925 4.99529 5.06928 5.18437 5.25457 5.29470 5.37083 5.37565 5.39963 5.42266 5.46467 5.51402 5.56161 5.57697 5.61291 5.64549 5.67654 5.72113 5.73093 5.79312 5.82199 5.89057 5.92780 5.94416 6.07222 6.17922 6.21238 6.25565 6.26957 6.48438 6.57436 7.10778 7.40807 7.54184 8.05216 8.13521 8.61484 9.17723 9.54250 10.06315 10.75672 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027610 B = 0.001982 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.867568 B =14127.293140 C =14513.102303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.101 4.101 3 H 0.096 0.904 4 C 0.519 3.481 5 O -0.542 6.542 6 N -0.587 5.587 7 C 0.076 3.924 8 C 0.115 3.885 9 C -0.017 4.017 10 N -0.437 5.437 11 C 0.007 3.993 12 C 0.447 3.553 13 O -0.577 6.577 14 N -0.567 5.567 15 C -0.299 4.299 16 H 0.102 0.898 17 C 0.021 3.979 18 N -0.903 5.903 19 Si 0.931 3.069 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.006 4.006 24 C -0.070 4.070 25 C -0.119 4.119 26 C -0.125 4.125 27 C -0.129 4.129 28 C -0.107 4.107 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.391 0.609 41 H 0.272 0.728 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.063 0.937 49 H 0.061 0.939 50 H 0.062 0.938 51 H 0.066 0.934 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.427 -6.248 23.767 24.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.122 4.122 3 H 0.114 0.886 4 C 0.307 3.693 5 O -0.419 6.419 6 N -0.318 5.318 7 C -0.066 4.066 8 C 0.010 3.990 9 C -0.148 4.148 10 N -0.159 5.159 11 C -0.125 4.125 12 C 0.232 3.768 13 O -0.460 6.460 14 N -0.204 5.204 15 C -0.428 4.428 16 H 0.120 0.880 17 C -0.180 4.180 18 N -0.544 5.544 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.136 4.136 24 C -0.089 4.089 25 C -0.157 4.157 26 C -0.163 4.163 27 C -0.167 4.167 28 C -0.145 4.145 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.116 0.884 35 H 0.129 0.871 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.224 0.776 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.082 0.918 49 H 0.080 0.920 50 H 0.081 0.919 51 H 0.084 0.916 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.211 -5.583 24.209 25.051 hybrid contribution 0.297 -0.284 -1.503 1.558 sum 3.508 -5.866 22.705 23.712 Atomic orbital electron populations 1.22083 0.92928 1.02992 1.03621 1.21435 0.97624 1.00541 0.92627 0.88580 1.20716 0.79744 0.84494 0.84304 1.90668 1.38215 1.26555 1.86503 1.47426 1.50765 1.29142 1.04490 1.22059 0.94373 0.86332 1.03834 1.22022 0.97010 0.95424 0.84548 1.24334 1.00280 0.93343 0.96804 1.68856 1.18641 1.20575 1.07817 1.22514 1.01871 0.98152 0.89948 1.19650 0.84504 0.89683 0.82930 1.90502 1.55597 1.38346 1.61597 1.41873 1.63174 1.10189 1.05135 1.19632 1.45847 0.86727 0.90601 0.88027 1.25255 0.97487 0.99034 0.96221 1.69605 1.50281 1.28573 1.05966 0.85921 0.79126 0.81606 0.77580 1.19947 1.20996 1.19907 1.24282 0.91898 1.01690 0.95697 1.21576 0.95862 0.99290 0.92154 1.22456 0.97882 1.00398 0.94943 1.22483 0.94915 1.01474 0.97383 1.22424 0.97723 1.00431 0.96101 1.22083 0.94538 1.00807 0.97073 0.91436 0.90611 0.92293 0.92098 0.91793 0.88351 0.87083 0.89594 0.90553 0.89430 0.92187 0.77566 0.91854 0.90301 0.89010 0.90563 0.91391 0.91665 0.91646 0.91796 0.91998 0.91907 0.91567 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 8.63 37.16 0.32 -0.94 16 2 C -0.10 -0.93 1.22 -91.77 -0.11 -1.04 16 3 H 0.10 0.81 7.37 -51.93 -0.38 0.42 16 4 C 0.52 6.31 6.46 -10.98 -0.07 6.24 16 5 O -0.54 -8.08 14.17 5.56 0.08 -8.00 16 6 N -0.59 -7.08 3.11 -173.62 -0.54 -7.62 16 7 C 0.08 0.87 7.90 59.85 0.47 1.34 16 8 C 0.12 1.44 4.66 -67.72 -0.32 1.12 16 9 C -0.02 -0.21 7.31 -7.54 -0.06 -0.27 16 10 N -0.44 -6.79 4.41 -246.09 -1.09 -7.87 16 11 C 0.01 0.12 5.30 -4.97 -0.03 0.10 16 12 C 0.45 10.38 7.85 -10.98 -0.09 10.29 16 13 O -0.58 -15.32 16.01 5.55 0.09 -15.23 16 14 N -0.57 -14.23 5.29 -10.96 -0.06 -14.29 16 15 C -0.30 -8.27 9.68 -14.94 -0.14 -8.41 16 16 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 17 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 18 N -0.90 -24.47 13.05 55.50 0.72 -23.75 16 19 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 C -0.01 -0.08 6.73 -7.54 -0.05 -0.13 16 24 C -0.07 -0.63 2.12 -89.50 -0.19 -0.82 16 25 C -0.12 -0.84 5.32 -25.07 -0.13 -0.98 16 26 C -0.13 -0.86 6.91 -24.74 -0.17 -1.04 16 27 C -0.13 -1.01 6.83 -25.10 -0.17 -1.18 16 28 C -0.11 -1.05 5.08 -25.64 -0.13 -1.18 16 29 H 0.07 0.44 7.27 -51.93 -0.38 0.06 16 30 H 0.08 0.61 4.53 -51.93 -0.24 0.38 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.69 6.95 -51.93 -0.36 0.33 16 33 H 0.06 0.58 6.01 -51.93 -0.31 0.27 16 34 H 0.10 1.40 5.70 -51.93 -0.30 1.11 16 35 H 0.11 1.40 7.28 -51.93 -0.38 1.02 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 0.84 7.91 -51.93 -0.41 0.42 16 38 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 39 H 0.06 0.92 7.30 -51.93 -0.38 0.54 16 40 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 41 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 42 H 0.08 1.01 7.42 -51.93 -0.39 0.62 16 43 H 0.09 1.38 7.27 -51.93 -0.38 1.00 16 44 H 0.08 0.78 8.13 -51.93 -0.42 0.35 16 45 H 0.07 0.45 7.75 -51.93 -0.40 0.05 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 48 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 49 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 50 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 51 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 52 H 0.06 0.68 6.91 -51.93 -0.36 0.32 16 LS Contribution 398.79 15.07 6.01 6.01 Total: -1.00 -31.79 398.79 -9.48 -41.27 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -8.71 Total: 9.94 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -0.96 Total: 3.59 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.96 Total: -53.52 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: 0.17 Total: -23.23 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.79 -9.48 -41.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699720600.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.794 kcal (2) G-P(sol) polarization free energy of solvation -31.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds