Wall clock time and date at job start Tue Mar 31 2020 20:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47353 * 2 1 4 4 C 1.50697 * 109.47076 * 240.00056 * 2 1 3 5 5 O 1.21287 * 119.99748 * 240.00076 * 4 2 1 6 6 N 1.34779 * 120.00105 * 60.00078 * 4 2 1 7 7 C 1.48141 * 127.83616 * 0.02562 * 6 4 2 8 8 C 1.54395 * 104.61558 * 140.38854 * 7 6 4 9 9 C 1.54289 * 104.95665 * 23.86810 * 8 7 6 10 10 C 1.53006 * 110.34036 * 118.97901 * 9 8 7 11 11 C 1.53006 * 110.34159 * 241.12546 * 9 8 7 12 12 N 1.46898 * 109.47354 * 297.12789 * 11 9 8 13 13 C 1.46897 * 111.00234 * 179.97438 * 12 11 9 14 14 C 1.50700 * 109.47050 * 179.97438 * 13 12 11 15 15 O 1.21290 * 120.00276 * 0.02562 * 14 13 12 16 16 N 1.34782 * 119.99506 * 180.02562 * 14 13 12 17 17 C 1.37098 * 119.99469 * 180.02562 * 16 14 13 18 18 H 1.07999 * 120.00635 * 0.02562 * 17 16 14 19 19 C 1.38948 * 119.99851 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99933 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00266 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46854 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47339 * 119.99739 * 21 19 17 24 24 H 1.48499 * 109.47375 * 239.99925 * 21 19 17 25 25 C 1.48419 * 127.82157 * 180.02562 * 6 4 2 26 26 C 1.52999 * 109.47117 * 120.00190 * 2 1 3 27 27 C 1.52999 * 117.49864 * 248.62201 * 26 2 1 28 28 C 1.52994 * 60.00134 * 252.50830 * 27 26 2 29 29 H 1.08994 * 109.47079 * 300.00192 * 1 2 3 30 30 H 1.08999 * 109.46869 * 59.99793 * 1 2 3 31 31 H 1.08998 * 109.47353 * 179.97438 * 1 2 3 32 32 H 1.09000 * 110.40773 * 21.60926 * 7 6 4 33 33 H 1.08994 * 110.50666 * 259.21756 * 7 6 4 34 34 H 1.08994 * 110.34222 * 264.99787 * 8 7 6 35 35 H 1.09003 * 110.34204 * 142.73295 * 8 7 6 36 36 H 1.09004 * 109.46723 * 182.87624 * 10 9 8 37 37 H 1.08999 * 109.46937 * 302.87075 * 10 9 8 38 38 H 1.08997 * 109.47162 * 62.87277 * 10 9 8 39 39 H 1.08999 * 109.46680 * 57.12728 * 11 9 8 40 40 H 1.08998 * 109.47007 * 177.12589 * 11 9 8 41 41 H 1.00906 * 110.99819 * 303.95366 * 12 11 9 42 42 H 1.08991 * 109.47432 * 300.00539 * 13 12 11 43 43 H 1.09009 * 109.46696 * 60.00292 * 13 12 11 44 44 H 0.96998 * 120.00463 * 0.02562 * 16 14 13 45 45 H 0.96998 * 120.00007 * 179.97438 * 20 19 17 46 46 H 1.09001 * 110.45023 * 100.87457 * 25 6 4 47 47 H 1.09004 * 110.49290 * 338.35628 * 25 6 4 48 48 H 1.09003 * 115.55128 * 34.32663 * 26 2 1 49 49 H 1.09004 * 117.49615 * 0.02562 * 27 26 2 50 50 H 1.09002 * 117.50265 * 145.01410 * 27 26 2 51 51 H 1.09001 * 117.50031 * 252.51445 * 28 27 26 52 52 H 1.09001 * 117.49782 * 107.48839 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7067 -0.2499 -2.4546 7 6 0.8742 0.9285 -2.7904 8 6 1.5835 1.5748 -3.9998 9 6 2.3923 0.4304 -4.6454 10 6 1.9220 0.1911 -6.0816 11 6 3.8869 0.7573 -4.6237 12 7 4.1372 1.9586 -5.4314 13 6 5.5650 2.3037 -5.4331 14 6 5.7825 3.5377 -6.2703 15 8 4.8406 4.0770 -6.8119 16 7 7.0237 4.0421 -6.4173 17 6 7.2214 5.1651 -7.1785 18 1 6.3827 5.6458 -7.6601 19 6 8.5009 5.6855 -7.3297 20 7 9.5213 5.1015 -6.7425 21 14 8.7704 7.2159 -8.3662 22 1 7.4696 7.6787 -8.9131 23 1 9.3616 8.2866 -7.5239 24 1 9.6940 6.8997 -9.4852 25 6 2.1012 -0.8087 -3.7718 26 6 2.0400 -0.7213 1.2492 27 6 2.7419 0.1226 2.3151 28 6 3.5550 -0.8281 1.4343 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 0.8437 1.6238 -1.9515 33 1 -0.1346 0.6182 -3.0628 34 1 2.2510 2.3697 -3.6673 35 1 0.8499 1.9651 -4.7053 36 1 2.4664 -0.6523 -6.5064 37 1 0.8542 -0.0281 -6.0824 38 1 2.1102 1.0832 -6.6789 39 1 4.2045 0.9373 -3.5967 40 1 4.4482 -0.0812 -5.0360 41 1 3.7923 1.8400 -6.3722 42 1 5.8940 2.4945 -4.4117 43 1 6.1383 1.4760 -5.8509 44 1 7.7770 3.6107 -5.9846 45 1 10.4145 5.4646 -6.8483 46 1 1.2846 -1.3912 -4.1984 47 1 2.9963 -1.4230 -3.6731 48 1 1.4310 -1.5585 1.5902 49 1 2.8399 1.1917 2.1265 50 1 2.5946 -0.1593 3.3577 51 1 3.9427 -1.7356 1.8974 52 1 4.1884 -0.3845 0.6661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699832353.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:43 Heat of formation + Delta-G solvation = -70.473540 kcal Electronic energy + Delta-G solvation = -29671.298939 eV Core-core repulsion = 25670.310859 eV Total energy + Delta-G solvation = -4000.988080 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.46846 -40.24127 -39.58512 -37.81597 -36.64067 -35.85427 -34.18293 -33.27456 -32.68706 -30.56555 -28.93906 -27.72245 -26.74701 -25.71983 -24.58330 -23.76952 -23.22335 -22.04014 -21.16437 -20.23423 -19.93061 -19.70338 -18.17236 -17.66208 -17.10728 -16.97823 -16.70764 -16.48147 -16.07772 -15.92241 -15.64231 -15.47532 -15.22255 -15.06339 -14.69466 -14.42355 -14.15002 -13.95676 -13.59813 -13.49490 -13.47981 -13.25640 -13.15049 -13.00150 -12.93986 -12.84588 -12.66517 -12.41575 -12.38669 -12.28279 -12.11407 -11.99113 -11.76232 -11.54429 -11.51815 -11.41012 -11.35583 -10.98449 -10.57329 -10.35616 -10.03047 -9.70469 -9.35625 -8.47762 -5.96775 1.36177 1.41490 1.55964 1.65449 1.93716 2.03039 2.28111 2.85503 2.93098 3.19334 3.41967 3.57208 3.62826 3.69931 3.76510 3.87574 3.92875 4.16813 4.20315 4.23623 4.28345 4.33905 4.35703 4.40932 4.44718 4.51637 4.56045 4.62458 4.65452 4.70517 4.77728 4.79982 4.86891 4.88704 4.94236 5.01767 5.02615 5.06232 5.19281 5.21645 5.24849 5.28645 5.35655 5.40127 5.44420 5.53199 5.85254 6.06581 6.40087 6.58108 6.59738 7.11059 7.18329 7.54343 8.08825 8.70007 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014821 B = 0.002174 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.741542 B =12873.824731 C =13902.615105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.073 4.073 3 H 0.104 0.896 4 C 0.530 3.470 5 O -0.579 6.579 6 N -0.623 5.623 7 C 0.100 3.900 8 C -0.117 4.117 9 C -0.064 4.064 10 C -0.138 4.138 11 C 0.078 3.922 12 N -0.670 5.670 13 C 0.063 3.937 14 C 0.441 3.559 15 O -0.619 6.619 16 N -0.574 5.574 17 C -0.331 4.331 18 H 0.081 0.919 19 C -0.015 4.015 20 N -0.922 5.922 21 Si 0.994 3.006 22 H -0.271 1.271 23 H -0.271 1.271 24 H -0.271 1.271 25 C 0.116 3.884 26 C -0.141 4.141 27 C -0.162 4.162 28 C -0.179 4.179 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.031 0.969 41 H 0.347 0.653 42 H 0.097 0.903 43 H 0.061 0.939 44 H 0.395 0.605 45 H 0.277 0.723 46 H 0.092 0.908 47 H 0.062 0.938 48 H 0.107 0.893 49 H 0.101 0.899 50 H 0.110 0.890 51 H 0.090 0.910 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.152 -12.422 13.835 26.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.094 4.094 3 H 0.122 0.878 4 C 0.321 3.679 5 O -0.459 6.459 6 N -0.356 5.356 7 C -0.022 4.022 8 C -0.155 4.155 9 C -0.066 4.066 10 C -0.196 4.196 11 C -0.051 4.051 12 N -0.304 5.304 13 C -0.069 4.069 14 C 0.228 3.772 15 O -0.505 6.505 16 N -0.212 5.212 17 C -0.461 4.461 18 H 0.099 0.901 19 C -0.215 4.215 20 N -0.563 5.563 21 Si 0.818 3.182 22 H -0.196 1.196 23 H -0.197 1.197 24 H -0.196 1.196 25 C -0.007 4.007 26 C -0.159 4.159 27 C -0.198 4.198 28 C -0.216 4.216 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.049 0.951 41 H 0.167 0.833 42 H 0.115 0.885 43 H 0.079 0.921 44 H 0.229 0.771 45 H 0.087 0.913 46 H 0.110 0.890 47 H 0.081 0.919 48 H 0.125 0.875 49 H 0.120 0.880 50 H 0.128 0.872 51 H 0.108 0.892 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.336 -12.142 14.153 26.863 hybrid contribution 1.642 -0.292 -0.985 1.937 sum -17.694 -12.434 13.168 25.320 Atomic orbital electron populations 1.21859 0.90515 1.02932 1.04431 1.20885 0.99127 0.99669 0.89725 0.87783 1.20847 0.79130 0.84003 0.83965 1.90683 1.40033 1.28563 1.86603 1.49148 1.51375 1.30346 1.04769 1.22734 0.94710 0.86531 0.98208 1.22550 0.99130 0.96891 0.96933 1.21402 0.93815 0.94948 0.96393 1.21862 1.02370 1.01786 0.93592 1.21981 0.95883 0.89877 0.97373 1.60085 1.14114 1.37037 1.19177 1.21517 0.90933 0.94335 1.00162 1.20757 0.82812 0.88220 0.85399 1.90481 1.42242 1.64264 1.53512 1.41960 1.07780 1.26010 1.45416 1.19715 0.94399 1.04710 1.27277 0.90121 1.26083 0.94338 1.02182 0.98882 1.69687 1.00205 1.42076 1.44370 0.84848 0.78267 0.77244 0.77841 1.19590 1.19653 1.19615 1.22445 1.00885 0.95296 0.82114 1.22024 0.95307 1.02086 0.96499 1.23161 1.02540 0.97593 0.96543 1.22727 0.94114 1.01942 1.02807 0.89610 0.90344 0.92668 0.88821 0.88507 0.91684 0.89083 0.92295 0.90117 0.92538 0.92286 0.95107 0.83258 0.88535 0.92104 0.77110 0.91318 0.89019 0.91930 0.87492 0.88041 0.87206 0.89168 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.93 71.98 0.64 -0.79 16 2 C -0.07 -1.15 2.21 -11.54 -0.03 -1.18 16 3 H 0.10 1.48 7.71 -2.39 -0.02 1.46 16 4 C 0.53 11.89 7.14 87.66 0.63 12.52 16 5 O -0.58 -17.80 15.35 -3.05 -0.05 -17.85 16 6 N -0.62 -11.60 3.31 -807.25 -2.67 -14.27 16 7 C 0.10 1.29 5.25 86.54 0.45 1.74 16 8 C -0.12 -2.03 6.08 31.50 0.19 -1.84 16 9 C -0.06 -1.20 0.82 -51.27 -0.04 -1.25 16 10 C -0.14 -2.29 7.90 71.98 0.57 -1.72 16 11 C 0.08 1.91 4.38 86.31 0.38 2.29 16 12 N -0.67 -20.75 5.65 -517.93 -2.93 -23.67 16 13 C 0.06 2.23 6.17 85.56 0.53 2.75 16 14 C 0.44 21.06 7.82 87.66 0.69 21.75 16 15 O -0.62 -33.90 15.78 -3.06 -0.05 -33.95 16 16 N -0.57 -29.80 5.29 -306.98 -1.62 -31.42 16 17 C -0.33 -18.90 9.68 84.04 0.81 -18.08 16 18 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 19 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 20 N -0.92 -50.29 13.05 21.66 0.28 -50.01 16 21 Si 0.99 43.00 29.55 68.60 2.03 45.03 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 25 C 0.12 2.15 6.16 86.48 0.53 2.69 16 26 C -0.14 -2.40 4.72 -10.79 -0.05 -2.45 16 27 C -0.16 -2.30 10.18 30.59 0.31 -1.98 16 28 C -0.18 -3.61 8.97 30.59 0.27 -3.33 16 29 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.08 0.61 5.35 -2.39 -0.01 0.60 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.09 0.98 6.57 -2.39 -0.02 0.96 16 33 H 0.10 0.82 8.01 -2.39 -0.02 0.80 16 34 H 0.06 1.48 7.53 -2.39 -0.02 1.46 16 35 H 0.09 1.41 7.71 -2.39 -0.02 1.39 16 36 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.06 1.13 6.60 -2.39 -0.02 1.11 16 39 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 40 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.35 11.05 6.51 -89.69 -0.58 10.47 16 42 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 43 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 44 H 0.40 19.65 7.90 -92.71 -0.73 18.92 16 45 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 46 H 0.09 1.38 7.86 -2.39 -0.02 1.36 16 47 H 0.06 1.43 7.61 -2.39 -0.02 1.41 16 48 H 0.11 1.77 8.11 -2.39 -0.02 1.75 16 49 H 0.10 1.29 8.05 -2.39 -0.02 1.27 16 50 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 51 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 52 H 0.07 1.73 8.10 -2.39 -0.02 1.71 16 Total: -1.00 -72.06 411.72 0.96 -71.11 By element: Atomic # 1 Polarization: 44.68 SS G_CDS: -0.39 Total: 44.28 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 6.36 Total: 10.76 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -6.94 Total: -119.37 kcal Atomic # 8 Polarization: -51.71 SS G_CDS: -0.10 Total: -51.80 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -72.06 0.96 -71.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699832353.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.633 kcal (2) G-P(sol) polarization free energy of solvation -72.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds