Wall clock time and date at job start Tue Mar 31 2020 19:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.30000 * 2 1 4 4 C 1.54385 * 110.43155 * 237.76956 * 2 1 3 5 5 N 1.48144 * 104.61907 * 264.94967 * 4 2 1 6 6 C 1.34775 * 127.83969 * 140.41308 * 5 4 2 7 7 O 1.21282 * 119.99469 * 179.97438 * 6 5 4 8 8 C 1.50692 * 120.00116 * 0.02562 * 6 5 4 9 9 C 1.53001 * 109.47132 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47005 * 179.97438 * 9 8 6 11 11 N 1.46499 * 109.47044 * 179.97438 * 10 9 8 12 12 C 1.34782 * 120.00382 * 179.97438 * 11 10 9 13 13 O 1.21285 * 119.99413 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00441 * 180.02562 * 12 11 10 15 15 C 1.52999 * 117.49805 * 248.74999 * 14 12 11 16 16 C 1.52993 * 117.49707 * 180.09042 * 14 12 11 17 17 C 1.48151 * 104.32233 * 320.41113 * 5 4 2 18 18 C 1.54277 * 110.34572 * 122.17664 * 2 1 3 19 19 H 1.09000 * 110.34806 * 237.84708 * 18 2 1 20 20 C 1.53001 * 110.43227 * 0.06251 * 18 2 1 21 21 N 1.46501 * 109.47196 * 182.04397 * 20 18 2 22 22 C 1.36931 * 119.99991 * 180.02562 * 21 20 18 23 23 H 1.08005 * 120.00011 * 359.97438 * 22 21 20 24 24 C 1.38817 * 120.00250 * 179.97438 * 22 21 20 25 25 N 1.31621 * 119.99529 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00154 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.46956 * 90.00211 * 26 24 22 28 28 H 1.48504 * 109.47131 * 210.00000 * 26 24 22 29 29 H 1.48492 * 109.47540 * 330.00303 * 26 24 22 30 30 H 1.09002 * 109.46989 * 297.82308 * 1 2 3 31 31 H 1.09002 * 109.47468 * 57.81891 * 1 2 3 32 32 H 1.08999 * 109.47260 * 177.82206 * 1 2 3 33 33 H 1.09004 * 110.40869 * 23.73296 * 4 2 1 34 34 H 1.09003 * 110.41159 * 146.04318 * 4 2 1 35 35 H 1.09005 * 109.47336 * 299.99781 * 8 6 5 36 36 H 1.09005 * 109.47508 * 59.99878 * 8 6 5 37 37 H 1.09000 * 109.46970 * 299.99618 * 9 8 6 38 38 H 1.08993 * 109.47176 * 59.99958 * 9 8 6 39 39 H 1.09000 * 109.47056 * 299.99702 * 10 9 8 40 40 H 1.09003 * 109.46952 * 59.99940 * 10 9 8 41 41 H 0.97001 * 120.00223 * 0.02562 * 11 10 9 42 42 H 1.08995 * 115.54787 * 34.41652 * 14 12 11 43 43 H 1.09004 * 117.49585 * 0.02562 * 15 14 12 44 44 H 1.08997 * 117.49739 * 145.02078 * 15 14 12 45 45 H 1.09004 * 117.49338 * 214.98071 * 16 14 12 46 46 H 1.09001 * 117.50050 * 359.97265 * 16 14 12 47 47 H 1.08992 * 110.40889 * 280.80306 * 17 5 4 48 48 H 1.09000 * 110.40506 * 158.36626 * 17 5 4 49 49 H 1.09006 * 109.47112 * 302.04286 * 20 18 2 50 50 H 1.08991 * 109.47274 * 62.04000 * 20 18 2 51 51 H 0.97000 * 119.99697 * 359.97438 * 21 20 18 52 52 H 0.97004 * 119.99262 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7716 -1.2238 5 7 2.3177 -2.1428 -0.7214 6 6 2.0834 -3.3100 -1.3532 7 8 2.3437 -4.3596 -0.8040 8 6 1.4993 -3.3109 -2.7423 9 6 1.3343 -4.7533 -3.2252 10 6 0.7405 -4.7542 -4.6354 11 7 0.5831 -6.1352 -5.0981 12 6 0.0742 -6.3823 -6.3214 13 8 -0.2531 -5.4612 -7.0393 14 6 -0.0883 -7.8030 -6.7972 15 6 0.8169 -8.2741 -7.9371 16 6 -0.6698 -8.0174 -8.1960 17 6 2.8825 -1.9400 0.6331 18 6 2.0664 -0.7703 1.2243 19 1 2.7081 -0.1265 1.8259 20 6 0.9078 -1.3038 2.0693 21 7 1.4395 -1.9886 3.2503 22 6 0.5833 -2.5516 4.1586 23 1 -0.4839 -2.4906 4.0046 24 6 1.0871 -3.2010 5.2773 25 7 2.3877 -3.2749 5.4652 26 14 -0.0809 -3.9685 6.5167 27 1 -0.3568 -5.3758 6.1313 28 1 0.5387 -3.9371 7.8660 29 1 -1.3530 -3.2027 6.5383 30 1 -0.3633 0.4797 0.9089 31 1 -0.3634 0.5473 -0.8698 32 1 -0.3634 -1.0269 -0.0391 33 1 1.3253 -0.7878 -2.0206 34 1 2.9957 -0.3211 -1.5793 35 1 0.5263 -2.8195 -2.7276 36 1 2.1666 -2.7753 -3.4175 37 1 2.3069 -5.2450 -3.2399 38 1 0.6667 -5.2884 -2.5500 39 1 -0.2322 -4.2626 -4.6203 40 1 1.4079 -4.2189 -5.3109 41 1 0.8445 -6.8719 -4.5237 42 1 -0.3478 -8.5297 -6.0274 43 1 1.5302 -7.5566 -8.3427 44 1 1.1525 -9.3109 -7.9175 45 1 -1.3116 -8.8855 -8.3465 46 1 -0.9352 -7.1309 -8.7720 47 1 3.9374 -1.6733 0.5690 48 1 2.7526 -2.8378 1.2374 49 1 0.2756 -0.4736 2.3846 50 1 0.3189 -2.0044 1.4775 51 1 2.3980 -2.0437 3.3883 52 1 2.7397 -3.7284 6.2472 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699961578.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:52 Heat of formation + Delta-G solvation = -43.211081 kcal Electronic energy + Delta-G solvation = -28918.802196 eV Core-core repulsion = 24918.996304 eV Total energy + Delta-G solvation = -3999.805891 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.30727 -40.07305 -38.13539 -36.80754 -35.63604 -34.55935 -33.00302 -32.64825 -31.15004 -29.31333 -27.76973 -26.59303 -25.17840 -24.27112 -23.08485 -22.84703 -22.08601 -21.70914 -20.36846 -19.07845 -18.93333 -17.80104 -17.30957 -16.83142 -16.54624 -16.21924 -15.97482 -15.46647 -15.17543 -14.86748 -14.65081 -14.34891 -13.90343 -13.68264 -13.64027 -13.46806 -12.93899 -12.84061 -12.78813 -12.53010 -12.40507 -12.20217 -11.98897 -11.94093 -11.79138 -11.65967 -11.44730 -11.17183 -11.05714 -10.96744 -10.93946 -10.83643 -10.60943 -10.40301 -10.20895 -10.18277 -9.90255 -9.70309 -9.62870 -9.40486 -8.82527 -8.55211 -6.87707 -5.73010 -3.01191 2.16056 2.71516 2.76255 3.11460 3.44214 3.46189 3.50930 3.52437 4.26624 4.33982 4.37773 4.45135 4.55744 4.63721 4.69210 4.71310 4.73627 4.81786 4.92707 5.08518 5.16201 5.20774 5.28150 5.30700 5.39033 5.41189 5.43736 5.49877 5.50617 5.57570 5.61834 5.69530 5.77306 5.81643 5.86422 5.92921 6.03677 6.07243 6.11045 6.11914 6.23981 6.34118 6.46857 6.55224 6.77657 6.92021 7.15854 7.71115 7.72926 7.89458 8.30085 8.45891 9.56882 10.14614 10.48835 11.49936 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012158 B = 0.002045 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.394910 B =13691.425547 C =15110.434613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.083 0.917 4 C 0.103 3.897 5 N -0.619 5.619 6 C 0.531 3.469 7 O -0.535 6.535 8 C -0.131 4.131 9 C -0.117 4.117 10 C 0.119 3.881 11 N -0.725 5.725 12 C 0.542 3.458 13 O -0.543 6.543 14 C -0.197 4.197 15 C -0.153 4.153 16 C -0.148 4.148 17 C 0.108 3.892 18 C -0.106 4.106 19 H 0.085 0.915 20 C 0.163 3.837 21 N -0.732 5.732 22 C -0.237 4.237 23 H 0.069 0.931 24 C -0.014 4.014 25 N -0.933 5.933 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.404 0.596 42 H 0.125 0.875 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.108 0.892 47 H 0.064 0.936 48 H 0.099 0.901 49 H 0.023 0.977 50 H 0.020 0.980 51 H 0.383 0.617 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.293 -0.999 -26.315 26.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 H 0.102 0.898 4 C -0.020 4.020 5 N -0.354 5.354 6 C 0.319 3.681 7 O -0.412 6.412 8 C -0.171 4.171 9 C -0.156 4.156 10 C -0.004 4.004 11 N -0.376 5.376 12 C 0.328 3.672 13 O -0.421 6.421 14 C -0.218 4.218 15 C -0.190 4.190 16 C -0.185 4.185 17 C -0.014 4.014 18 C -0.126 4.126 19 H 0.104 0.896 20 C 0.036 3.964 21 N -0.377 5.377 22 C -0.369 4.369 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.581 5.581 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.239 0.761 42 H 0.143 0.857 43 H 0.118 0.882 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.126 0.874 47 H 0.083 0.917 48 H 0.117 0.883 49 H 0.041 0.959 50 H 0.038 0.962 51 H 0.216 0.784 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.559 -1.042 -26.490 26.556 hybrid contribution -0.129 -0.693 1.273 1.455 sum -1.688 -1.735 -25.216 25.332 Atomic orbital electron populations 1.21910 0.94360 1.02395 1.01692 1.22080 0.96726 0.98974 0.94109 0.89846 1.22494 1.00310 0.82204 0.96990 1.48967 1.63232 1.05220 1.17938 1.20127 0.78296 0.82233 0.87434 1.90756 1.52360 1.30383 1.67676 1.21496 1.02881 0.98622 0.94151 1.21532 1.02918 0.96404 0.94701 1.21392 1.01380 0.82684 0.94990 1.45929 1.65058 1.09336 1.17325 1.19679 0.76473 0.89882 0.81135 1.90699 1.49933 1.46115 1.55311 1.22215 1.09561 0.95610 0.94444 1.22957 0.94156 1.02608 0.99306 1.22968 0.96016 1.03997 0.95552 1.22474 0.95958 1.00476 0.82511 1.22354 0.98468 0.96077 0.95688 0.89620 1.20780 0.93105 0.94491 0.88072 1.42396 1.06430 1.66071 1.22774 1.19188 0.89726 1.27656 1.00285 0.91345 1.24733 0.95835 1.01570 0.98876 1.69658 1.10295 1.48423 1.29763 0.86198 0.79828 0.79301 0.80917 1.21746 1.21789 1.20829 0.91574 0.93225 0.92093 0.90455 0.91159 0.88671 0.88837 0.90317 0.90141 0.91234 0.91361 0.76116 0.85716 0.88240 0.87682 0.87849 0.87387 0.91741 0.88294 0.95941 0.96199 0.78374 0.93561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 7.93 37.16 0.29 -1.36 16 2 C -0.10 -1.11 3.65 -89.23 -0.33 -1.43 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.10 1.02 6.47 -2.41 -0.02 1.01 16 5 N -0.62 -8.54 3.32 -169.31 -0.56 -9.10 16 6 C 0.53 7.74 7.91 -10.99 -0.09 7.65 16 7 O -0.54 -10.33 16.25 5.56 0.09 -10.24 16 8 C -0.13 -1.24 4.68 -27.89 -0.13 -1.37 16 9 C -0.12 -1.08 4.62 -26.73 -0.12 -1.20 16 10 C 0.12 1.01 5.67 -4.04 -0.02 0.99 16 11 N -0.73 -6.00 5.56 -60.29 -0.33 -6.33 16 12 C 0.54 5.39 7.61 -10.98 -0.08 5.31 16 13 O -0.54 -7.44 16.26 5.55 0.09 -7.35 16 14 C -0.20 -1.38 6.19 -91.78 -0.57 -1.95 16 15 C -0.15 -0.89 10.24 -26.70 -0.27 -1.17 16 16 C -0.15 -0.97 10.05 -26.70 -0.27 -1.24 16 17 C 0.11 1.75 6.40 -2.40 -0.02 1.73 16 18 C -0.11 -1.63 3.13 -89.22 -0.28 -1.90 16 19 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 20 C 0.16 3.24 4.43 -4.04 -0.02 3.22 16 21 N -0.73 -18.68 5.12 -59.91 -0.31 -18.99 16 22 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 23 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 24 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 25 N -0.93 -28.66 13.06 55.49 0.72 -27.94 16 26 Si 0.91 22.92 29.55 -169.99 -5.02 17.90 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 29 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 30 H 0.07 0.81 6.75 -51.93 -0.35 0.46 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.79 6.86 -51.93 -0.36 0.44 16 33 H 0.08 0.61 7.03 -51.93 -0.36 0.24 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.77 7.95 -51.93 -0.41 0.36 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 38 H 0.08 0.85 8.10 -51.93 -0.42 0.42 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.40 2.51 8.47 -40.82 -0.35 2.16 16 42 H 0.12 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.11 0.87 7.67 -51.93 -0.40 0.47 16 47 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.10 2.06 7.08 -51.93 -0.37 1.70 16 49 H 0.02 0.45 6.68 -51.93 -0.35 0.10 16 50 H 0.02 0.43 6.93 -51.93 -0.36 0.07 16 51 H 0.38 10.22 7.39 -40.82 -0.30 9.92 16 52 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 417.76 15.07 6.30 6.30 Total: -1.00 -36.65 417.76 -10.25 -46.90 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -9.07 Total: 8.01 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -2.16 Total: 0.84 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: -0.48 Total: -62.37 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: 0.18 Total: -17.59 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -36.65 -10.25 -46.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699961578.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.693 kcal (2) G-P(sol) polarization free energy of solvation -36.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds