Wall clock time and date at job start Tue Mar 31 2020 20:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47353 * 2 1 4 4 C 1.50697 * 109.47076 * 240.00056 * 2 1 3 5 5 O 1.21287 * 119.99748 * 240.00076 * 4 2 1 6 6 N 1.34779 * 120.00105 * 60.00078 * 4 2 1 7 7 C 1.48141 * 127.83616 * 0.02562 * 6 4 2 8 8 C 1.54395 * 104.61558 * 140.38854 * 7 6 4 9 9 C 1.54289 * 104.95665 * 23.86810 * 8 7 6 10 10 C 1.53006 * 110.34036 * 118.97901 * 9 8 7 11 11 C 1.53006 * 110.34159 * 241.12546 * 9 8 7 12 12 N 1.46898 * 109.47354 * 297.12789 * 11 9 8 13 13 C 1.46897 * 111.00234 * 179.97438 * 12 11 9 14 14 C 1.50700 * 109.47050 * 179.97438 * 13 12 11 15 15 O 1.21290 * 120.00276 * 0.02562 * 14 13 12 16 16 N 1.34782 * 119.99506 * 180.02562 * 14 13 12 17 17 C 1.37098 * 119.99469 * 180.02562 * 16 14 13 18 18 H 1.07999 * 120.00635 * 0.02562 * 17 16 14 19 19 C 1.38948 * 119.99851 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99933 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00266 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46854 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47339 * 119.99739 * 21 19 17 24 24 H 1.48499 * 109.47375 * 239.99925 * 21 19 17 25 25 C 1.48419 * 127.82157 * 180.02562 * 6 4 2 26 26 C 1.52999 * 109.47117 * 120.00190 * 2 1 3 27 27 C 1.52999 * 117.49864 * 248.62201 * 26 2 1 28 28 C 1.52994 * 60.00134 * 252.50830 * 27 26 2 29 29 H 1.08994 * 109.47079 * 300.00192 * 1 2 3 30 30 H 1.08999 * 109.46869 * 59.99793 * 1 2 3 31 31 H 1.08998 * 109.47353 * 179.97438 * 1 2 3 32 32 H 1.09000 * 110.40773 * 21.60926 * 7 6 4 33 33 H 1.08994 * 110.50666 * 259.21756 * 7 6 4 34 34 H 1.08994 * 110.34222 * 264.99787 * 8 7 6 35 35 H 1.09003 * 110.34204 * 142.73295 * 8 7 6 36 36 H 1.09004 * 109.46723 * 182.87624 * 10 9 8 37 37 H 1.08999 * 109.46937 * 302.87075 * 10 9 8 38 38 H 1.08997 * 109.47162 * 62.87277 * 10 9 8 39 39 H 1.08999 * 109.46680 * 57.12728 * 11 9 8 40 40 H 1.08998 * 109.47007 * 177.12589 * 11 9 8 41 41 H 1.00906 * 110.99819 * 303.95366 * 12 11 9 42 42 H 1.08991 * 109.47432 * 300.00539 * 13 12 11 43 43 H 1.09009 * 109.46696 * 60.00292 * 13 12 11 44 44 H 0.96998 * 120.00463 * 0.02562 * 16 14 13 45 45 H 0.96998 * 120.00007 * 179.97438 * 20 19 17 46 46 H 1.09001 * 110.45023 * 100.87457 * 25 6 4 47 47 H 1.09004 * 110.49290 * 338.35628 * 25 6 4 48 48 H 1.09003 * 115.55128 * 34.32663 * 26 2 1 49 49 H 1.09004 * 117.49615 * 0.02562 * 27 26 2 50 50 H 1.09002 * 117.50265 * 145.01410 * 27 26 2 51 51 H 1.09001 * 117.50031 * 252.51445 * 28 27 26 52 52 H 1.09001 * 117.49782 * 107.48839 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7067 -0.2499 -2.4546 7 6 0.8742 0.9285 -2.7904 8 6 1.5835 1.5748 -3.9998 9 6 2.3923 0.4304 -4.6454 10 6 1.9220 0.1911 -6.0816 11 6 3.8869 0.7573 -4.6237 12 7 4.1372 1.9586 -5.4314 13 6 5.5650 2.3037 -5.4331 14 6 5.7825 3.5377 -6.2703 15 8 4.8406 4.0770 -6.8119 16 7 7.0237 4.0421 -6.4173 17 6 7.2214 5.1651 -7.1785 18 1 6.3827 5.6458 -7.6601 19 6 8.5009 5.6855 -7.3297 20 7 9.5213 5.1015 -6.7425 21 14 8.7704 7.2159 -8.3662 22 1 7.4696 7.6787 -8.9131 23 1 9.3616 8.2866 -7.5239 24 1 9.6940 6.8997 -9.4852 25 6 2.1012 -0.8087 -3.7718 26 6 2.0400 -0.7213 1.2492 27 6 2.7419 0.1226 2.3151 28 6 3.5550 -0.8281 1.4343 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 0.8437 1.6238 -1.9515 33 1 -0.1346 0.6182 -3.0628 34 1 2.2510 2.3697 -3.6673 35 1 0.8499 1.9651 -4.7053 36 1 2.4664 -0.6523 -6.5064 37 1 0.8542 -0.0281 -6.0824 38 1 2.1102 1.0832 -6.6789 39 1 4.2045 0.9373 -3.5967 40 1 4.4482 -0.0812 -5.0360 41 1 3.7923 1.8400 -6.3722 42 1 5.8940 2.4945 -4.4117 43 1 6.1383 1.4760 -5.8509 44 1 7.7770 3.6107 -5.9846 45 1 10.4145 5.4646 -6.8483 46 1 1.2846 -1.3912 -4.1984 47 1 2.9963 -1.4230 -3.6731 48 1 1.4310 -1.5585 1.5902 49 1 2.8399 1.1917 2.1265 50 1 2.5946 -0.1593 3.3577 51 1 3.9427 -1.7356 1.8974 52 1 4.1884 -0.3845 0.6661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699832353.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:44 Heat of formation + Delta-G solvation = -48.871396 kcal Electronic energy + Delta-G solvation = -29670.362200 eV Core-core repulsion = 25670.310859 eV Total energy + Delta-G solvation = -4000.051341 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.64887 -38.96960 -38.13954 -37.00028 -35.42362 -33.93566 -33.22259 -31.93863 -31.19026 -29.79575 -27.51543 -26.93079 -25.35696 -24.68255 -23.41967 -22.87338 -22.51484 -21.32242 -19.53739 -19.22291 -18.85215 -17.88920 -17.23955 -16.32573 -16.10725 -15.90922 -15.49963 -15.18008 -14.92188 -14.85002 -14.45635 -14.15944 -13.94148 -13.81499 -13.71898 -13.27079 -13.09730 -12.92448 -12.77572 -12.52937 -12.37117 -12.27505 -12.10004 -11.95493 -11.70765 -11.63551 -11.53351 -11.37800 -11.33725 -11.06543 -10.91935 -10.71902 -10.63038 -10.57045 -10.34829 -10.29929 -10.22633 -9.73605 -9.52210 -8.89362 -8.45708 -8.05078 -7.95845 -6.41887 -3.82770 2.49839 2.69844 3.15975 3.26494 3.33612 3.62346 3.90820 4.01980 4.20283 4.24299 4.36898 4.46482 4.56549 4.61797 4.73383 4.81667 4.89475 4.95727 4.99879 5.05198 5.14142 5.16710 5.19591 5.26131 5.35775 5.37083 5.44550 5.47306 5.50725 5.54691 5.61951 5.69409 5.70157 5.74168 5.77739 5.79988 5.87259 5.91951 5.99032 6.00349 6.02062 6.04562 6.23532 6.27756 6.32622 7.21218 7.38848 7.55122 7.67549 8.02667 8.06392 8.61057 9.17704 9.54419 10.05592 10.75963 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014821 B = 0.002174 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.741542 B =12873.824731 C =13902.615105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 H 0.097 0.903 4 C 0.538 3.462 5 O -0.534 6.534 6 N -0.622 5.622 7 C 0.097 3.903 8 C -0.118 4.118 9 C -0.070 4.070 10 C -0.143 4.143 11 C 0.074 3.926 12 N -0.666 5.666 13 C 0.050 3.950 14 C 0.442 3.558 15 O -0.584 6.584 16 N -0.564 5.564 17 C -0.298 4.298 18 H 0.103 0.897 19 C 0.021 3.979 20 N -0.902 5.902 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.282 1.282 25 C 0.114 3.886 26 C -0.137 4.137 27 C -0.183 4.183 28 C -0.156 4.156 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.027 0.973 41 H 0.349 0.651 42 H 0.084 0.916 43 H 0.042 0.958 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.072 0.928 47 H 0.082 0.918 48 H 0.106 0.894 49 H 0.094 0.906 50 H 0.094 0.906 51 H 0.093 0.907 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.578 -12.703 13.328 25.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 H 0.115 0.885 4 C 0.327 3.673 5 O -0.411 6.411 6 N -0.357 5.357 7 C -0.026 4.026 8 C -0.157 4.157 9 C -0.072 4.072 10 C -0.200 4.200 11 C -0.056 4.056 12 N -0.299 5.299 13 C -0.083 4.083 14 C 0.227 3.773 15 O -0.468 6.468 16 N -0.201 5.201 17 C -0.428 4.428 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.543 5.543 21 Si 0.757 3.243 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.208 1.208 25 C -0.009 4.009 26 C -0.155 4.155 27 C -0.220 4.220 28 C -0.193 4.193 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.045 0.955 41 H 0.169 0.831 42 H 0.102 0.898 43 H 0.060 0.940 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.100 0.900 48 H 0.124 0.876 49 H 0.112 0.888 50 H 0.112 0.888 51 H 0.112 0.888 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.752 -12.421 13.639 25.601 hybrid contribution 1.153 -0.166 -0.825 1.428 sum -16.599 -12.588 12.814 24.457 Atomic orbital electron populations 1.21865 0.92579 1.02822 1.03043 1.20840 0.97539 0.99979 0.91422 0.88526 1.20272 0.79778 0.84364 0.82909 1.90707 1.37992 1.26444 1.85910 1.49050 1.51593 1.29950 1.05094 1.22583 0.94303 0.87238 0.98498 1.22595 0.99307 0.97771 0.95985 1.21467 0.95636 0.94572 0.95495 1.21896 1.00945 1.02399 0.94803 1.21971 0.93743 0.91151 0.98743 1.60092 1.15675 1.35203 1.18953 1.21665 0.89073 0.96702 1.00818 1.19803 0.83975 0.87367 0.86126 1.90513 1.41330 1.62815 1.52134 1.41882 1.06941 1.26122 1.45157 1.19747 0.94369 1.03108 1.25562 0.87870 1.25273 0.95052 0.99546 0.98164 1.69623 0.99786 1.40988 1.43918 0.85801 0.78541 0.80817 0.79187 1.19215 1.20742 1.20774 1.22451 1.00931 0.95570 0.81924 1.21928 0.96267 1.01546 0.95764 1.23098 1.05020 0.97665 0.96201 1.22786 0.93393 1.01082 1.01996 0.91250 0.91489 0.92150 0.90226 0.91145 0.89214 0.90121 0.92607 0.92254 0.91037 0.91182 0.95456 0.83060 0.89751 0.93968 0.77466 0.91920 0.90947 0.89984 0.87621 0.88804 0.88765 0.88845 0.88907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.93 37.16 0.33 -0.60 16 2 C -0.08 -0.66 2.21 -91.77 -0.20 -0.86 16 3 H 0.10 0.77 7.71 -51.93 -0.40 0.37 16 4 C 0.54 6.17 7.14 -10.99 -0.08 6.09 16 5 O -0.53 -8.02 15.35 5.55 0.09 -7.93 16 6 N -0.62 -6.21 3.31 -169.09 -0.56 -6.77 16 7 C 0.10 0.75 5.25 -2.41 -0.01 0.74 16 8 C -0.12 -1.12 6.08 -25.33 -0.15 -1.28 16 9 C -0.07 -0.70 0.82 -153.10 -0.13 -0.83 16 10 C -0.14 -1.30 7.90 37.16 0.29 -1.01 16 11 C 0.07 0.92 4.38 -3.82 -0.02 0.90 16 12 N -0.67 -10.38 5.65 -115.06 -0.65 -11.03 16 13 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 14 C 0.44 10.40 7.82 -10.98 -0.09 10.31 16 15 O -0.58 -15.66 15.78 5.55 0.09 -15.57 16 16 N -0.56 -14.36 5.29 -10.96 -0.06 -14.42 16 17 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 18 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 19 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 20 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 21 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 C 0.11 1.13 6.16 -2.26 -0.01 1.12 16 26 C -0.14 -1.22 4.72 -90.62 -0.43 -1.65 16 27 C -0.18 -1.43 10.18 -26.73 -0.27 -1.70 16 28 C -0.16 -1.54 8.97 -26.73 -0.24 -1.78 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.38 5.35 -51.93 -0.28 0.10 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.53 6.57 -51.93 -0.34 0.19 16 33 H 0.07 0.44 8.01 -51.93 -0.42 0.02 16 34 H 0.09 1.05 7.53 -51.93 -0.39 0.66 16 35 H 0.08 0.71 7.71 -51.93 -0.40 0.31 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.75 6.60 -51.93 -0.34 0.41 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.35 5.58 6.51 -39.29 -0.26 5.32 16 42 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 43 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 44 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.07 0.63 7.86 -51.93 -0.41 0.22 16 47 H 0.08 0.94 7.61 -51.93 -0.40 0.54 16 48 H 0.11 0.92 8.11 -51.93 -0.42 0.50 16 49 H 0.09 0.69 8.05 -51.93 -0.42 0.27 16 50 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 51 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 52 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 LS Contribution 411.72 15.07 6.20 6.20 Total: -1.00 -32.60 411.72 -9.41 -42.02 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -8.95 Total: 13.09 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -1.28 Total: 2.32 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: -0.54 Total: -56.17 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: 0.17 Total: -23.50 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.60 -9.41 -42.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699832353.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.852 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds