Wall clock time and date at job start Tue Mar 31 2020 20:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.64042 * 2 1 4 4 C 1.54319 * 110.71855 * 123.13965 * 2 1 3 5 5 N 1.47021 * 107.27341 * 140.56072 * 4 2 1 6 6 C 1.34774 * 125.65081 * 181.02633 * 5 4 2 7 7 O 1.21285 * 119.99791 * 180.02562 * 6 5 4 8 8 C 1.50699 * 120.00115 * 0.02562 * 6 5 4 9 9 C 1.52998 * 109.47150 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.46955 * 180.02562 * 9 8 6 11 11 C 1.53786 * 113.61068 * 272.49478 * 10 9 8 12 12 C 1.53781 * 87.07968 * 220.01887 * 11 10 9 13 13 C 1.53777 * 87.08393 * 25.43464 * 12 11 10 14 14 C 1.47428 * 108.69929 * 1.28353 * 5 4 2 15 15 C 1.55124 * 104.72490 * 335.55533 * 14 5 4 16 16 H 1.08997 * 110.90831 * 155.27162 * 15 14 5 17 17 N 1.46898 * 111.22604 * 279.18058 * 15 14 5 18 18 C 1.46907 * 110.99790 * 274.92703 * 17 15 14 19 19 C 1.50695 * 109.47251 * 179.97438 * 18 17 15 20 20 O 1.21294 * 120.00276 * 0.02562 * 19 18 17 21 21 N 1.34775 * 120.00056 * 179.97438 * 19 18 17 22 22 C 1.37102 * 119.99915 * 179.97438 * 21 19 18 23 23 H 1.07999 * 120.00192 * 0.02562 * 22 21 19 24 24 C 1.38951 * 119.99729 * 180.02562 * 22 21 19 25 25 N 1.31415 * 120.00226 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99980 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.46724 * 60.00190 * 26 24 22 28 28 H 1.48498 * 109.47269 * 180.02562 * 26 24 22 29 29 H 1.48507 * 109.46933 * 300.00504 * 26 24 22 30 30 H 1.08996 * 109.47360 * 304.16734 * 1 2 3 31 31 H 1.09001 * 109.46852 * 64.16741 * 1 2 3 32 32 H 1.08998 * 109.46987 * 184.16343 * 1 2 3 33 33 H 1.09003 * 109.88643 * 21.13676 * 4 2 1 34 34 H 1.09001 * 110.01014 * 260.04632 * 4 2 1 35 35 H 1.09005 * 109.46987 * 60.00093 * 8 6 5 36 36 H 1.08998 * 109.47093 * 300.00655 * 8 6 5 37 37 H 1.09002 * 109.47284 * 299.99600 * 9 8 6 38 38 H 1.08996 * 109.47644 * 60.00006 * 9 8 6 39 39 H 1.08992 * 112.85181 * 43.80208 * 10 9 8 40 40 H 1.08997 * 113.61783 * 334.56485 * 11 10 9 41 41 H 1.08996 * 113.61257 * 105.47342 * 11 10 9 42 42 H 1.08996 * 113.61717 * 270.88234 * 12 11 10 43 43 H 1.09000 * 113.61426 * 139.97903 * 12 11 10 44 44 H 1.08993 * 113.61727 * 220.02270 * 13 12 11 45 45 H 1.09000 * 113.61490 * 89.11184 * 13 12 11 46 46 H 1.09000 * 110.36431 * 94.48769 * 14 5 4 47 47 H 1.08999 * 110.36430 * 216.80555 * 14 5 4 48 48 H 1.00899 * 111.00363 * 150.98240 * 17 15 14 49 49 H 1.09001 * 109.46945 * 300.00537 * 18 17 15 50 50 H 1.09000 * 109.46881 * 60.00065 * 18 17 15 51 51 H 0.96996 * 119.99918 * 0.02562 * 21 19 18 52 52 H 0.96997 * 119.99760 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7891 1.2086 5 7 3.2445 -1.5494 0.7418 6 6 3.9923 -2.3810 1.4940 7 8 4.9384 -2.9584 1.0016 8 6 3.6528 -2.5933 2.9468 9 6 4.6500 -3.5751 3.5653 10 6 4.3049 -3.7912 5.0401 11 6 4.9570 -2.7652 5.9820 12 6 5.2026 -3.9312 6.9541 13 6 5.1752 -4.8571 5.7267 14 6 3.4666 -1.2467 -0.6839 15 6 2.0790 -0.7975 -1.2124 16 1 2.1850 -0.1554 -2.0867 17 7 1.2244 -1.9540 -1.5124 18 6 1.4844 -2.4639 -2.8654 19 6 0.5918 -3.6474 -3.1364 20 8 -0.1849 -4.0285 -2.2863 21 7 0.6559 -4.2819 -4.3237 22 6 -0.1558 -5.3590 -4.5700 23 1 -0.8468 -5.6988 -3.8128 24 6 -0.0894 -6.0135 -5.7940 25 7 0.7518 -5.6003 -6.7152 26 14 -1.1958 -7.4806 -6.1299 27 1 -2.6169 -7.0635 -6.0227 28 1 -0.9325 -7.9963 -7.4973 29 1 -0.9170 -8.5485 -5.1363 30 1 -0.3634 0.5771 0.8502 31 1 -0.3633 0.4478 -0.9250 32 1 -0.3633 -1.0249 0.0746 33 1 1.3129 -1.4731 1.5802 34 1 2.3735 -0.1009 1.9998 35 1 2.6444 -2.9992 3.0287 36 1 3.7053 -1.6414 3.4751 37 1 4.5978 -4.5271 3.0371 38 1 5.6582 -3.1689 3.4834 39 1 3.2365 -3.9243 5.2098 40 1 5.8728 -2.3278 5.5846 41 1 4.2607 -2.0182 6.3632 42 1 4.3797 -4.1018 7.6482 43 1 6.1732 -3.8904 7.4486 44 1 4.6551 -5.7988 5.9017 45 1 6.1507 -4.9916 5.2593 46 1 4.1947 -0.4428 -0.7920 47 1 3.8032 -2.1382 -1.2130 48 1 0.2492 -1.7234 -1.3942 49 1 1.2803 -1.6798 -3.5946 50 1 2.5275 -2.7704 -2.9439 51 1 1.2767 -3.9769 -5.0037 52 1 0.7984 -6.0574 -7.5695 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700263305.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:06 Heat of formation + Delta-G solvation = -60.472095 kcal Electronic energy + Delta-G solvation = -29362.214703 eV Core-core repulsion = 25361.660318 eV Total energy + Delta-G solvation = -4000.554385 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.30715 -39.20778 -38.38923 -37.72577 -34.54218 -33.76789 -32.86129 -32.39841 -31.18806 -29.31200 -26.98695 -26.36418 -26.02633 -25.73348 -24.07178 -22.77189 -21.70736 -19.79247 -19.70697 -19.42934 -18.98409 -17.89270 -17.06676 -16.75830 -16.09506 -15.87449 -15.61890 -15.35432 -15.02146 -14.62925 -14.38587 -14.10451 -13.87119 -13.80393 -13.55008 -13.27116 -12.97078 -12.90743 -12.68968 -12.68031 -12.47408 -12.29678 -12.02800 -12.01842 -11.65332 -11.54270 -11.53055 -11.24499 -11.13768 -11.05275 -10.95824 -10.79283 -10.73619 -10.44621 -10.43398 -10.31579 -10.20245 -9.70446 -9.48986 -8.60288 -8.43725 -8.07781 -7.94945 -6.40385 -3.81269 2.73546 3.02312 3.21026 3.26650 3.31028 3.91348 4.03403 4.20853 4.25991 4.34417 4.40044 4.41282 4.51224 4.60820 4.69328 4.80232 5.00533 5.08570 5.12587 5.16603 5.25514 5.27172 5.31704 5.34094 5.43654 5.46269 5.48716 5.51042 5.52239 5.56183 5.63947 5.68832 5.70189 5.72431 5.80086 5.85131 5.88585 5.95321 5.99107 6.06075 6.14072 6.15138 6.25336 6.31644 6.34673 7.19289 7.56079 7.56955 7.64344 8.07045 8.25981 8.62226 9.18761 9.55303 10.06608 10.77245 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011402 B = 0.002297 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.188296 B =12184.840229 C =13671.124096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.101 4.101 3 H 0.088 0.912 4 C 0.113 3.887 5 N -0.607 5.607 6 C 0.528 3.472 7 O -0.544 6.544 8 C -0.133 4.133 9 C -0.094 4.094 10 C -0.112 4.112 11 C -0.139 4.139 12 C -0.144 4.144 13 C -0.138 4.138 14 C 0.115 3.885 15 C 0.073 3.927 16 H 0.064 0.936 17 N -0.658 5.658 18 C 0.050 3.950 19 C 0.441 3.559 20 O -0.584 6.584 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.066 0.934 47 H 0.083 0.917 48 H 0.354 0.646 49 H 0.044 0.956 50 H 0.085 0.915 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.321 13.654 20.464 25.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.120 4.120 3 H 0.106 0.894 4 C -0.010 4.010 5 N -0.341 5.341 6 C 0.317 3.683 7 O -0.422 6.422 8 C -0.172 4.172 9 C -0.132 4.132 10 C -0.130 4.130 11 C -0.176 4.176 12 C -0.182 4.182 13 C -0.176 4.176 14 C -0.008 4.008 15 C -0.039 4.039 16 H 0.082 0.918 17 N -0.294 5.294 18 C -0.083 4.083 19 C 0.227 3.773 20 O -0.468 6.468 21 N -0.199 5.199 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.100 0.900 46 H 0.085 0.915 47 H 0.101 0.899 48 H 0.178 0.822 49 H 0.062 0.938 50 H 0.103 0.897 51 H 0.225 0.775 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.786 12.493 20.927 25.299 hybrid contribution -0.612 0.177 -1.331 1.475 sum 6.175 12.670 19.596 24.138 Atomic orbital electron populations 1.21819 0.93609 1.03351 1.02239 1.22320 0.96825 0.98685 0.94168 0.89371 1.22026 0.88123 0.94439 0.96437 1.48296 1.29920 1.44778 1.11134 1.20371 0.81844 0.77644 0.88424 1.90704 1.29328 1.47926 1.74195 1.21633 1.01883 1.01749 0.91977 1.21335 0.98601 0.99491 0.93760 1.22596 0.99632 0.96826 0.93944 1.23002 1.00875 0.96464 0.97257 1.22812 1.01733 0.97087 0.96550 1.22940 1.00512 0.97414 0.96692 1.22317 0.95886 1.01041 0.81559 1.22753 0.93470 0.91166 0.96474 0.91822 1.60045 1.10703 1.32006 1.26649 1.21720 1.00724 0.96620 0.89237 1.19762 0.87199 0.86608 0.83739 1.90514 1.41965 1.68491 1.45876 1.41852 1.36498 1.28203 1.13382 1.19644 1.17170 1.05941 1.00144 0.88001 1.25270 0.97807 0.99443 0.95454 1.69606 1.36501 1.41739 1.06426 0.85912 0.79994 0.80949 0.77326 1.19932 1.20975 1.19879 0.91986 0.92083 0.90669 0.90832 0.91883 0.88927 0.89359 0.90932 0.91233 0.89176 0.90130 0.91711 0.90357 0.91688 0.91539 0.90017 0.91542 0.89885 0.82190 0.93777 0.89678 0.77454 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.16 37.16 0.30 -1.00 16 2 C -0.10 -0.89 3.46 -88.79 -0.31 -1.20 16 3 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 4 C 0.11 1.07 6.07 -3.07 -0.02 1.05 16 5 N -0.61 -7.70 3.32 -170.38 -0.57 -8.27 16 6 C 0.53 7.46 7.85 -10.99 -0.09 7.37 16 7 O -0.54 -9.89 16.24 5.55 0.09 -9.80 16 8 C -0.13 -1.34 4.88 -27.88 -0.14 -1.47 16 9 C -0.09 -0.97 4.34 -26.73 -0.12 -1.08 16 10 C -0.11 -0.91 3.65 -89.80 -0.33 -1.24 16 11 C -0.14 -0.99 7.63 -25.92 -0.20 -1.19 16 12 C -0.14 -0.99 8.08 -25.92 -0.21 -1.20 16 13 C -0.14 -1.09 7.64 -25.92 -0.20 -1.29 16 14 C 0.12 1.49 6.57 -2.41 -0.02 1.47 16 15 C 0.07 0.85 3.12 -65.45 -0.20 0.64 16 16 H 0.06 0.67 7.94 -51.93 -0.41 0.25 16 17 N -0.66 -10.28 5.89 -105.60 -0.62 -10.91 16 18 C 0.05 0.88 6.02 -4.97 -0.03 0.85 16 19 C 0.44 10.52 7.82 -10.99 -0.09 10.44 16 20 O -0.58 -15.91 15.78 5.55 0.09 -15.83 16 21 N -0.56 -14.47 5.29 -10.96 -0.06 -14.52 16 22 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 23 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.81 13.05 55.50 0.72 -24.09 16 26 Si 0.93 21.32 29.55 -169.99 -5.02 16.29 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 29 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.80 6.56 -51.93 -0.34 0.46 16 33 H 0.07 0.73 7.75 -51.93 -0.40 0.33 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.89 8.10 -51.93 -0.42 0.46 16 38 H 0.07 0.76 7.80 -51.93 -0.41 0.36 16 39 H 0.09 0.70 8.13 -51.93 -0.42 0.28 16 40 H 0.08 0.59 7.90 -51.93 -0.41 0.18 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.08 1.31 7.42 -51.93 -0.39 0.93 16 48 H 0.35 5.57 5.60 -39.29 -0.22 5.35 16 49 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 50 H 0.09 1.46 7.55 -51.93 -0.39 1.07 16 51 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 52 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 414.80 15.07 6.25 6.25 Total: -1.00 -33.88 414.80 -10.12 -44.01 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -9.14 Total: 12.82 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -1.87 Total: 4.04 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -0.52 Total: -57.78 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: 0.18 Total: -25.63 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.88 -10.12 -44.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700263305.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.467 kcal (2) G-P(sol) polarization free energy of solvation -33.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds