Wall clock time and date at job start Tue Mar 31 2020 19:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.38729 * 2 1 4 4 C 1.54384 * 110.34283 * 122.23054 * 2 1 3 5 5 N 1.48143 * 104.62065 * 142.73967 * 4 2 1 6 6 C 1.34769 * 127.84170 * 140.39360 * 5 4 2 7 7 O 1.21288 * 120.00282 * 180.02562 * 6 5 4 8 8 C 1.50705 * 119.99985 * 0.02562 * 6 5 4 9 9 C 1.52998 * 109.47263 * 180.02562 * 8 6 5 10 10 C 1.52992 * 109.47222 * 180.02562 * 9 8 6 11 11 N 1.46501 * 109.47096 * 180.02562 * 10 9 8 12 12 C 1.34784 * 119.99765 * 180.02562 * 11 10 9 13 13 O 1.21277 * 119.99986 * 359.97438 * 12 11 10 14 14 C 1.50698 * 119.99623 * 179.97438 * 12 11 10 15 15 C 1.52998 * 117.49943 * 248.74692 * 14 12 11 16 16 C 1.53005 * 117.49630 * 180.08478 * 14 12 11 17 17 C 1.48151 * 104.32040 * 320.41512 * 5 4 2 18 18 C 1.54281 * 110.34372 * 237.76803 * 2 1 3 19 19 H 1.09005 * 110.34282 * 122.14983 * 18 2 1 20 20 C 1.53004 * 110.34432 * 359.97438 * 18 2 1 21 21 N 1.46499 * 109.47198 * 175.00023 * 20 18 2 22 22 C 1.36939 * 119.99933 * 180.27608 * 21 20 18 23 23 H 1.08001 * 119.99700 * 359.72658 * 22 21 20 24 24 C 1.38810 * 120.00095 * 179.71972 * 22 21 20 25 25 N 1.31612 * 120.00054 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 119.99751 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47517 * 89.99708 * 26 24 22 28 28 H 1.48502 * 109.46736 * 209.99481 * 26 24 22 29 29 H 1.48496 * 109.47375 * 329.99177 * 26 24 22 30 30 H 1.09002 * 109.46810 * 182.22987 * 1 2 3 31 31 H 1.09001 * 109.46892 * 302.23152 * 1 2 3 32 32 H 1.09001 * 109.47136 * 62.23259 * 1 2 3 33 33 H 1.09008 * 110.40676 * 261.52406 * 4 2 1 34 34 H 1.09001 * 110.40797 * 23.95001 * 4 2 1 35 35 H 1.08998 * 109.47260 * 300.00375 * 8 6 5 36 36 H 1.08998 * 109.47196 * 60.00402 * 8 6 5 37 37 H 1.08998 * 109.47207 * 300.00308 * 9 8 6 38 38 H 1.09006 * 109.47108 * 59.99978 * 9 8 6 39 39 H 1.08997 * 109.47140 * 299.99621 * 10 9 8 40 40 H 1.08998 * 109.47363 * 60.00225 * 10 9 8 41 41 H 0.96997 * 120.00046 * 359.97438 * 11 10 9 42 42 H 1.09003 * 115.54931 * 34.41907 * 14 12 11 43 43 H 1.09001 * 117.50040 * 0.02562 * 15 14 12 44 44 H 1.09003 * 117.49826 * 145.02552 * 15 14 12 45 45 H 1.09001 * 117.49905 * 214.98062 * 16 14 12 46 46 H 1.08991 * 117.49781 * 359.97438 * 16 14 12 47 47 H 1.08998 * 110.40618 * 280.80042 * 17 5 4 48 48 H 1.08998 * 110.40357 * 158.37108 * 17 5 4 49 49 H 1.09009 * 109.46730 * 54.99810 * 20 18 2 50 50 H 1.08998 * 109.46846 * 295.00355 * 20 18 2 51 51 H 0.97001 * 119.99790 * 359.97438 * 21 20 18 52 52 H 0.96998 * 120.00381 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0218 0.0000 4 6 2.0667 -0.7720 1.2245 5 7 3.2665 -1.4816 0.7227 6 6 4.4425 -1.6660 1.3545 7 8 5.3370 -2.2740 0.8056 8 6 4.6463 -1.1166 2.7429 9 6 6.0564 -1.4616 3.2261 10 6 6.2630 -0.9045 4.6359 11 7 7.6135 -1.2343 5.0982 12 6 8.0213 -0.8427 6.3218 13 8 7.2704 -0.2169 7.0397 14 6 9.4102 -1.1824 6.7976 15 6 9.5386 -2.1950 7.9373 16 6 9.8126 -0.7115 8.1966 17 6 2.8802 -1.9422 -0.6314 18 6 2.0664 -0.7715 -1.2237 19 1 2.7081 -0.1282 -1.8258 20 6 0.9062 -1.3041 -2.0671 21 7 1.4329 -1.9285 -3.2832 22 6 0.5742 -2.4744 -4.1996 23 1 -0.4911 -2.4486 -4.0236 24 6 1.0729 -3.0610 -5.3546 25 7 0.2476 -3.5861 -6.2351 26 14 2.9154 -3.1061 -5.6585 27 1 3.4824 -4.3505 -5.0793 28 1 3.1768 -3.0767 -7.1201 29 1 3.5519 -1.9273 -5.0180 30 1 -0.3633 -1.0269 0.0400 31 1 -0.3633 0.5481 0.8693 32 1 -0.3633 0.4788 -0.9093 33 1 2.3401 -0.0794 2.0206 34 1 1.3235 -1.4860 1.5793 35 1 4.5228 -0.0338 2.7270 36 1 3.9127 -1.5561 3.4188 37 1 6.1803 -2.5444 3.2419 38 1 6.7898 -1.0219 2.5501 39 1 6.1391 0.1783 4.6204 40 1 5.5297 -1.3446 5.3116 41 1 8.2139 -1.7351 4.5242 42 1 10.1820 -1.1905 6.0278 43 1 8.6184 -2.6158 8.3427 44 1 10.3950 -2.8690 7.9177 45 1 10.8492 -0.4101 8.3474 46 1 9.0730 -0.1555 8.7726 47 1 2.2640 -2.8389 -0.5664 48 1 3.7673 -2.1324 -1.2354 49 1 0.2461 -0.4801 -2.3383 50 1 0.3480 -2.0427 -1.4918 51 1 2.3897 -1.9514 -3.4413 52 1 0.5960 -3.9963 -7.0421 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699961576.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:40 Heat of formation + Delta-G solvation = -40.917577 kcal Electronic energy + Delta-G solvation = -28474.365939 eV Core-core repulsion = 24474.659502 eV Total energy + Delta-G solvation = -3999.706437 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.42194 -40.19680 -38.34728 -36.90978 -35.75785 -34.85560 -33.18355 -32.85938 -31.38432 -29.64021 -28.01077 -26.52871 -25.44580 -24.35236 -23.15655 -22.91939 -22.05032 -21.81122 -20.48094 -19.29097 -19.13739 -17.90479 -17.52911 -17.15489 -16.54620 -16.41449 -15.87371 -15.56117 -15.42412 -15.18708 -14.63840 -14.58633 -14.40799 -13.94969 -13.72320 -13.38164 -13.08025 -13.01034 -12.67236 -12.56441 -12.52758 -12.33175 -12.11066 -12.05836 -12.02893 -11.86604 -11.77777 -11.32321 -11.26502 -11.13621 -11.02351 -10.94398 -10.60892 -10.48861 -10.31215 -10.29536 -10.04452 -9.89580 -9.59783 -9.51423 -8.89784 -8.78024 -7.24154 -5.77895 -3.13585 2.06813 2.53279 2.58947 2.93212 3.36115 3.38299 3.41925 3.46367 4.15310 4.19745 4.29019 4.37199 4.48964 4.55025 4.57664 4.58974 4.59693 4.66984 4.76909 4.94155 5.07021 5.09301 5.13243 5.20750 5.21413 5.30485 5.32637 5.38247 5.43019 5.48264 5.53350 5.62235 5.62276 5.66608 5.69133 5.73688 5.79705 5.92156 5.99182 6.00017 6.04379 6.16702 6.23208 6.36985 6.63402 6.71281 7.05089 7.50015 7.79611 7.97636 8.06318 8.40998 9.19915 9.92618 10.11724 11.40403 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020055 B = 0.001740 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.806405 B =16088.896994 C =17246.412128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 H 0.079 0.921 4 C 0.103 3.897 5 N -0.624 5.624 6 C 0.531 3.469 7 O -0.543 6.543 8 C -0.132 4.132 9 C -0.117 4.117 10 C 0.119 3.881 11 N -0.726 5.726 12 C 0.542 3.458 13 O -0.542 6.542 14 C -0.198 4.198 15 C -0.152 4.152 16 C -0.148 4.148 17 C 0.111 3.889 18 C -0.110 4.110 19 H 0.080 0.920 20 C 0.166 3.834 21 N -0.758 5.758 22 C -0.245 4.245 23 H 0.090 0.910 24 C 0.006 3.994 25 N -0.934 5.934 26 Si 0.882 3.118 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.278 1.278 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.404 0.596 42 H 0.124 0.876 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.108 0.892 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.035 0.965 50 H 0.032 0.968 51 H 0.360 0.640 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.362 7.515 28.393 32.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.097 0.903 4 C -0.020 4.020 5 N -0.358 5.358 6 C 0.320 3.680 7 O -0.421 6.421 8 C -0.172 4.172 9 C -0.155 4.155 10 C -0.005 4.005 11 N -0.377 5.377 12 C 0.328 3.672 13 O -0.419 6.419 14 C -0.219 4.219 15 C -0.190 4.190 16 C -0.185 4.185 17 C -0.011 4.011 18 C -0.130 4.130 19 H 0.098 0.902 20 C 0.039 3.961 21 N -0.404 5.404 22 C -0.375 4.375 23 H 0.108 0.892 24 C -0.190 4.190 25 N -0.581 5.581 26 Si 0.712 3.288 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.238 0.762 42 H 0.142 0.858 43 H 0.118 0.882 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.126 0.874 47 H 0.098 0.902 48 H 0.098 0.902 49 H 0.053 0.947 50 H 0.049 0.951 51 H 0.193 0.807 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.171 7.544 28.553 32.757 hybrid contribution 1.508 -0.307 -0.882 1.774 sum 15.679 7.236 27.671 32.617 Atomic orbital electron populations 1.21917 0.93662 1.02815 1.02113 1.22045 0.96741 0.99135 0.93783 0.90274 1.22570 0.86905 0.95554 0.96944 1.49077 1.12877 1.55645 1.18204 1.20188 0.80457 0.79818 0.87520 1.90727 1.41278 1.42166 1.67911 1.21507 0.98732 1.02937 0.94050 1.21526 0.96476 1.02723 0.94765 1.21386 0.83446 1.00712 0.94953 1.45920 1.16369 1.58060 1.17381 1.19685 0.87868 0.78509 0.81098 1.90703 1.55905 1.40055 1.55248 1.22213 0.96165 1.09038 0.94457 1.22964 1.04008 0.92801 0.99222 1.22973 1.02988 0.97076 0.95470 1.22473 0.99407 0.97254 0.81918 1.22395 0.98196 0.96383 0.96015 0.90195 1.20845 0.92898 0.95453 0.86908 1.42785 1.05202 1.70833 1.21534 1.19036 0.91191 1.29468 0.97781 0.89184 1.24659 0.97003 1.00456 0.96872 1.69695 1.33106 1.43804 1.11538 0.86584 0.86998 0.77922 0.77248 1.20975 1.21701 1.20375 0.91622 0.92949 0.91225 0.90468 0.90566 0.88601 0.88577 0.90274 0.90294 0.91243 0.91256 0.76164 0.85757 0.88207 0.87659 0.87831 0.87368 0.90227 0.90181 0.94684 0.95053 0.80736 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 7.94 37.16 0.29 -1.16 16 2 C -0.10 -1.01 3.66 -89.22 -0.33 -1.34 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 4 C 0.10 0.95 6.46 -2.41 -0.02 0.93 16 5 N -0.62 -7.71 3.32 -169.31 -0.56 -8.27 16 6 C 0.53 6.69 7.91 -10.99 -0.09 6.60 16 7 O -0.54 -9.07 16.25 5.55 0.09 -8.98 16 8 C -0.13 -1.03 4.68 -27.88 -0.13 -1.16 16 9 C -0.12 -0.87 4.62 -26.74 -0.12 -1.00 16 10 C 0.12 0.85 5.67 -4.04 -0.02 0.83 16 11 N -0.73 -5.07 5.56 -60.30 -0.34 -5.41 16 12 C 0.54 4.82 7.61 -10.98 -0.08 4.73 16 13 O -0.54 -6.91 16.26 5.56 0.09 -6.82 16 14 C -0.20 -1.19 6.19 -91.77 -0.57 -1.75 16 15 C -0.15 -0.77 10.24 -26.69 -0.27 -1.04 16 16 C -0.15 -0.84 10.05 -26.69 -0.27 -1.11 16 17 C 0.11 1.67 6.41 -2.41 -0.02 1.66 16 18 C -0.11 -1.57 3.10 -89.22 -0.28 -1.85 16 19 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 20 C 0.17 2.97 4.40 -4.04 -0.02 2.95 16 21 N -0.76 -17.61 5.28 -59.90 -0.32 -17.93 16 22 C -0.24 -6.86 10.47 -15.06 -0.16 -7.02 16 23 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 24 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 25 N -0.93 -29.30 13.97 55.49 0.78 -28.53 16 26 Si 0.88 22.38 27.74 -169.99 -4.71 17.66 16 27 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 29 H -0.28 -6.66 6.52 56.52 0.37 -6.30 16 30 H 0.06 0.69 6.90 -51.93 -0.36 0.33 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.76 6.67 -51.93 -0.35 0.41 16 33 H 0.08 0.51 7.30 -51.92 -0.38 0.13 16 34 H 0.08 0.65 7.83 -51.93 -0.41 0.25 16 35 H 0.10 0.59 7.95 -51.93 -0.41 0.18 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 38 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.40 1.94 8.47 -40.82 -0.35 1.59 16 42 H 0.12 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.11 0.79 7.67 -51.93 -0.40 0.39 16 47 H 0.08 1.25 7.75 -51.93 -0.40 0.85 16 48 H 0.08 1.37 7.88 -51.93 -0.41 0.96 16 49 H 0.04 0.63 6.49 -51.92 -0.34 0.29 16 50 H 0.03 0.56 6.93 -51.93 -0.36 0.20 16 51 H 0.36 8.33 5.47 -40.82 -0.22 8.10 16 52 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 415.31 15.07 6.26 6.26 Total: -1.00 -36.42 415.31 -9.92 -46.34 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -9.04 Total: 5.32 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -2.17 Total: 0.35 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.44 Total: -60.13 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: 0.18 Total: -15.80 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.71 Total: 17.66 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -36.42 -9.92 -46.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699961576.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.420 kcal (2) G-P(sol) polarization free energy of solvation -36.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds