Wall clock time and date at job start Tue Mar 31 2020 21:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08990 * 109.47465 * 2 1 4 4 N 1.46502 * 109.46882 * 239.99297 * 2 1 3 5 5 C 1.34779 * 119.99584 * 85.00727 * 4 2 1 6 6 O 1.21277 * 120.00426 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99761 * 179.97438 * 5 4 2 8 8 N 1.46501 * 109.47234 * 179.97438 * 7 5 4 9 9 C 1.34772 * 120.00128 * 180.02562 * 8 7 5 10 10 O 1.21279 * 119.99863 * 0.02562 * 9 8 7 11 11 C 1.50698 * 120.00024 * 180.02562 * 9 8 7 12 12 C 1.52999 * 109.47103 * 179.97438 * 11 9 8 13 13 C 1.54261 * 110.03443 * 292.90348 * 12 11 9 14 14 C 1.54965 * 104.16274 * 217.13619 * 13 12 11 15 15 C 1.54890 * 102.77637 * 37.88773 * 14 13 12 16 16 C 1.53877 * 110.02910 * 175.68623 * 12 11 9 17 17 C 1.53000 * 109.46697 * 119.99902 * 2 1 3 18 18 C 1.53497 * 114.20787 * 299.99699 * 17 2 1 19 19 N 1.47062 * 87.98453 * 87.71861 * 18 17 2 20 20 C 1.36943 * 136.05579 * 207.08745 * 19 18 17 21 21 H 1.08002 * 119.99788 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99622 * 180.27778 * 20 19 18 23 23 N 1.31614 * 120.00467 * 359.72375 * 22 20 19 24 24 Si 1.86801 * 119.99700 * 179.72266 * 22 20 19 25 25 H 1.48501 * 109.46896 * 89.99850 * 24 22 20 26 26 H 1.48499 * 109.47039 * 210.00011 * 24 22 20 27 27 H 1.48501 * 109.47275 * 329.99811 * 24 22 20 28 28 C 1.47067 * 87.88602 * 27.34481 * 19 18 17 29 29 H 1.09010 * 109.47036 * 60.00007 * 1 2 3 30 30 H 1.08997 * 109.47848 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47365 * 300.00460 * 1 2 3 32 32 H 0.96997 * 120.00172 * 265.00348 * 4 2 1 33 33 H 1.08999 * 109.47071 * 299.99961 * 7 5 4 34 34 H 1.09001 * 109.46813 * 59.99902 * 7 5 4 35 35 H 0.97006 * 119.99711 * 0.02562 * 8 7 5 36 36 H 1.09004 * 109.47005 * 300.00121 * 11 9 8 37 37 H 1.09001 * 109.47427 * 59.99925 * 11 9 8 38 38 H 1.09002 * 110.01739 * 54.30014 * 12 11 9 39 39 H 1.08996 * 110.48771 * 335.79192 * 13 12 11 40 40 H 1.09002 * 110.48193 * 98.42775 * 13 12 11 41 41 H 1.09004 * 110.72128 * 279.57667 * 14 13 12 42 42 H 1.08996 * 110.92022 * 156.29947 * 14 13 12 43 43 H 1.08996 * 110.48730 * 203.40417 * 15 14 13 44 44 H 1.09007 * 110.59411 * 80.81705 * 15 14 13 45 45 H 1.08999 * 110.03419 * 238.56961 * 16 12 11 46 46 H 1.08994 * 110.03522 * 0.02562 * 16 12 11 47 47 H 1.09001 * 113.28445 * 166.93217 * 17 2 1 48 48 H 1.09000 * 113.46436 * 332.93489 * 18 17 2 49 49 H 1.08997 * 113.51966 * 202.51274 * 18 17 2 50 50 H 0.96995 * 120.00147 * 180.02562 * 23 22 20 51 51 H 1.08994 * 113.46653 * 87.43736 * 28 19 18 52 52 H 1.08996 * 113.46465 * 217.87717 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 7 2.0182 -0.6908 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.8583 1.1582 -2.4118 7 6 2.6499 -0.7288 -3.5874 8 7 2.6986 0.2123 -4.7091 9 6 3.1198 -0.2036 -5.9199 10 8 3.4581 -1.3571 -6.0809 11 6 3.1705 0.7646 -7.0736 12 6 3.6809 0.0433 -8.3226 13 6 5.1573 -0.3614 -8.1330 14 6 5.7902 -0.1533 -9.5321 15 6 5.0871 1.1305 -10.0386 16 6 3.6359 0.9913 -9.5339 17 6 2.0399 -0.7212 1.2493 18 6 1.5897 -0.0845 2.5714 19 7 0.3766 -0.9126 2.4972 20 6 -0.9105 -0.8194 2.9554 21 1 -1.2182 0.0423 3.5293 22 6 -1.8178 -1.8352 2.6877 23 7 -1.4426 -2.8854 1.9887 24 14 -3.5714 -1.7116 3.3194 25 1 -4.4155 -1.0288 2.3062 26 1 -4.1043 -3.0748 3.5703 27 1 -3.5883 -0.9331 4.5838 28 6 1.1558 -1.8880 1.7197 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.2489 -1.6319 -1.1525 33 1 3.6491 -1.1207 -3.3978 34 1 1.9776 -1.5511 -3.8324 35 1 2.4276 1.1348 -4.5803 36 1 2.1713 1.1569 -7.2628 37 1 3.8432 1.5866 -6.8288 38 1 3.0734 -0.8405 -8.5175 39 1 5.6381 0.2831 -7.3972 40 1 5.2306 -1.4065 -7.8318 41 1 5.5693 -0.9979 -10.1848 42 1 6.8663 0.0010 -9.4534 43 1 5.1099 1.1736 -11.1275 44 1 5.5556 2.0178 -9.6127 45 1 3.0075 0.5670 -10.3169 46 1 3.2510 1.9652 -9.2318 47 1 3.1030 -0.9579 1.2064 48 1 1.3912 0.9843 2.4930 49 1 2.2337 -0.3326 3.4151 50 1 -2.0767 -3.5951 1.8014 51 1 1.6858 -2.6121 2.3384 52 1 0.5875 -2.3555 0.9157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700547250.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:55 Heat of formation + Delta-G solvation = -31.076110 kcal Electronic energy + Delta-G solvation = -29179.213134 eV Core-core repulsion = 25179.933454 eV Total energy + Delta-G solvation = -3999.279679 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.41549 -39.70807 -38.57741 -37.92159 -34.78351 -34.30930 -32.24528 -31.94375 -30.17271 -28.93847 -27.96707 -27.64392 -25.54841 -24.73906 -24.06432 -21.71154 -21.03934 -20.70132 -20.29929 -19.78165 -18.77766 -17.71072 -16.85776 -16.50749 -16.25682 -16.06226 -15.71688 -15.45048 -15.07554 -14.92116 -14.80798 -14.42567 -13.86212 -13.73639 -13.63043 -13.57842 -13.07962 -12.87203 -12.63934 -12.34535 -12.18564 -11.79924 -11.52921 -11.37513 -11.24862 -11.23736 -11.11227 -11.05473 -10.99933 -10.89394 -10.80562 -10.70242 -10.60756 -10.37287 -10.00192 -9.96462 -9.81785 -9.71815 -9.30895 -9.21198 -8.78023 -8.74640 -6.86212 -5.80779 -3.12179 2.47367 2.65928 2.78039 3.36893 3.42478 3.43661 3.48592 4.25487 4.30967 4.41972 4.43096 4.64215 4.79137 4.89048 4.98652 5.16887 5.19512 5.24084 5.24265 5.26650 5.28570 5.34502 5.35518 5.39162 5.49049 5.53049 5.54273 5.62766 5.73990 5.82416 5.90748 6.00744 6.01854 6.04509 6.17228 6.20752 6.27598 6.37409 6.44274 6.58952 6.66200 6.72192 6.99321 7.18211 7.22501 7.33874 7.45727 7.56808 7.67562 7.93836 8.05922 8.27788 9.00531 9.67210 10.60600 11.36394 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025031 B = 0.001804 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.327980 B =15517.289965 C =15877.317228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.176 3.824 3 H 0.077 0.923 4 N -0.711 5.711 5 C 0.507 3.493 6 O -0.546 6.546 7 C 0.098 3.902 8 N -0.719 5.719 9 C 0.513 3.487 10 O -0.540 6.540 11 C -0.134 4.134 12 C -0.077 4.077 13 C -0.114 4.114 14 C -0.128 4.128 15 C -0.125 4.125 16 C -0.123 4.123 17 C -0.162 4.162 18 C 0.127 3.873 19 N -0.604 5.604 20 C -0.214 4.214 21 H 0.079 0.921 22 C -0.005 4.005 23 N -0.918 5.918 24 Si 0.908 3.092 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.157 3.843 29 H 0.027 0.973 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.402 0.598 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.412 0.588 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.070 0.930 48 H 0.041 0.959 49 H 0.035 0.965 50 H 0.253 0.747 51 H 0.023 0.977 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.519 6.570 -20.178 25.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.073 3.927 3 H 0.095 0.905 4 N -0.360 5.360 5 C 0.292 3.708 6 O -0.425 6.425 7 C -0.029 4.029 8 N -0.375 5.375 9 C 0.300 3.700 10 O -0.417 6.417 11 C -0.174 4.174 12 C -0.096 4.096 13 C -0.151 4.151 14 C -0.165 4.165 15 C -0.163 4.163 16 C -0.160 4.160 17 C -0.182 4.182 18 C 0.000 4.000 19 N -0.330 5.330 20 C -0.341 4.341 21 H 0.097 0.903 22 C -0.201 4.201 23 N -0.565 5.565 24 Si 0.738 3.262 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.208 1.208 28 C 0.031 3.969 29 H 0.046 0.954 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.236 0.764 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.249 0.751 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.088 0.912 48 H 0.060 0.940 49 H 0.053 0.947 50 H 0.063 0.937 51 H 0.041 0.959 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 13.171 6.481 -20.227 24.993 hybrid contribution -1.004 -0.174 0.779 1.283 sum 12.167 6.307 -19.448 23.792 Atomic orbital electron populations 1.22168 0.92886 1.04420 1.01065 1.20613 0.95733 0.95114 0.81273 0.90523 1.46096 1.65921 1.14248 1.09780 1.20388 0.78128 0.87449 0.84804 1.90673 1.51037 1.16030 1.84734 1.21079 1.03433 0.93020 0.85386 1.45782 1.67843 1.14910 1.08930 1.20737 0.76469 0.89296 0.83491 1.90699 1.47954 1.19232 1.83771 1.21851 1.03851 0.98342 0.93315 1.21543 0.97486 0.98099 0.92441 1.22407 0.94055 1.02285 0.96380 1.22541 0.99387 0.97616 0.96993 1.22359 0.95534 0.98157 1.00229 1.22241 0.97134 0.99442 0.97207 1.23378 0.98408 1.01636 0.94764 1.22339 0.89006 0.95720 0.92970 1.45659 1.04223 1.20025 1.63085 1.18863 0.83161 1.03678 1.28427 0.90275 1.24722 0.98091 0.96484 1.00831 1.69793 1.34052 1.09491 1.43173 0.86185 0.84732 0.76783 0.78464 1.21538 1.21730 1.20767 1.22213 0.89388 0.90656 0.94604 0.95435 0.90400 0.89520 0.76395 0.88537 0.88388 0.75072 0.88756 0.88729 0.90156 0.92091 0.90726 0.91621 0.91806 0.91920 0.91736 0.91675 0.91596 0.91199 0.94049 0.94747 0.93714 0.95910 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.07 37.16 0.30 -2.66 16 2 C 0.18 2.95 2.76 -67.93 -0.19 2.76 16 3 H 0.08 1.33 7.58 -51.93 -0.39 0.94 16 4 N -0.71 -9.85 5.08 -53.81 -0.27 -10.12 16 5 C 0.51 6.96 7.86 -10.98 -0.09 6.87 16 6 O -0.55 -9.11 15.33 5.56 0.09 -9.03 16 7 C 0.10 1.09 6.15 -5.19 -0.03 1.06 16 8 N -0.72 -7.66 5.53 -61.47 -0.34 -8.00 16 9 C 0.51 5.53 7.61 -10.99 -0.08 5.44 16 10 O -0.54 -7.45 14.78 5.56 0.08 -7.36 16 11 C -0.13 -1.01 4.83 -27.88 -0.13 -1.15 16 12 C -0.08 -0.61 2.55 -89.50 -0.23 -0.84 16 13 C -0.11 -0.96 5.40 -25.03 -0.14 -1.10 16 14 C -0.13 -0.89 6.91 -24.70 -0.17 -1.06 16 15 C -0.13 -0.77 6.83 -25.07 -0.17 -0.94 16 16 C -0.12 -0.78 6.46 -25.61 -0.17 -0.94 16 17 C -0.16 -2.75 4.24 -89.97 -0.38 -3.14 16 18 C 0.13 2.43 7.85 -8.51 -0.07 2.36 16 19 N -0.60 -14.25 2.18 -184.61 -0.40 -14.66 16 20 C -0.21 -5.65 9.60 -15.06 -0.14 -5.79 16 21 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 22 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 23 N -0.92 -25.75 11.50 55.49 0.64 -25.11 16 24 Si 0.91 21.59 29.55 -169.99 -5.02 16.57 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 C 0.16 3.36 6.41 -8.37 -0.05 3.30 16 29 H 0.03 0.54 8.14 -51.92 -0.42 0.11 16 30 H 0.08 1.78 6.33 -51.93 -0.33 1.45 16 31 H 0.09 1.93 5.95 -51.93 -0.31 1.62 16 32 H 0.40 4.75 8.60 -40.82 -0.35 4.40 16 33 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.41 4.20 7.44 -40.82 -0.30 3.89 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.59 8.02 -51.93 -0.42 0.17 16 38 H 0.08 0.75 7.95 -51.93 -0.41 0.34 16 39 H 0.06 0.52 7.77 -51.93 -0.40 0.11 16 40 H 0.07 0.76 7.63 -51.93 -0.40 0.37 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.36 7.67 -51.93 -0.40 -0.04 16 47 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16 49 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 51 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 52 H 0.08 1.80 5.72 -51.93 -0.30 1.50 16 LS Contribution 406.92 15.07 6.13 6.13 Total: -1.00 -31.29 406.92 -9.99 -41.28 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -9.05 Total: 6.32 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -1.84 Total: 3.97 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.38 Total: -57.89 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: 0.17 Total: -16.39 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.29 -9.99 -41.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700547250.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.208 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds