Wall clock time and date at job start Tue Mar 31 2020 19:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.30574 * 2 1 4 4 C 1.54384 * 110.34297 * 122.28598 * 2 1 3 5 5 N 1.48151 * 104.62251 * 142.73876 * 4 2 1 6 6 C 1.34770 * 127.84082 * 140.41912 * 5 4 2 7 7 O 1.21282 * 119.99884 * 179.97438 * 6 5 4 8 8 C 1.50693 * 120.00176 * 359.97438 * 6 5 4 9 9 C 1.54269 * 110.03244 * 297.90725 * 8 6 5 10 10 C 1.54962 * 104.16090 * 217.13807 * 9 8 6 11 11 C 1.54889 * 102.77888 * 37.88500 * 10 9 8 12 12 C 1.53871 * 110.03618 * 180.68985 * 8 6 5 13 13 C 1.48316 * 104.38755 * 320.47378 * 5 4 2 14 14 C 1.54285 * 110.34234 * 237.82259 * 2 1 3 15 15 H 1.09006 * 110.34545 * 122.15803 * 14 2 1 16 16 C 1.52997 * 110.34535 * 0.02562 * 14 2 1 17 17 N 1.46899 * 109.47254 * 176.47272 * 16 14 2 18 18 C 1.46904 * 111.00029 * 179.97438 * 17 16 14 19 19 C 1.50696 * 109.46800 * 180.02562 * 18 17 16 20 20 O 1.21289 * 120.00338 * 0.02562 * 19 18 17 21 21 N 1.34782 * 119.99855 * 180.02562 * 19 18 17 22 22 C 1.37091 * 120.00193 * 180.02562 * 21 19 18 23 23 H 1.07996 * 120.00199 * 359.97438 * 22 21 19 24 24 C 1.38954 * 119.99891 * 180.02562 * 22 21 19 25 25 N 1.31407 * 120.00269 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99666 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47232 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.46698 * 120.00223 * 26 24 22 29 29 H 1.48500 * 109.46974 * 239.99747 * 26 24 22 30 30 H 1.08995 * 109.46709 * 182.17531 * 1 2 3 31 31 H 1.08994 * 109.47297 * 302.17801 * 1 2 3 32 32 H 1.09001 * 109.46877 * 62.17635 * 1 2 3 33 33 H 1.08998 * 110.41290 * 261.52663 * 4 2 1 34 34 H 1.09006 * 110.41143 * 23.83538 * 4 2 1 35 35 H 1.08996 * 110.02125 * 59.29468 * 8 6 5 36 36 H 1.09010 * 110.48382 * 335.78588 * 9 8 6 37 37 H 1.09002 * 110.48731 * 98.42348 * 9 8 6 38 38 H 1.09003 * 110.72007 * 279.56861 * 10 9 8 39 39 H 1.09003 * 110.92463 * 156.29467 * 10 9 8 40 40 H 1.09001 * 110.48385 * 203.40614 * 11 10 9 41 41 H 1.09003 * 110.48407 * 80.76134 * 11 10 9 42 42 H 1.08996 * 110.03440 * 238.56695 * 12 8 6 43 43 H 1.09004 * 110.03349 * 359.97438 * 12 8 6 44 44 H 1.09004 * 110.38690 * 280.73458 * 13 5 4 45 45 H 1.08998 * 110.50512 * 158.24866 * 13 5 4 46 46 H 1.09002 * 109.47153 * 56.47269 * 16 14 2 47 47 H 1.09001 * 109.46832 * 296.47460 * 16 14 2 48 48 H 1.00902 * 111.00582 * 303.95797 * 17 16 14 49 49 H 1.08995 * 109.47167 * 300.00240 * 18 17 16 50 50 H 1.09003 * 109.46442 * 60.00214 * 18 17 16 51 51 H 0.97000 * 119.99567 * 0.02562 * 21 19 18 52 52 H 0.96998 * 120.00361 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0667 -0.7732 1.2237 5 7 3.2665 -1.4824 0.7213 6 6 4.4424 -1.6678 1.3531 7 8 5.3365 -2.2760 0.8040 8 6 4.6463 -1.1193 2.7418 9 6 4.5272 0.4187 2.7253 10 6 5.5951 0.8925 3.7434 11 6 6.7631 -0.0950 3.4994 12 6 6.0671 -1.4459 3.2342 13 6 2.8819 -1.9416 -0.6355 14 6 2.0664 -0.7704 -1.2244 15 1 2.7082 -0.1266 -1.8259 16 6 0.9062 -1.3010 -2.0690 17 7 1.4361 -1.9571 -3.2718 18 6 0.3481 -2.4807 -4.1085 19 6 0.9291 -3.1456 -5.3297 20 8 2.1312 -3.1804 -5.4873 21 7 0.1128 -3.7017 -6.2468 22 6 0.6413 -4.3071 -7.3575 23 1 1.7117 -4.3380 -7.4979 24 6 -0.2003 -4.8799 -8.3033 25 7 -1.5027 -4.8418 -8.1328 26 14 0.5199 -5.7041 -9.8171 27 1 2.0014 -5.6122 -9.7732 28 1 0.1125 -7.1319 -9.8442 29 1 0.0181 -5.0230 -11.0375 30 1 -0.3632 -1.0269 0.0390 31 1 -0.3633 0.5472 0.8698 32 1 -0.3633 0.4797 -0.9089 33 1 2.3400 -0.0815 2.0205 34 1 1.3227 -1.4861 1.5792 35 1 3.9085 -1.5436 3.4226 36 1 4.7487 0.8078 1.7314 37 1 3.5316 0.7276 3.0438 38 1 5.2213 0.8043 4.7635 39 1 5.9049 1.9165 3.5344 40 1 7.3984 -0.1601 4.3828 41 1 7.3461 0.2108 2.6307 42 1 6.0187 -2.0280 4.1544 43 1 6.6090 -2.0016 2.4689 44 1 2.2666 -2.8392 -0.5724 45 1 3.7688 -2.1294 -1.2407 46 1 0.2610 -0.4726 -2.3614 47 1 0.3317 -2.0207 -1.4858 48 1 2.0259 -1.3287 -3.7965 49 1 -0.2299 -3.2086 -3.5392 50 1 -0.3013 -1.6606 -4.4150 51 1 -0.8485 -3.6736 -6.1209 52 1 -2.0902 -5.2414 -8.7931 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699953880.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:45 Heat of formation + Delta-G solvation = -105.895868 kcal Electronic energy + Delta-G solvation = -29373.262513 eV Core-core repulsion = 25370.738405 eV Total energy + Delta-G solvation = -4002.524107 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.52749 -40.21713 -39.59038 -37.88583 -36.61763 -35.82708 -33.95559 -33.26499 -31.51556 -30.24286 -29.59088 -28.34106 -27.40913 -26.38606 -24.93456 -23.71886 -22.09820 -21.59299 -21.17121 -20.17091 -19.93634 -19.65211 -18.43813 -17.82780 -17.05185 -16.96334 -16.81836 -16.55681 -16.26273 -16.02904 -15.89791 -15.34636 -15.29778 -15.10973 -14.67948 -14.33754 -14.23015 -14.13373 -13.61048 -13.43925 -13.33858 -13.13920 -13.04544 -12.97012 -12.78624 -12.73542 -12.63319 -12.42266 -12.23601 -12.13544 -12.04875 -11.94720 -11.73501 -11.64561 -11.53156 -11.47288 -11.42490 -11.23066 -10.79565 -10.35439 -10.02547 -9.78169 -9.25968 -8.48334 -5.96840 1.35036 1.40315 1.54563 1.58154 1.93781 2.04513 2.28088 2.91180 3.18962 3.36568 3.50639 3.58912 3.62539 3.71257 3.78831 3.91042 4.12822 4.20752 4.31656 4.40672 4.42903 4.45630 4.46936 4.53661 4.54619 4.57677 4.58143 4.64957 4.66229 4.71693 4.75917 4.80359 4.91340 4.93440 4.98331 5.08053 5.10385 5.15860 5.22753 5.23355 5.25579 5.38053 5.39817 5.42994 5.45991 5.56933 5.89610 6.12454 6.40445 6.57950 6.59400 7.11781 7.12233 7.55388 8.11512 8.69240 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021910 B = 0.001900 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.644851 B =14735.902298 C =15688.442666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.093 0.907 4 C 0.097 3.903 5 N -0.624 5.624 6 C 0.526 3.474 7 O -0.596 6.596 8 C -0.103 4.103 9 C -0.110 4.110 10 C -0.117 4.117 11 C -0.126 4.126 12 C -0.125 4.125 13 C 0.119 3.881 14 C -0.088 4.088 15 H 0.069 0.931 16 C 0.072 3.928 17 N -0.691 5.691 18 C 0.068 3.932 19 C 0.435 3.565 20 O -0.626 6.626 21 N -0.573 5.573 22 C -0.335 4.335 23 H 0.076 0.924 24 C -0.012 4.012 25 N -0.919 5.919 26 Si 0.992 3.008 27 H -0.276 1.276 28 H -0.270 1.270 29 H -0.269 1.269 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.121 0.879 36 H 0.053 0.947 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.049 0.951 42 H 0.082 0.918 43 H 0.053 0.947 44 H 0.069 0.931 45 H 0.043 0.957 46 H 0.057 0.943 47 H 0.086 0.914 48 H 0.341 0.659 49 H 0.105 0.895 50 H 0.070 0.930 51 H 0.397 0.603 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.189 15.832 28.454 32.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.112 0.888 4 C -0.025 4.025 5 N -0.356 5.356 6 C 0.317 3.683 7 O -0.478 6.478 8 C -0.124 4.124 9 C -0.148 4.148 10 C -0.154 4.154 11 C -0.163 4.163 12 C -0.163 4.163 13 C -0.004 4.004 14 C -0.108 4.108 15 H 0.087 0.913 16 C -0.057 4.057 17 N -0.324 5.324 18 C -0.064 4.064 19 C 0.223 3.777 20 O -0.513 6.513 21 N -0.211 5.211 22 C -0.464 4.464 23 H 0.094 0.906 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.816 3.184 27 H -0.201 1.201 28 H -0.195 1.195 29 H -0.194 1.194 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.127 0.873 34 H 0.105 0.895 35 H 0.139 0.861 36 H 0.072 0.928 37 H 0.122 0.878 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.068 0.932 42 H 0.101 0.899 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.062 0.938 46 H 0.075 0.925 47 H 0.104 0.896 48 H 0.159 0.841 49 H 0.123 0.877 50 H 0.088 0.912 51 H 0.231 0.769 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.489 14.791 28.323 32.050 hybrid contribution -0.188 -0.210 -1.827 1.849 sum 2.302 14.581 26.496 30.331 Atomic orbital electron populations 1.21919 0.92398 1.02832 1.03161 1.22075 0.97489 0.99359 0.92036 0.88850 1.22932 0.85670 0.96232 0.97644 1.49174 1.13546 1.55535 1.17381 1.21067 0.79790 0.78520 0.88972 1.90676 1.43231 1.44604 1.69245 1.21997 1.00470 0.98648 0.91247 1.22460 1.01574 0.90777 0.99989 1.22522 0.94314 0.98879 0.99719 1.22378 0.98248 0.94311 1.01406 1.22193 0.93858 0.98839 1.01362 1.22209 0.98082 0.97442 0.82659 1.22033 0.96329 0.95768 0.96679 0.91272 1.22259 0.95654 0.97614 0.90139 1.60063 1.20219 1.43035 1.09044 1.21503 0.93439 0.99714 0.91733 1.21011 0.86988 0.83517 0.86210 1.90502 1.16947 1.64412 1.79439 1.41930 1.09140 1.50415 1.19565 1.19682 0.93592 1.33859 0.99296 0.90622 1.26019 0.95499 0.97861 1.01823 1.69665 1.02948 1.45664 1.37682 0.84887 0.78031 0.78096 0.77404 1.20090 1.19544 1.19377 0.91967 0.90469 0.91760 0.87270 0.89470 0.86108 0.92795 0.87841 0.89281 0.90481 0.90121 0.93236 0.89908 0.92836 0.91308 0.93824 0.92464 0.89602 0.84060 0.87731 0.91210 0.76869 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 7.94 71.98 0.57 -0.62 16 2 C -0.09 -1.02 3.66 -9.89 -0.04 -1.06 16 3 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 4 C 0.10 1.10 6.31 86.53 0.55 1.64 16 5 N -0.62 -13.33 3.32 -807.51 -2.68 -16.01 16 6 C 0.53 13.33 7.11 87.66 0.62 13.95 16 7 O -0.60 -21.79 15.48 -3.04 -0.05 -21.84 16 8 C -0.10 -1.60 2.79 -10.82 -0.03 -1.63 16 9 C -0.11 -1.15 5.20 31.70 0.16 -0.99 16 10 C -0.12 -1.03 6.91 31.91 0.22 -0.80 16 11 C -0.13 -1.69 6.83 31.67 0.22 -1.47 16 12 C -0.12 -2.16 6.40 31.32 0.20 -1.96 16 13 C 0.12 3.08 6.44 86.50 0.56 3.63 16 14 C -0.09 -1.71 3.24 -9.89 -0.03 -1.75 16 15 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 16 C 0.07 1.47 3.82 86.30 0.33 1.80 16 17 N -0.69 -21.54 5.96 -517.93 -3.08 -24.63 16 18 C 0.07 2.30 6.17 85.55 0.53 2.83 16 19 C 0.44 21.10 7.82 87.65 0.69 21.79 16 20 O -0.63 -36.00 15.78 -3.06 -0.05 -36.05 16 21 N -0.57 -29.84 5.29 -306.99 -1.62 -31.46 16 22 C -0.33 -19.42 9.68 84.04 0.81 -18.61 16 23 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 24 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 25 N -0.92 -49.83 13.05 21.66 0.28 -49.55 16 26 Si 0.99 43.74 29.55 68.60 2.03 45.77 16 27 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 28 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 29 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 30 H 0.06 0.55 6.85 -2.39 -0.02 0.54 16 31 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.06 0.57 6.71 -2.39 -0.02 0.56 16 33 H 0.11 0.67 4.97 -2.39 -0.01 0.66 16 34 H 0.09 0.81 7.83 -2.38 -0.02 0.80 16 35 H 0.12 1.28 8.14 -2.39 -0.02 1.27 16 36 H 0.05 0.77 7.85 -2.38 -0.02 0.75 16 37 H 0.10 0.48 6.54 -2.39 -0.02 0.46 16 38 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 41 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 43 H 0.05 1.35 6.39 -2.39 -0.02 1.33 16 44 H 0.07 1.85 7.78 -2.39 -0.02 1.83 16 45 H 0.04 1.49 7.89 -2.39 -0.02 1.47 16 46 H 0.06 0.97 6.58 -2.39 -0.02 0.96 16 47 H 0.09 1.62 6.89 -2.39 -0.02 1.60 16 48 H 0.34 11.49 8.43 -89.69 -0.76 10.73 16 49 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 50 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 51 H 0.40 19.42 7.90 -92.71 -0.73 18.68 16 52 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -79.02 403.19 0.10 -78.92 By element: Atomic # 1 Polarization: 38.82 SS G_CDS: -0.55 Total: 38.27 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: 5.83 Total: 16.57 kcal Atomic # 7 Polarization: -114.54 SS G_CDS: -7.10 Total: -121.64 kcal Atomic # 8 Polarization: -57.79 SS G_CDS: -0.10 Total: -57.89 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -79.02 0.10 -78.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699953880.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.976 kcal (2) G-P(sol) polarization free energy of solvation -79.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds