Wall clock time and date at job start Tue Mar 31 2020 20:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 110.79807 * 2 1 4 4 C 1.55211 * 110.81161 * 123.39576 * 2 1 3 5 5 N 1.48124 * 103.26072 * 155.70330 * 4 2 1 6 6 C 1.34779 * 127.03087 * 140.64727 * 5 4 2 7 7 O 1.21284 * 119.99729 * 180.02562 * 6 5 4 8 8 C 1.50697 * 120.00242 * 0.04543 * 6 5 4 9 9 C 1.52997 * 109.47480 * 180.02562 * 8 6 5 10 10 C 1.54267 * 110.03163 * 292.90717 * 9 8 6 11 11 C 1.54957 * 104.16291 * 217.13461 * 10 9 8 12 12 C 1.54892 * 102.77743 * 37.88376 * 11 10 9 13 13 C 1.53870 * 110.03571 * 175.68589 * 9 8 6 14 14 C 1.47484 * 105.93212 * 320.68491 * 5 4 2 15 15 C 1.54000 * 107.08662 * 25.44537 * 14 5 4 16 16 H 1.09002 * 110.32853 * 239.80250 * 15 14 5 17 17 N 1.46895 * 110.32456 * 117.69085 * 15 14 5 18 18 C 1.46897 * 111.00467 * 87.83665 * 17 15 14 19 19 C 1.50695 * 109.47393 * 179.97438 * 18 17 15 20 20 O 1.21291 * 120.00079 * 359.97438 * 19 18 17 21 21 N 1.34781 * 119.99946 * 180.02562 * 19 18 17 22 22 C 1.37100 * 120.00149 * 180.02562 * 21 19 18 23 23 H 1.07998 * 119.99932 * 359.97438 * 22 21 19 24 24 C 1.38940 * 120.00135 * 179.97438 * 22 21 19 25 25 N 1.31414 * 120.00147 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00136 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47332 * 89.99929 * 26 24 22 28 28 H 1.48501 * 109.46951 * 210.00404 * 26 24 22 29 29 H 1.48496 * 109.46894 * 329.99576 * 26 24 22 30 30 H 1.08999 * 109.46807 * 183.28974 * 1 2 3 31 31 H 1.08997 * 109.47380 * 303.29097 * 1 2 3 32 32 H 1.09003 * 109.46814 * 63.29233 * 1 2 3 33 33 H 1.08998 * 110.67933 * 37.25222 * 4 2 1 34 34 H 1.08991 * 110.77892 * 274.20218 * 4 2 1 35 35 H 1.09004 * 109.46696 * 299.99742 * 8 6 5 36 36 H 1.08993 * 109.47369 * 59.99534 * 8 6 5 37 37 H 1.09009 * 110.01593 * 54.29137 * 9 8 6 38 38 H 1.09007 * 110.48359 * 335.78370 * 10 9 8 39 39 H 1.09005 * 110.48855 * 98.42082 * 10 9 8 40 40 H 1.09004 * 110.72368 * 279.57411 * 11 10 9 41 41 H 1.08994 * 110.76955 * 156.21895 * 11 10 9 42 42 H 1.08997 * 110.49053 * 203.40490 * 12 11 10 43 43 H 1.09007 * 110.48617 * 80.76368 * 12 11 10 44 44 H 1.08993 * 110.03577 * 238.56661 * 13 9 8 45 45 H 1.09002 * 110.03065 * 359.95131 * 13 9 8 46 46 H 1.09008 * 109.90926 * 266.08190 * 14 5 4 47 47 H 1.09001 * 109.91041 * 144.81251 * 14 5 4 48 48 H 1.00904 * 111.00063 * 211.79131 * 17 15 14 49 49 H 1.09003 * 109.47002 * 300.00405 * 18 17 15 50 50 H 1.09000 * 109.46905 * 59.99385 * 18 17 15 51 51 H 0.97000 * 120.00039 * 359.97438 * 21 19 18 52 52 H 0.96998 * 119.99936 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 6 2.0815 -0.7986 1.2113 5 7 3.4306 -1.2117 0.7601 6 6 4.5573 -1.2491 1.4987 7 8 5.6002 -1.6105 0.9959 8 6 4.5214 -0.8424 2.9493 9 6 5.9217 -0.9752 3.5512 10 6 6.3336 -2.4608 3.6084 11 6 7.1225 -2.5846 4.9363 12 6 6.3352 -1.6528 5.8907 13 6 5.9230 -0.4614 5.0016 14 6 3.2886 -1.5728 -0.6628 15 6 2.0776 -0.7937 -1.2087 16 1 1.3210 -1.4835 -1.5829 17 7 2.5002 0.1255 -2.2737 18 6 2.4888 -0.5431 -3.5816 19 6 2.9263 0.4290 -4.6466 20 8 3.2185 1.5672 -4.3459 21 7 2.9921 0.0341 -5.9336 22 6 3.3906 0.9184 -6.9026 23 1 3.6515 1.9316 -6.6346 24 6 3.4589 0.5111 -8.2292 25 7 3.1419 -0.7218 -8.5552 26 14 4.0026 1.7158 -9.5493 27 1 5.4771 1.6418 -9.7100 28 1 3.3465 1.3697 -10.8357 29 1 3.6164 3.0934 -9.1516 30 1 -0.3633 -1.0260 0.0590 31 1 -0.3634 0.5641 0.8590 32 1 -0.3633 0.4619 -0.9181 33 1 1.4595 -1.6707 1.4127 34 1 2.1491 -0.1636 2.0946 35 1 4.1890 0.1927 3.0283 36 1 3.8301 -1.4882 3.4907 37 1 6.6392 -0.4115 2.9547 38 1 5.4514 -3.1008 3.6278 39 1 6.9704 -2.7130 2.7604 40 1 8.1466 -2.2328 4.8108 41 1 7.1078 -3.6119 5.3002 42 1 6.9733 -1.3163 6.7078 43 1 5.4531 -2.1620 6.2792 44 1 6.6416 0.3510 5.1093 45 1 4.9262 -0.1166 5.2764 46 1 3.1144 -2.6446 -0.7581 47 1 4.1887 -1.2904 -1.2089 48 1 1.9241 0.9539 -2.2860 49 1 3.1718 -1.3923 -3.5614 50 1 1.4803 -0.8933 -3.8018 51 1 2.7581 -0.8760 -6.1742 52 1 3.1892 -1.0060 -9.4814 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700255497.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:23 Heat of formation + Delta-G solvation = -111.416962 kcal Electronic energy + Delta-G solvation = -29262.425969 eV Core-core repulsion = 25259.662449 eV Total energy + Delta-G solvation = -4002.763520 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.30874 -40.24438 -39.48687 -38.33910 -36.21101 -35.53979 -33.49380 -33.22161 -32.54015 -30.11346 -29.51316 -28.17903 -27.31084 -26.52675 -25.67074 -23.12501 -21.64528 -21.42456 -20.92239 -20.62092 -20.09478 -19.86903 -18.28946 -17.76163 -17.47480 -16.90004 -16.61875 -16.40428 -16.22424 -16.00058 -15.71377 -15.58219 -15.21076 -14.88540 -14.68154 -14.28538 -14.16567 -14.00256 -13.85171 -13.69461 -13.52052 -13.21915 -13.14341 -12.91879 -12.88630 -12.72875 -12.44737 -12.19433 -12.14286 -12.03056 -11.95328 -11.92102 -11.82607 -11.68652 -11.53725 -11.53359 -11.50447 -11.27474 -10.78387 -10.38112 -10.04457 -9.74347 -9.35168 -8.49048 -5.98080 1.36111 1.39832 1.52718 1.66993 1.97961 2.01932 2.27236 2.87760 3.17987 3.35997 3.49736 3.51649 3.71168 3.73350 3.79760 3.98860 4.14826 4.20971 4.26340 4.34666 4.37374 4.41391 4.47955 4.53654 4.55435 4.57759 4.59834 4.66086 4.72088 4.73852 4.84604 4.86030 4.90681 4.92389 4.98361 5.05330 5.12131 5.13499 5.21966 5.27120 5.31318 5.38376 5.38661 5.44840 5.51777 5.55517 5.88044 6.08831 6.37700 6.57120 6.60139 7.09783 7.20442 7.52938 8.08235 8.68311 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016884 B = 0.001996 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.021699 B =14024.241650 C =14994.825242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 H 0.078 0.922 4 C 0.108 3.892 5 N -0.623 5.623 6 C 0.518 3.482 7 O -0.589 6.589 8 C -0.118 4.118 9 C -0.081 4.081 10 C -0.114 4.114 11 C -0.128 4.128 12 C -0.120 4.120 13 C -0.116 4.116 14 C 0.110 3.890 15 C 0.080 3.920 16 H 0.082 0.918 17 N -0.677 5.677 18 C 0.066 3.934 19 C 0.437 3.563 20 O -0.624 6.624 21 N -0.572 5.572 22 C -0.335 4.335 23 H 0.078 0.922 24 C -0.014 4.014 25 N -0.919 5.919 26 Si 0.994 3.006 27 H -0.273 1.273 28 H -0.268 1.268 29 H -0.272 1.272 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.050 0.950 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.121 0.879 37 H 0.049 0.951 38 H 0.063 0.937 39 H 0.039 0.961 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.086 0.914 46 H 0.073 0.927 47 H 0.045 0.955 48 H 0.350 0.650 49 H 0.095 0.905 50 H 0.075 0.925 51 H 0.397 0.603 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.187 -5.363 29.725 30.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.123 4.123 3 H 0.097 0.903 4 C -0.014 4.014 5 N -0.356 5.356 6 C 0.309 3.691 7 O -0.470 6.470 8 C -0.157 4.157 9 C -0.100 4.100 10 C -0.151 4.151 11 C -0.165 4.165 12 C -0.157 4.157 13 C -0.154 4.154 14 C -0.015 4.015 15 C -0.030 4.030 16 H 0.100 0.900 17 N -0.311 5.311 18 C -0.067 4.067 19 C 0.224 3.776 20 O -0.511 6.511 21 N -0.210 5.210 22 C -0.465 4.465 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.817 3.183 27 H -0.199 1.199 28 H -0.193 1.193 29 H -0.197 1.197 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.118 0.882 34 H 0.127 0.873 35 H 0.131 0.869 36 H 0.139 0.861 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.104 0.896 46 H 0.091 0.909 47 H 0.064 0.936 48 H 0.170 0.830 49 H 0.113 0.887 50 H 0.093 0.907 51 H 0.230 0.770 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.705 -5.009 29.631 30.418 hybrid contribution -0.246 -0.034 -1.893 1.909 sum -4.952 -5.043 27.738 28.624 Atomic orbital electron populations 1.21743 0.91567 1.03353 1.02828 1.22519 0.97479 0.99320 0.92991 0.90320 1.22922 0.81146 0.99735 0.97611 1.48916 1.09664 1.65983 1.11032 1.21230 0.81325 0.76702 0.89867 1.90698 1.31785 1.49892 1.74608 1.21866 0.99824 1.04832 0.89188 1.21543 0.94943 0.96732 0.96748 1.22352 0.99742 0.95815 0.97230 1.22552 0.98801 1.00244 0.94948 1.22357 1.00208 0.95757 0.97404 1.22205 1.02797 0.98118 0.92232 1.22061 0.98775 0.98443 0.82175 1.22611 0.94403 0.94357 0.91666 0.90022 1.60077 1.60347 1.08514 1.02197 1.21576 1.01495 0.95561 0.88026 1.20881 0.83303 0.89496 0.83904 1.90489 1.55662 1.22731 1.82197 1.41935 1.59497 1.13861 1.05676 1.19662 1.43808 0.95283 0.87710 0.90400 1.26060 0.96907 0.98614 0.99750 1.69672 1.48436 1.17522 1.20384 0.84918 0.78420 0.77859 0.77070 1.19858 1.19274 1.19688 0.90831 0.90160 0.93101 0.88154 0.87329 0.86945 0.86110 0.93249 0.91811 0.94216 0.92286 0.91032 0.90913 0.90498 0.91752 0.89559 0.90909 0.93596 0.82986 0.88717 0.90742 0.76954 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.17 71.98 0.66 -0.81 16 2 C -0.10 -1.63 3.13 -9.48 -0.03 -1.66 16 3 H 0.08 1.53 7.98 -2.39 -0.02 1.51 16 4 C 0.11 1.32 6.41 86.83 0.56 1.88 16 5 N -0.62 -13.73 3.29 -808.85 -2.66 -16.39 16 6 C 0.52 13.13 7.67 87.66 0.67 13.80 16 7 O -0.59 -21.16 15.12 -3.04 -0.05 -21.21 16 8 C -0.12 -1.79 3.76 29.85 0.11 -1.68 16 9 C -0.08 -1.44 2.55 -10.07 -0.03 -1.47 16 10 C -0.11 -2.22 5.40 31.69 0.17 -2.05 16 11 C -0.13 -1.90 6.91 31.91 0.22 -1.68 16 12 C -0.12 -1.29 6.83 31.67 0.22 -1.08 16 13 C -0.12 -1.36 6.46 31.32 0.20 -1.16 16 14 C 0.11 2.85 6.71 86.53 0.58 3.43 16 15 C 0.08 1.77 2.90 45.80 0.13 1.90 16 16 H 0.08 1.52 7.55 -2.39 -0.02 1.50 16 17 N -0.68 -21.49 5.80 -491.01 -2.85 -24.34 16 18 C 0.07 2.29 6.01 85.56 0.51 2.81 16 19 C 0.44 21.34 7.82 87.65 0.69 22.03 16 20 O -0.62 -35.58 15.78 -3.06 -0.05 -35.63 16 21 N -0.57 -30.11 5.29 -306.99 -1.62 -31.73 16 22 C -0.34 -19.47 9.68 84.04 0.81 -18.66 16 23 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 24 C -0.01 -0.74 5.50 84.92 0.47 -0.27 16 25 N -0.92 -50.35 13.05 21.66 0.28 -50.06 16 26 Si 0.99 43.76 29.55 68.60 2.03 45.79 16 27 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 28 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 29 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 30 H 0.07 0.60 8.10 -2.39 -0.02 0.58 16 31 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.10 0.79 8.02 -2.39 -0.02 0.77 16 34 H 0.11 0.78 7.23 -2.39 -0.02 0.76 16 35 H 0.11 1.26 7.91 -2.38 -0.02 1.24 16 36 H 0.12 1.14 8.02 -2.39 -0.02 1.12 16 37 H 0.05 1.18 7.95 -2.38 -0.02 1.16 16 38 H 0.06 1.16 7.77 -2.38 -0.02 1.14 16 39 H 0.04 1.03 7.63 -2.38 -0.02 1.02 16 40 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 44 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.09 0.67 7.67 -2.39 -0.02 0.65 16 46 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 47 H 0.05 1.62 7.84 -2.39 -0.02 1.60 16 48 H 0.35 11.32 8.06 -89.69 -0.72 10.59 16 49 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 50 H 0.07 2.17 8.07 -2.39 -0.02 2.16 16 51 H 0.40 19.75 7.90 -92.71 -0.73 19.01 16 52 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -78.43 412.54 0.49 -77.94 By element: Atomic # 1 Polarization: 40.83 SS G_CDS: -0.54 Total: 40.29 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: 5.95 Total: 15.35 kcal Atomic # 7 Polarization: -115.67 SS G_CDS: -6.85 Total: -122.53 kcal Atomic # 8 Polarization: -56.74 SS G_CDS: -0.09 Total: -56.84 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -78.43 0.49 -77.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700255497.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.478 kcal (2) G-P(sol) polarization free energy of solvation -78.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds