Wall clock time and date at job start Tue Mar 31 2020 20:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 110.63653 * 2 1 4 4 C 1.54329 * 110.85025 * 236.83019 * 2 1 3 5 5 N 1.47022 * 107.26487 * 219.67062 * 4 2 1 6 6 C 1.34779 * 125.64424 * 178.84859 * 5 4 2 7 7 O 1.21277 * 120.00362 * 359.72660 * 6 5 4 8 8 C 1.50701 * 119.99485 * 179.71837 * 6 5 4 9 9 C 1.53003 * 109.46985 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47256 * 180.02562 * 9 8 6 11 11 O 1.21277 * 119.99836 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99945 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99810 * 179.97438 * 12 10 9 14 14 C 1.54893 * 110.59870 * 269.83866 * 13 12 10 15 15 C 1.54887 * 102.74533 * 203.32520 * 14 13 12 16 16 C 1.54266 * 104.19888 * 37.94403 * 15 14 13 17 17 C 1.53872 * 106.59640 * 336.38805 * 16 15 14 18 18 C 1.47420 * 108.70302 * 358.59137 * 5 4 2 19 19 C 1.54909 * 104.83312 * 24.35092 * 18 5 4 20 20 H 1.08998 * 111.00510 * 204.87916 * 19 18 5 21 21 N 1.46511 * 111.00247 * 81.06608 * 19 18 5 22 22 C 1.36932 * 119.99825 * 86.45393 * 21 19 18 23 23 H 1.08007 * 120.00414 * 359.97438 * 22 21 19 24 24 C 1.38810 * 119.99890 * 179.97438 * 22 21 19 25 25 N 1.31619 * 119.99989 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 120.00204 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46791 * 90.00252 * 26 24 22 28 28 H 1.48500 * 109.47151 * 210.00108 * 26 24 22 29 29 H 1.48498 * 109.47113 * 330.00623 * 26 24 22 30 30 H 1.09000 * 109.47236 * 296.86041 * 1 2 3 31 31 H 1.09000 * 109.46368 * 56.86190 * 1 2 3 32 32 H 1.09000 * 109.46989 * 176.85489 * 1 2 3 33 33 H 1.09006 * 109.99215 * 100.20122 * 4 2 1 34 34 H 1.08996 * 109.78167 * 339.03544 * 4 2 1 35 35 H 1.08997 * 109.47225 * 60.00599 * 8 6 5 36 36 H 1.08995 * 109.47687 * 299.99864 * 8 6 5 37 37 H 1.09006 * 109.46882 * 60.00195 * 9 8 6 38 38 H 1.09002 * 109.47241 * 300.00713 * 9 8 6 39 39 H 0.97001 * 120.00388 * 0.02562 * 12 10 9 40 40 H 1.09001 * 110.43361 * 32.46052 * 13 12 10 41 41 H 1.09001 * 110.75228 * 85.01255 * 14 13 12 42 42 H 1.09000 * 110.75571 * 321.63889 * 14 13 12 43 43 H 1.09001 * 110.48816 * 279.26329 * 15 14 13 44 44 H 1.09004 * 110.48531 * 156.62545 * 15 14 13 45 45 H 1.09003 * 110.03179 * 95.67576 * 16 15 14 46 46 H 1.09005 * 110.03005 * 217.10316 * 16 15 14 47 47 H 1.09002 * 110.03208 * 119.28196 * 17 16 15 48 48 H 1.08996 * 110.03362 * 240.71095 * 17 16 15 49 49 H 1.08998 * 110.36663 * 143.19149 * 18 5 4 50 50 H 1.08997 * 110.36570 * 265.51371 * 18 5 4 51 51 H 0.96991 * 119.99690 * 266.45282 * 21 19 18 52 52 H 0.96996 * 119.99995 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0794 -0.7891 -1.2072 5 7 3.2446 -1.5519 -0.7362 6 6 3.9924 -2.3861 -1.4856 7 8 3.7194 -2.5608 -2.6542 8 6 5.1678 -3.1016 -0.8711 9 6 5.8406 -3.9788 -1.9289 10 6 7.0157 -4.6948 -1.3144 11 8 7.2885 -4.5203 -0.1457 12 7 7.7640 -5.5283 -2.0639 13 6 8.9067 -6.2239 -1.4667 14 6 10.1966 -5.3792 -1.6142 15 6 11.3161 -6.4453 -1.5174 16 6 10.7456 -7.6628 -2.2739 17 6 9.2137 -7.5219 -2.2416 18 6 3.4633 -1.2486 0.6898 19 6 2.0790 -0.7933 1.2152 20 1 2.1849 -0.1487 2.0877 21 7 1.2271 -1.9462 1.5178 22 6 1.2982 -2.5462 2.7466 23 1 1.9826 -2.1699 3.4926 24 6 0.4907 -3.6382 3.0336 25 7 -0.3430 -4.0972 2.1243 26 14 0.5882 -4.4573 4.7097 27 1 -0.3807 -3.8130 5.6324 28 1 0.2603 -5.8994 4.5757 29 1 1.9622 -4.3103 5.2532 30 1 -0.3634 0.4643 0.9168 31 1 -0.3632 0.5618 -0.8606 32 1 -0.3633 -1.0261 -0.0564 33 1 2.3816 -0.1004 -1.9963 34 1 1.3157 -1.4714 -1.5803 35 1 4.8228 -3.7259 -0.0469 36 1 5.8840 -2.3698 -0.4976 37 1 6.1857 -3.3542 -2.7529 38 1 5.1247 -4.7107 -2.3030 39 1 7.5465 -5.6670 -2.9990 40 1 8.7122 -6.4433 -0.4168 41 1 10.2801 -4.6566 -0.8024 42 1 10.2222 -4.8791 -2.5823 43 1 11.5108 -6.7005 -0.4757 44 1 12.2258 -6.0882 -2.0001 45 1 11.0992 -7.6609 -3.3049 46 1 11.0464 -8.5853 -1.7773 47 1 8.8238 -7.4516 -3.2571 48 1 8.7709 -8.3762 -1.7295 49 1 3.7960 -2.1405 1.2207 50 1 4.1931 -0.4465 0.7993 51 1 0.6128 -2.2844 0.8478 52 1 -0.9075 -4.8600 2.3249 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700271413.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:11 Heat of formation + Delta-G solvation = -100.845538 kcal Electronic energy + Delta-G solvation = -29572.792669 eV Core-core repulsion = 25570.487560 eV Total energy + Delta-G solvation = -4002.305109 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.36105 -40.81257 -39.11039 -38.62157 -35.65254 -34.76213 -34.17369 -33.52255 -32.21684 -29.65893 -29.36314 -29.08156 -27.71297 -25.83880 -25.51394 -23.32800 -21.78691 -21.52193 -21.12813 -20.64495 -20.11315 -19.34967 -18.55470 -17.65275 -17.43491 -17.20649 -16.97408 -16.37731 -16.33683 -15.98364 -15.75982 -15.41933 -15.02372 -14.77841 -14.51106 -14.42669 -14.32047 -14.05844 -13.75489 -13.52543 -13.41503 -13.21502 -13.02549 -12.96026 -12.84460 -12.80699 -12.54490 -12.28270 -12.21833 -12.13533 -12.11123 -12.00693 -11.95439 -11.76800 -11.47842 -11.34602 -11.34327 -11.04322 -10.94220 -10.85979 -10.06303 -9.64339 -8.94394 -7.92595 -5.19916 1.47828 1.48898 1.56599 1.57746 1.60076 1.92864 2.32782 2.56897 3.38181 3.42011 3.57517 3.66526 3.71403 3.88791 3.89667 3.95630 3.98676 4.05823 4.11102 4.13133 4.44517 4.47739 4.49972 4.50569 4.55960 4.60265 4.66396 4.67766 4.75091 4.76938 4.82225 4.85826 4.88895 4.92215 4.98899 5.02543 5.05350 5.16510 5.19545 5.22269 5.25826 5.26694 5.42419 5.44938 5.53736 5.58488 5.60285 6.29253 6.50700 6.57704 7.12967 7.22330 7.36586 8.12649 8.34408 9.30831 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011114 B = 0.002566 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.822971 B =10910.832653 C =12652.191156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.098 4.098 3 H 0.119 0.881 4 C 0.115 3.885 5 N -0.606 5.606 6 C 0.524 3.476 7 O -0.586 6.586 8 C -0.111 4.111 9 C -0.115 4.115 10 C 0.516 3.484 11 O -0.580 6.580 12 N -0.712 5.712 13 C 0.131 3.869 14 C -0.133 4.133 15 C -0.122 4.122 16 C -0.119 4.119 17 C -0.126 4.126 18 C 0.076 3.924 19 C 0.157 3.843 20 H 0.084 0.916 21 N -0.721 5.721 22 C -0.232 4.232 23 H 0.082 0.918 24 C -0.075 4.075 25 N -0.970 5.970 26 Si 0.965 3.035 27 H -0.287 1.287 28 H -0.303 1.303 29 H -0.270 1.270 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.031 0.969 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.118 0.882 38 H 0.102 0.898 39 H 0.416 0.584 40 H 0.067 0.933 41 H 0.050 0.950 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.086 0.914 48 H 0.070 0.930 49 H 0.060 0.940 50 H 0.094 0.906 51 H 0.374 0.626 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.662 1.197 -11.792 23.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.117 4.117 3 H 0.137 0.863 4 C -0.007 4.007 5 N -0.338 5.338 6 C 0.314 3.686 7 O -0.468 6.468 8 C -0.151 4.151 9 C -0.155 4.155 10 C 0.303 3.697 11 O -0.460 6.460 12 N -0.364 5.364 13 C 0.026 3.974 14 C -0.172 4.172 15 C -0.160 4.160 16 C -0.156 4.156 17 C -0.165 4.165 18 C -0.049 4.049 19 C 0.047 3.953 20 H 0.102 0.898 21 N -0.361 5.361 22 C -0.364 4.364 23 H 0.099 0.901 24 C -0.267 4.267 25 N -0.621 5.621 26 Si 0.796 3.204 27 H -0.214 1.214 28 H -0.230 1.230 29 H -0.195 1.195 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.101 0.899 36 H 0.125 0.875 37 H 0.136 0.864 38 H 0.120 0.880 39 H 0.253 0.747 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.091 0.909 47 H 0.104 0.896 48 H 0.088 0.912 49 H 0.078 0.922 50 H 0.112 0.888 51 H 0.207 0.793 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 20.800 1.128 -11.426 23.759 hybrid contribution -0.824 -1.074 0.500 1.443 sum 19.977 0.054 -10.927 22.770 Atomic orbital electron populations 1.21533 0.93906 1.00979 1.02016 1.22485 0.96620 0.99785 0.92833 0.86265 1.22002 0.87187 0.94083 0.97469 1.48457 1.29559 1.43614 1.12162 1.20608 0.84060 0.78361 0.85588 1.90622 1.72847 1.65469 1.17844 1.21228 0.95086 0.99750 0.99065 1.21306 0.95298 0.99882 0.99017 1.20849 0.83639 0.79041 0.86122 1.90703 1.72064 1.64874 1.18360 1.45980 1.30255 1.45390 1.14800 1.21938 0.85066 0.92584 0.97776 1.22855 0.94378 0.97987 1.01971 1.22315 0.97857 0.94933 1.00894 1.22090 0.93579 0.98424 1.01547 1.22395 0.97505 0.95551 1.01000 1.23323 1.00757 1.01090 0.79763 1.21697 0.88698 0.88784 0.96126 0.89821 1.42548 1.45843 1.33837 1.13877 1.19633 1.16663 1.08270 0.91806 0.90050 1.25471 0.99814 1.00363 1.01065 1.69820 1.28839 1.28124 1.35299 0.85250 0.77924 0.76968 0.80303 1.21418 1.23041 1.19456 0.92358 0.90931 0.94980 0.90381 0.94201 0.89875 0.87453 0.86411 0.88021 0.74686 0.91454 0.93077 0.90290 0.91808 0.90159 0.90210 0.90926 0.89589 0.91168 0.92169 0.88764 0.79296 0.94347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.85 8.72 71.99 0.63 -3.23 16 2 C -0.10 -2.80 3.41 -9.60 -0.03 -2.83 16 3 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 4 C 0.12 3.67 6.47 86.73 0.56 4.23 16 5 N -0.61 -20.59 3.33 -811.80 -2.70 -23.29 16 6 C 0.52 18.26 7.85 87.66 0.69 18.95 16 7 O -0.59 -22.96 16.31 -3.02 -0.05 -23.01 16 8 C -0.11 -3.31 4.00 29.85 0.12 -3.19 16 9 C -0.11 -2.79 4.99 29.85 0.15 -2.64 16 10 C 0.52 13.07 7.83 87.66 0.69 13.76 16 11 O -0.58 -19.63 15.63 -3.02 -0.05 -19.68 16 12 N -0.71 -12.86 5.16 -437.45 -2.26 -15.12 16 13 C 0.13 2.32 3.22 46.07 0.15 2.47 16 14 C -0.13 -2.11 6.58 31.89 0.21 -1.90 16 15 C -0.12 -1.44 6.83 31.67 0.22 -1.22 16 16 C -0.12 -1.14 6.80 31.32 0.21 -0.93 16 17 C -0.13 -1.49 6.53 31.32 0.20 -1.29 16 18 C 0.08 2.45 6.38 86.86 0.55 3.00 16 19 C 0.16 5.52 3.44 46.38 0.16 5.68 16 20 H 0.08 2.76 8.13 -2.39 -0.02 2.74 16 21 N -0.72 -34.12 4.74 -316.36 -1.50 -35.62 16 22 C -0.23 -12.27 9.98 84.03 0.84 -11.43 16 23 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 24 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 25 N -0.97 -59.35 13.06 21.65 0.28 -59.07 16 26 Si 0.97 46.12 29.55 68.60 2.03 48.15 16 27 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 28 H -0.30 -14.91 7.11 99.48 0.71 -14.21 16 29 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.03 1.21 6.36 -2.39 -0.02 1.20 16 33 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 34 H 0.04 1.48 7.77 -2.39 -0.02 1.46 16 35 H 0.08 2.85 7.80 -2.39 -0.02 2.83 16 36 H 0.11 2.92 8.10 -2.39 -0.02 2.90 16 37 H 0.12 2.42 8.10 -2.38 -0.02 2.40 16 38 H 0.10 2.48 8.10 -2.39 -0.02 2.46 16 39 H 0.42 4.91 8.37 -92.71 -0.78 4.14 16 40 H 0.07 1.59 7.55 -2.39 -0.02 1.57 16 41 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 45 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 47 H 0.09 0.76 7.73 -2.39 -0.02 0.74 16 48 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.06 2.23 7.48 -2.39 -0.02 2.21 16 50 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 51 H 0.37 19.67 6.08 -92.71 -0.56 19.11 16 52 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -73.39 413.04 1.14 -72.25 By element: Atomic # 1 Polarization: 40.16 SS G_CDS: -0.43 Total: 39.73 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: 5.81 Total: 15.65 kcal Atomic # 7 Polarization: -126.92 SS G_CDS: -6.18 Total: -133.09 kcal Atomic # 8 Polarization: -42.59 SS G_CDS: -0.10 Total: -42.69 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -73.39 1.14 -72.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700271413.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.594 kcal (2) G-P(sol) polarization free energy of solvation -73.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds