Wall clock time and date at job start Tue Mar 31 2020 19:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.30574 * 2 1 4 4 C 1.54384 * 110.34297 * 122.28598 * 2 1 3 5 5 N 1.48151 * 104.62251 * 142.73876 * 4 2 1 6 6 C 1.34770 * 127.84082 * 140.41912 * 5 4 2 7 7 O 1.21282 * 119.99884 * 179.97438 * 6 5 4 8 8 C 1.50693 * 120.00176 * 359.97438 * 6 5 4 9 9 C 1.54269 * 110.03244 * 297.90725 * 8 6 5 10 10 C 1.54962 * 104.16090 * 217.13807 * 9 8 6 11 11 C 1.54889 * 102.77888 * 37.88500 * 10 9 8 12 12 C 1.53871 * 110.03618 * 180.68985 * 8 6 5 13 13 C 1.48316 * 104.38755 * 320.47378 * 5 4 2 14 14 C 1.54285 * 110.34234 * 237.82259 * 2 1 3 15 15 H 1.09006 * 110.34545 * 122.15803 * 14 2 1 16 16 C 1.52997 * 110.34535 * 0.02562 * 14 2 1 17 17 N 1.46899 * 109.47254 * 176.47272 * 16 14 2 18 18 C 1.46904 * 111.00029 * 179.97438 * 17 16 14 19 19 C 1.50696 * 109.46800 * 180.02562 * 18 17 16 20 20 O 1.21289 * 120.00338 * 0.02562 * 19 18 17 21 21 N 1.34782 * 119.99855 * 180.02562 * 19 18 17 22 22 C 1.37091 * 120.00193 * 180.02562 * 21 19 18 23 23 H 1.07996 * 120.00199 * 359.97438 * 22 21 19 24 24 C 1.38954 * 119.99891 * 180.02562 * 22 21 19 25 25 N 1.31407 * 120.00269 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99666 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47232 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.46698 * 120.00223 * 26 24 22 29 29 H 1.48500 * 109.46974 * 239.99747 * 26 24 22 30 30 H 1.08995 * 109.46709 * 182.17531 * 1 2 3 31 31 H 1.08994 * 109.47297 * 302.17801 * 1 2 3 32 32 H 1.09001 * 109.46877 * 62.17635 * 1 2 3 33 33 H 1.08998 * 110.41290 * 261.52663 * 4 2 1 34 34 H 1.09006 * 110.41143 * 23.83538 * 4 2 1 35 35 H 1.08996 * 110.02125 * 59.29468 * 8 6 5 36 36 H 1.09010 * 110.48382 * 335.78588 * 9 8 6 37 37 H 1.09002 * 110.48731 * 98.42348 * 9 8 6 38 38 H 1.09003 * 110.72007 * 279.56861 * 10 9 8 39 39 H 1.09003 * 110.92463 * 156.29467 * 10 9 8 40 40 H 1.09001 * 110.48385 * 203.40614 * 11 10 9 41 41 H 1.09003 * 110.48407 * 80.76134 * 11 10 9 42 42 H 1.08996 * 110.03440 * 238.56695 * 12 8 6 43 43 H 1.09004 * 110.03349 * 359.97438 * 12 8 6 44 44 H 1.09004 * 110.38690 * 280.73458 * 13 5 4 45 45 H 1.08998 * 110.50512 * 158.24866 * 13 5 4 46 46 H 1.09002 * 109.47153 * 56.47269 * 16 14 2 47 47 H 1.09001 * 109.46832 * 296.47460 * 16 14 2 48 48 H 1.00902 * 111.00582 * 303.95797 * 17 16 14 49 49 H 1.08995 * 109.47167 * 300.00240 * 18 17 16 50 50 H 1.09003 * 109.46442 * 60.00214 * 18 17 16 51 51 H 0.97000 * 119.99567 * 0.02562 * 21 19 18 52 52 H 0.96998 * 120.00361 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0667 -0.7732 1.2237 5 7 3.2665 -1.4824 0.7213 6 6 4.4424 -1.6678 1.3531 7 8 5.3365 -2.2760 0.8040 8 6 4.6463 -1.1193 2.7418 9 6 4.5272 0.4187 2.7253 10 6 5.5951 0.8925 3.7434 11 6 6.7631 -0.0950 3.4994 12 6 6.0671 -1.4459 3.2342 13 6 2.8819 -1.9416 -0.6355 14 6 2.0664 -0.7704 -1.2244 15 1 2.7082 -0.1266 -1.8259 16 6 0.9062 -1.3010 -2.0690 17 7 1.4361 -1.9571 -3.2718 18 6 0.3481 -2.4807 -4.1085 19 6 0.9291 -3.1456 -5.3297 20 8 2.1312 -3.1804 -5.4873 21 7 0.1128 -3.7017 -6.2468 22 6 0.6413 -4.3071 -7.3575 23 1 1.7117 -4.3380 -7.4979 24 6 -0.2003 -4.8799 -8.3033 25 7 -1.5027 -4.8418 -8.1328 26 14 0.5199 -5.7041 -9.8171 27 1 2.0014 -5.6122 -9.7732 28 1 0.1125 -7.1319 -9.8442 29 1 0.0181 -5.0230 -11.0375 30 1 -0.3632 -1.0269 0.0390 31 1 -0.3633 0.5472 0.8698 32 1 -0.3633 0.4797 -0.9089 33 1 2.3400 -0.0815 2.0205 34 1 1.3227 -1.4861 1.5792 35 1 3.9085 -1.5436 3.4226 36 1 4.7487 0.8078 1.7314 37 1 3.5316 0.7276 3.0438 38 1 5.2213 0.8043 4.7635 39 1 5.9049 1.9165 3.5344 40 1 7.3984 -0.1601 4.3828 41 1 7.3461 0.2108 2.6307 42 1 6.0187 -2.0280 4.1544 43 1 6.6090 -2.0016 2.4689 44 1 2.2666 -2.8392 -0.5724 45 1 3.7688 -2.1294 -1.2407 46 1 0.2610 -0.4726 -2.3614 47 1 0.3317 -2.0207 -1.4858 48 1 2.0259 -1.3287 -3.7965 49 1 -0.2299 -3.2086 -3.5392 50 1 -0.3013 -1.6606 -4.4150 51 1 -0.8485 -3.6736 -6.1209 52 1 -2.0902 -5.2414 -8.7931 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699953880.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:46 Heat of formation + Delta-G solvation = -81.913141 kcal Electronic energy + Delta-G solvation = -29372.222543 eV Core-core repulsion = 25370.738405 eV Total energy + Delta-G solvation = -4001.484138 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.68530 -38.97442 -38.14668 -37.10446 -35.34161 -33.87500 -33.03764 -31.22684 -30.67343 -29.43184 -28.99784 -27.08492 -26.59215 -24.86936 -23.75197 -22.74174 -21.43270 -21.02751 -19.57172 -19.15316 -18.85301 -17.86188 -17.63260 -16.45266 -16.10737 -15.91395 -15.75772 -15.48769 -14.96964 -14.66746 -14.57220 -14.43366 -13.95987 -13.82714 -13.72761 -13.50234 -13.23132 -12.78055 -12.57229 -12.39281 -12.32379 -12.24953 -11.91720 -11.82827 -11.64064 -11.62195 -11.47747 -11.43732 -11.36293 -11.15424 -11.06548 -10.87569 -10.82708 -10.80487 -10.51139 -10.32963 -10.20943 -9.84100 -9.50621 -8.86937 -8.44163 -8.03535 -7.94268 -6.40628 -3.81170 2.50346 2.77736 3.17541 3.28056 3.35794 3.92237 3.99078 4.11078 4.18703 4.24249 4.28209 4.35439 4.48924 4.60976 4.83231 4.90266 4.98466 5.03865 5.10763 5.12972 5.15774 5.16914 5.22614 5.24532 5.28140 5.30453 5.33020 5.44905 5.45200 5.53841 5.56789 5.61662 5.66487 5.74307 5.78459 5.80274 5.89730 5.91381 5.95251 5.97880 5.99672 6.05456 6.12270 6.26275 6.28140 7.21448 7.43344 7.56873 7.65931 8.04570 8.08183 8.62840 9.19598 9.55886 10.07523 10.77238 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021910 B = 0.001900 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.644851 B =14735.902298 C =15688.442666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.100 4.100 3 H 0.080 0.920 4 C 0.099 3.901 5 N -0.625 5.625 6 C 0.537 3.463 7 O -0.536 6.536 8 C -0.109 4.109 9 C -0.115 4.115 10 C -0.124 4.124 11 C -0.124 4.124 12 C -0.120 4.120 13 C 0.120 3.880 14 C -0.095 4.095 15 H 0.080 0.920 16 C 0.067 3.933 17 N -0.671 5.671 18 C 0.052 3.948 19 C 0.440 3.560 20 O -0.582 6.582 21 N -0.565 5.565 22 C -0.298 4.298 23 H 0.104 0.896 24 C 0.021 3.979 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.282 1.282 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.090 0.910 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.035 0.965 47 H 0.075 0.925 48 H 0.349 0.651 49 H 0.085 0.915 50 H 0.043 0.957 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.585 14.038 26.148 29.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 H 0.099 0.901 4 C -0.024 4.024 5 N -0.359 5.359 6 C 0.326 3.674 7 O -0.413 6.413 8 C -0.130 4.130 9 C -0.152 4.152 10 C -0.162 4.162 11 C -0.162 4.162 12 C -0.158 4.158 13 C -0.001 4.001 14 C -0.115 4.115 15 H 0.099 0.901 16 C -0.063 4.063 17 N -0.304 5.304 18 C -0.081 4.081 19 C 0.226 3.774 20 O -0.466 6.466 21 N -0.202 5.202 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.208 1.208 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.095 0.905 45 H 0.105 0.895 46 H 0.053 0.947 47 H 0.093 0.907 48 H 0.168 0.832 49 H 0.103 0.897 50 H 0.061 0.939 51 H 0.225 0.775 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.959 12.965 25.982 29.458 hybrid contribution -0.965 0.366 -1.128 1.529 sum 3.994 13.331 24.854 28.485 Atomic orbital electron populations 1.21927 0.93917 1.02546 1.02160 1.22086 0.96410 0.99392 0.94129 0.90111 1.22640 0.87098 0.95706 0.97004 1.49055 1.12755 1.55992 1.18104 1.20211 0.80245 0.79313 0.87655 1.90704 1.41169 1.41858 1.67578 1.21913 1.00161 0.97179 0.93786 1.22436 0.99610 0.92728 1.00444 1.22521 0.95560 0.99110 0.98964 1.22367 0.97524 0.94750 1.01553 1.22178 0.93644 0.98058 1.01926 1.22351 0.99718 0.96343 0.81724 1.22107 0.97016 0.96699 0.95638 0.90137 1.22165 0.95181 0.96930 0.92026 1.60057 1.20200 1.41912 1.08198 1.21650 0.93109 0.98937 0.94361 1.19832 0.87572 0.84832 0.85176 1.90533 1.14763 1.63063 1.78199 1.41871 1.08772 1.49970 1.19560 1.19760 0.94425 1.31403 0.97171 0.87868 1.25260 0.95132 0.98003 0.99613 1.69616 1.02300 1.45732 1.36752 0.85802 0.79326 0.78607 0.80631 1.19205 1.20746 1.20797 0.91816 0.92592 0.91667 0.89983 0.90881 0.88630 0.91055 0.90813 0.91274 0.91305 0.91483 0.91463 0.91447 0.89107 0.90525 0.89453 0.94697 0.90656 0.83157 0.89670 0.93943 0.77495 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 7.94 37.16 0.29 -0.61 16 2 C -0.10 -0.72 3.66 -89.22 -0.33 -1.05 16 3 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 4 C 0.10 0.71 6.31 -2.41 -0.02 0.69 16 5 N -0.63 -6.73 3.32 -169.17 -0.56 -7.29 16 6 C 0.54 6.58 7.11 -10.99 -0.08 6.51 16 7 O -0.54 -8.94 15.48 5.56 0.09 -8.86 16 8 C -0.11 -0.92 2.79 -90.66 -0.25 -1.17 16 9 C -0.11 -0.75 5.20 -25.03 -0.13 -0.88 16 10 C -0.12 -0.72 6.91 -24.70 -0.17 -0.89 16 11 C -0.12 -0.88 6.83 -25.07 -0.17 -1.05 16 12 C -0.12 -1.04 6.40 -25.62 -0.16 -1.21 16 13 C 0.12 1.49 6.44 -2.31 -0.01 1.47 16 14 C -0.09 -0.95 3.24 -89.22 -0.29 -1.24 16 15 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 16 C 0.07 0.74 3.82 -3.83 -0.01 0.72 16 17 N -0.67 -10.49 5.96 -115.06 -0.69 -11.17 16 18 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 19 C 0.44 10.46 7.82 -10.99 -0.09 10.37 16 20 O -0.58 -16.02 15.78 5.55 0.09 -15.93 16 21 N -0.56 -14.41 5.29 -10.97 -0.06 -14.47 16 22 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 23 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.68 13.05 55.50 0.72 -23.95 16 26 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 29 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 30 H 0.06 0.41 6.85 -51.93 -0.36 0.05 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.42 6.71 -51.93 -0.35 0.08 16 33 H 0.08 0.44 4.97 -51.93 -0.26 0.18 16 34 H 0.07 0.48 7.83 -51.93 -0.41 0.07 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.56 7.85 -51.92 -0.41 0.16 16 37 H 0.07 0.35 6.54 -51.93 -0.34 0.01 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 1.04 6.39 -51.93 -0.33 0.70 16 44 H 0.08 0.99 7.78 -51.93 -0.40 0.59 16 45 H 0.09 1.33 7.89 -51.93 -0.41 0.92 16 46 H 0.04 0.35 6.58 -51.93 -0.34 0.01 16 47 H 0.08 0.80 6.89 -51.93 -0.36 0.44 16 48 H 0.35 5.73 8.43 -39.29 -0.33 5.40 16 49 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 50 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 52 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 403.19 15.07 6.08 6.08 Total: -1.00 -33.74 403.19 -9.82 -43.56 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -8.78 Total: 11.33 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -1.69 Total: 4.46 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.58 Total: -56.89 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: 0.17 Total: -24.79 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.74 -9.82 -43.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699953880.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.355 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds