Wall clock time and date at job start Tue Mar 31 2020 20:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47222 * 2 1 4 4 C 1.50698 * 109.47111 * 120.00297 * 2 1 3 5 5 O 1.21287 * 120.00057 * 93.76182 * 4 2 1 6 6 N 1.34777 * 120.00197 * 273.75897 * 4 2 1 7 7 C 1.47485 * 127.02839 * 354.68544 * 6 4 2 8 8 C 1.54003 * 107.07980 * 154.51637 * 7 6 4 9 9 C 1.54618 * 105.04677 * 1.30117 * 8 7 6 10 10 C 1.52992 * 110.73945 * 263.51337 * 9 8 7 11 11 C 1.53003 * 110.73833 * 140.18730 * 9 8 7 12 12 N 1.46893 * 109.47255 * 61.45588 * 11 9 8 13 13 C 1.46902 * 111.00246 * 179.97438 * 12 11 9 14 14 C 1.50698 * 109.47188 * 179.97438 * 13 12 11 15 15 O 1.21290 * 120.00339 * 0.02562 * 14 13 12 16 16 N 1.34781 * 119.99752 * 179.97438 * 14 13 12 17 17 C 1.37095 * 119.99778 * 180.02562 * 16 14 13 18 18 H 1.08006 * 120.00021 * 0.02562 * 17 16 14 19 19 C 1.38948 * 119.99989 * 180.02562 * 17 16 14 20 20 N 1.31410 * 120.00026 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00169 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.47077 * 59.99860 * 21 19 17 23 23 H 1.48498 * 109.47129 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47289 * 300.00174 * 21 19 17 25 25 C 1.48113 * 127.03559 * 174.63656 * 6 4 2 26 26 C 1.53006 * 109.46985 * 240.00582 * 2 1 3 27 27 C 1.52998 * 117.50034 * 128.62549 * 26 2 1 28 28 C 1.52997 * 117.50140 * 59.99659 * 26 2 1 29 29 H 1.09001 * 109.47071 * 304.73203 * 1 2 3 30 30 H 1.09002 * 109.47107 * 64.72568 * 1 2 3 31 31 H 1.09002 * 109.47101 * 184.73047 * 1 2 3 32 32 H 1.08997 * 109.91718 * 35.15461 * 7 6 4 33 33 H 1.09002 * 109.91046 * 273.87133 * 7 6 4 34 34 H 1.09004 * 110.32758 * 120.19503 * 8 7 6 35 35 H 1.09002 * 110.32426 * 242.40973 * 8 7 6 36 36 H 1.08996 * 109.47512 * 58.54551 * 10 9 8 37 37 H 1.09004 * 109.47089 * 178.54496 * 10 9 8 38 38 H 1.08999 * 109.47091 * 298.54508 * 10 9 8 39 39 H 1.09001 * 109.46924 * 181.45469 * 11 9 8 40 40 H 1.09003 * 109.47181 * 301.45172 * 11 9 8 41 41 H 1.00909 * 111.00460 * 303.95391 * 12 11 9 42 42 H 1.08997 * 109.47279 * 300.00228 * 13 12 11 43 43 H 1.08999 * 109.46767 * 59.99951 * 13 12 11 44 44 H 0.96996 * 120.00366 * 0.02562 * 16 14 13 45 45 H 0.97001 * 120.00263 * 179.97438 * 20 19 17 46 46 H 1.09006 * 110.66141 * 100.88988 * 25 6 4 47 47 H 1.09004 * 110.80337 * 337.84185 * 25 6 4 48 48 H 1.09002 * 115.54339 * 274.32829 * 26 2 1 49 49 H 1.09000 * 117.49898 * 359.97438 * 27 26 2 50 50 H 1.08999 * 117.49987 * 145.01975 * 27 26 2 51 51 H 1.09002 * 117.49901 * 214.98057 * 28 26 2 52 52 H 1.08997 * 117.49868 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.2995 -1.8925 1.1816 6 7 2.1848 -0.0323 2.3851 7 6 2.0133 1.4177 2.5929 8 6 1.6535 1.6226 4.0762 9 6 1.6672 0.2045 4.6922 10 6 0.2540 -0.3798 4.7383 11 6 2.2919 0.2265 6.0888 12 7 1.4915 1.0872 6.9698 13 6 2.0624 1.1319 8.3226 14 6 1.2167 2.0229 9.1955 15 8 0.2347 2.5667 8.7362 16 7 1.5510 2.2146 10.4871 17 6 0.7814 3.0246 11.2813 18 1 -0.0931 3.5089 10.8722 19 6 1.1263 3.2227 12.6127 20 7 2.1899 2.6332 13.1106 21 14 0.0772 4.3260 13.6952 22 1 -1.3052 3.7870 13.7591 23 1 0.6541 4.3709 15.0628 24 1 0.0481 5.6966 13.1244 25 6 2.5580 -0.5909 3.7051 26 6 2.0400 -0.7212 -1.2494 27 6 3.0742 0.0053 -2.1117 28 6 1.6357 -0.1494 -2.6097 29 1 -0.3633 0.5855 0.8446 30 1 -0.3633 0.4388 -0.9293 31 1 -0.3633 -1.0242 0.0848 32 1 1.2076 1.7906 1.9605 33 1 2.9423 1.9384 2.3608 34 1 2.3973 2.2539 4.5625 35 1 0.6618 2.0656 4.1676 36 1 -0.1575 -0.4154 3.7297 37 1 0.2910 -1.3878 5.1515 38 1 -0.3782 0.2475 5.3667 39 1 2.3147 -0.7857 6.4925 40 1 3.3082 0.6156 6.0261 41 1 1.4013 2.0153 6.5842 42 1 2.0833 0.1260 8.7416 43 1 3.0772 1.5271 8.2757 44 1 2.3361 1.7794 10.8546 45 1 2.4310 2.7717 14.0399 46 1 3.6136 -0.4154 3.9126 47 1 2.3297 -1.6557 3.7535 48 1 2.1267 -1.8044 -1.1643 49 1 3.3909 0.9971 -1.7893 50 1 3.8416 -0.6000 -2.5942 51 1 1.4568 -0.8564 -3.4198 52 1 1.0067 0.7408 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699832354.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:49 Heat of formation + Delta-G solvation = -54.453751 kcal Electronic energy + Delta-G solvation = -29228.874877 eV Core-core repulsion = 25228.581467 eV Total energy + Delta-G solvation = -4000.293410 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.71384 -39.00805 -38.17194 -37.33612 -35.44160 -33.91710 -32.99175 -31.94990 -31.19779 -29.95956 -27.49386 -27.11805 -25.45985 -24.71053 -23.43739 -23.15760 -22.66389 -21.02388 -19.61484 -19.21663 -18.88223 -17.90975 -17.49290 -16.54852 -16.37517 -15.79765 -15.43205 -15.03012 -14.86521 -14.69982 -14.62398 -14.46751 -13.96955 -13.86803 -13.60945 -13.48176 -13.20015 -13.06204 -12.78452 -12.51982 -12.43164 -12.34548 -12.11278 -11.96014 -11.83820 -11.75412 -11.53145 -11.41151 -11.34121 -11.02682 -10.89689 -10.78449 -10.73571 -10.70607 -10.45125 -10.42805 -10.22189 -9.91168 -9.50821 -8.92400 -8.46925 -8.06115 -7.96587 -6.42403 -3.83368 2.38468 2.64527 3.19347 3.25230 3.29457 3.40823 3.90017 3.98522 4.10012 4.20881 4.27016 4.31830 4.50435 4.51946 4.68072 4.73820 4.82606 4.94986 4.98529 5.02404 5.04738 5.07267 5.17586 5.22736 5.25099 5.30019 5.33841 5.43985 5.45814 5.50824 5.55348 5.59561 5.68469 5.71901 5.73221 5.76140 5.80234 5.89532 5.94353 5.96345 5.97995 6.09963 6.15450 6.25784 6.42001 7.19004 7.29515 7.54101 7.64631 7.92379 8.05274 8.60449 9.16954 9.53577 10.04944 10.75191 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.035386 B = 0.001708 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.074136 B =16394.252750 C =16644.402503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.075 4.075 3 H 0.089 0.911 4 C 0.542 3.458 5 O -0.540 6.540 6 N -0.618 5.618 7 C 0.101 3.899 8 C -0.129 4.129 9 C -0.068 4.068 10 C -0.125 4.125 11 C 0.074 3.926 12 N -0.664 5.664 13 C 0.051 3.949 14 C 0.441 3.559 15 O -0.584 6.584 16 N -0.564 5.564 17 C -0.300 4.300 18 H 0.102 0.898 19 C 0.023 3.977 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.274 1.274 25 C 0.113 3.887 26 C -0.141 4.141 27 C -0.180 4.180 28 C -0.175 4.175 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.029 0.971 41 H 0.348 0.652 42 H 0.086 0.914 43 H 0.042 0.958 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.071 0.929 47 H 0.085 0.915 48 H 0.118 0.882 49 H 0.093 0.907 50 H 0.094 0.906 51 H 0.095 0.905 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.862 -4.459 -26.629 27.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.096 4.096 3 H 0.107 0.893 4 C 0.330 3.670 5 O -0.417 6.417 6 N -0.352 5.352 7 C -0.023 4.023 8 C -0.167 4.167 9 C -0.069 4.069 10 C -0.182 4.182 11 C -0.056 4.056 12 N -0.297 5.297 13 C -0.082 4.082 14 C 0.226 3.774 15 O -0.468 6.468 16 N -0.200 5.200 17 C -0.430 4.430 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.010 4.010 26 C -0.159 4.159 27 C -0.217 4.217 28 C -0.212 4.212 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.047 0.953 41 H 0.168 0.832 42 H 0.104 0.896 43 H 0.060 0.940 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.103 0.897 48 H 0.136 0.864 49 H 0.112 0.888 50 H 0.113 0.887 51 H 0.114 0.886 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.960 -5.258 -26.699 27.282 hybrid contribution 0.961 0.926 0.815 1.564 sum 2.922 -4.333 -25.884 26.406 Atomic orbital electron populations 1.21703 0.92028 1.03167 1.02719 1.20794 0.97744 0.99570 0.91509 0.89289 1.20154 0.76920 0.86796 0.83087 1.90689 1.50838 1.15904 1.84248 1.48752 1.68790 1.08995 1.08687 1.22166 1.01233 0.81104 0.97761 1.22643 1.03462 0.97132 0.93466 1.21654 0.96831 0.94718 0.93720 1.21647 0.94497 1.01100 1.01004 1.21901 0.93811 0.98777 0.91159 1.60022 1.51073 1.17438 1.01179 1.21670 0.95825 1.00685 0.90032 1.19806 0.87949 0.86291 0.83335 1.90516 1.29293 1.53118 1.73878 1.41860 1.26722 1.43154 1.08277 1.19653 1.08661 1.23368 0.91325 0.87977 1.25259 0.96952 0.98273 0.97413 1.69603 1.25303 1.43642 1.15747 0.85918 0.79681 0.80146 0.78463 1.19888 1.20983 1.19939 1.22521 0.98260 0.99257 0.80940 1.22150 1.03625 1.00285 0.89843 1.23046 0.92688 1.01882 1.04107 1.22962 0.98009 1.03238 0.96997 0.91920 0.91148 0.91725 0.90695 0.91450 0.90459 0.89560 0.93608 0.92759 0.90508 0.90673 0.95253 0.83202 0.89588 0.93960 0.77463 0.91822 0.91053 0.89671 0.86367 0.88844 0.88709 0.88605 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.08 37.16 0.34 -0.62 16 2 C -0.07 -0.59 2.24 -91.77 -0.21 -0.80 16 3 H 0.09 0.58 7.00 -51.93 -0.36 0.21 16 4 C 0.54 5.98 6.98 -10.99 -0.08 5.90 16 5 O -0.54 -7.97 16.07 5.55 0.09 -7.88 16 6 N -0.62 -6.00 3.20 -169.76 -0.54 -6.54 16 7 C 0.10 0.75 6.46 -2.98 -0.02 0.73 16 8 C -0.13 -1.11 5.14 -25.36 -0.13 -1.24 16 9 C -0.07 -0.67 0.74 -152.64 -0.11 -0.79 16 10 C -0.13 -1.39 8.32 37.15 0.31 -1.08 16 11 C 0.07 0.83 4.58 -3.83 -0.02 0.81 16 12 N -0.66 -9.92 5.57 -115.06 -0.64 -10.56 16 13 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 14 C 0.44 10.18 7.82 -10.98 -0.09 10.09 16 15 O -0.58 -15.48 15.78 5.55 0.09 -15.39 16 16 N -0.56 -14.11 5.29 -10.96 -0.06 -14.17 16 17 C -0.30 -8.31 9.68 -14.94 -0.14 -8.46 16 18 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -24.35 13.05 55.50 0.72 -23.63 16 21 Si 0.93 20.90 29.55 -169.99 -5.02 15.87 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 25 C 0.11 1.13 5.96 -2.13 -0.01 1.12 16 26 C -0.14 -1.14 4.97 -90.62 -0.45 -1.59 16 27 C -0.18 -1.21 10.18 -26.73 -0.27 -1.48 16 28 C -0.18 -1.06 9.67 -26.73 -0.26 -1.32 16 29 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 30 H 0.07 0.38 7.13 -51.93 -0.37 0.01 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.46 6.94 -51.93 -0.36 0.10 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.65 7.66 -51.93 -0.40 0.25 16 35 H 0.09 0.77 7.86 -51.93 -0.41 0.37 16 36 H 0.04 0.49 8.08 -51.93 -0.42 0.07 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.99 7.80 -51.93 -0.41 0.58 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.03 0.31 8.12 -51.93 -0.42 -0.12 16 41 H 0.35 5.31 7.31 -39.29 -0.29 5.03 16 42 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 45 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 46 H 0.07 0.66 8.04 -51.93 -0.42 0.25 16 47 H 0.08 0.95 7.82 -51.93 -0.41 0.55 16 48 H 0.12 1.19 7.33 -51.93 -0.38 0.81 16 49 H 0.09 0.56 8.05 -51.93 -0.42 0.14 16 50 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 51 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 52 H 0.10 0.49 7.59 -51.93 -0.39 0.09 16 LS Contribution 416.25 15.07 6.27 6.27 Total: -1.00 -32.43 416.25 -9.42 -41.85 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -9.06 Total: 11.56 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -1.27 Total: 2.61 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -0.52 Total: -54.89 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: 0.18 Total: -23.28 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.43 -9.42 -41.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699832354.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.606 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds