Wall clock time and date at job start Tue Mar 31 2020 21:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08990 * 109.47465 * 2 1 4 4 N 1.46502 * 109.46882 * 239.99297 * 2 1 3 5 5 C 1.34779 * 119.99584 * 85.00727 * 4 2 1 6 6 O 1.21277 * 120.00426 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99761 * 179.97438 * 5 4 2 8 8 N 1.46501 * 109.47234 * 179.97438 * 7 5 4 9 9 C 1.34772 * 120.00128 * 180.02562 * 8 7 5 10 10 O 1.21279 * 119.99863 * 0.02562 * 9 8 7 11 11 C 1.50698 * 120.00024 * 180.02562 * 9 8 7 12 12 C 1.52999 * 109.47103 * 179.97438 * 11 9 8 13 13 C 1.54261 * 110.03443 * 292.90348 * 12 11 9 14 14 C 1.54965 * 104.16274 * 217.13619 * 13 12 11 15 15 C 1.54890 * 102.77637 * 37.88773 * 14 13 12 16 16 C 1.53877 * 110.02910 * 175.68623 * 12 11 9 17 17 C 1.53000 * 109.46697 * 119.99902 * 2 1 3 18 18 C 1.53497 * 114.20787 * 299.99699 * 17 2 1 19 19 N 1.47062 * 87.98453 * 87.71861 * 18 17 2 20 20 C 1.36943 * 136.05579 * 207.08745 * 19 18 17 21 21 H 1.08002 * 119.99788 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99622 * 180.27778 * 20 19 18 23 23 N 1.31614 * 120.00467 * 359.72375 * 22 20 19 24 24 Si 1.86801 * 119.99700 * 179.72266 * 22 20 19 25 25 H 1.48501 * 109.46896 * 89.99850 * 24 22 20 26 26 H 1.48499 * 109.47039 * 210.00011 * 24 22 20 27 27 H 1.48501 * 109.47275 * 329.99811 * 24 22 20 28 28 C 1.47067 * 87.88602 * 27.34481 * 19 18 17 29 29 H 1.09010 * 109.47036 * 60.00007 * 1 2 3 30 30 H 1.08997 * 109.47848 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47365 * 300.00460 * 1 2 3 32 32 H 0.96997 * 120.00172 * 265.00348 * 4 2 1 33 33 H 1.08999 * 109.47071 * 299.99961 * 7 5 4 34 34 H 1.09001 * 109.46813 * 59.99902 * 7 5 4 35 35 H 0.97006 * 119.99711 * 0.02562 * 8 7 5 36 36 H 1.09004 * 109.47005 * 300.00121 * 11 9 8 37 37 H 1.09001 * 109.47427 * 59.99925 * 11 9 8 38 38 H 1.09002 * 110.01739 * 54.30014 * 12 11 9 39 39 H 1.08996 * 110.48771 * 335.79192 * 13 12 11 40 40 H 1.09002 * 110.48193 * 98.42775 * 13 12 11 41 41 H 1.09004 * 110.72128 * 279.57667 * 14 13 12 42 42 H 1.08996 * 110.92022 * 156.29947 * 14 13 12 43 43 H 1.08996 * 110.48730 * 203.40417 * 15 14 13 44 44 H 1.09007 * 110.59411 * 80.81705 * 15 14 13 45 45 H 1.08999 * 110.03419 * 238.56961 * 16 12 11 46 46 H 1.08994 * 110.03522 * 0.02562 * 16 12 11 47 47 H 1.09001 * 113.28445 * 166.93217 * 17 2 1 48 48 H 1.09000 * 113.46436 * 332.93489 * 18 17 2 49 49 H 1.08997 * 113.51966 * 202.51274 * 18 17 2 50 50 H 0.96995 * 120.00147 * 180.02562 * 23 22 20 51 51 H 1.08994 * 113.46653 * 87.43736 * 28 19 18 52 52 H 1.08996 * 113.46465 * 217.87717 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 7 2.0182 -0.6908 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.8583 1.1582 -2.4118 7 6 2.6499 -0.7288 -3.5874 8 7 2.6986 0.2123 -4.7091 9 6 3.1198 -0.2036 -5.9199 10 8 3.4581 -1.3571 -6.0809 11 6 3.1705 0.7646 -7.0736 12 6 3.6809 0.0433 -8.3226 13 6 5.1573 -0.3614 -8.1330 14 6 5.7902 -0.1533 -9.5321 15 6 5.0871 1.1305 -10.0386 16 6 3.6359 0.9913 -9.5339 17 6 2.0399 -0.7212 1.2493 18 6 1.5897 -0.0845 2.5714 19 7 0.3766 -0.9126 2.4972 20 6 -0.9105 -0.8194 2.9554 21 1 -1.2182 0.0423 3.5293 22 6 -1.8178 -1.8352 2.6877 23 7 -1.4426 -2.8854 1.9887 24 14 -3.5714 -1.7116 3.3194 25 1 -4.4155 -1.0288 2.3062 26 1 -4.1043 -3.0748 3.5703 27 1 -3.5883 -0.9331 4.5838 28 6 1.1558 -1.8880 1.7197 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 2.2489 -1.6319 -1.1525 33 1 3.6491 -1.1207 -3.3978 34 1 1.9776 -1.5511 -3.8324 35 1 2.4276 1.1348 -4.5803 36 1 2.1713 1.1569 -7.2628 37 1 3.8432 1.5866 -6.8288 38 1 3.0734 -0.8405 -8.5175 39 1 5.6381 0.2831 -7.3972 40 1 5.2306 -1.4065 -7.8318 41 1 5.5693 -0.9979 -10.1848 42 1 6.8663 0.0010 -9.4534 43 1 5.1099 1.1736 -11.1275 44 1 5.5556 2.0178 -9.6127 45 1 3.0075 0.5670 -10.3169 46 1 3.2510 1.9652 -9.2318 47 1 3.1030 -0.9579 1.2064 48 1 1.3912 0.9843 2.4930 49 1 2.2337 -0.3326 3.4151 50 1 -2.0767 -3.5951 1.8014 51 1 1.6858 -2.6121 2.3384 52 1 0.5875 -2.3555 0.9157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700547250.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:54 Heat of formation + Delta-G solvation = -50.597488 kcal Electronic energy + Delta-G solvation = -29180.059644 eV Core-core repulsion = 25179.933454 eV Total energy + Delta-G solvation = -4000.126190 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.46950 -40.83238 -39.91824 -38.63506 -36.02599 -35.37562 -34.15724 -32.62490 -31.53897 -29.59317 -29.48961 -28.84306 -26.43336 -26.31806 -25.69790 -23.28883 -21.71977 -21.48942 -21.40425 -20.46209 -20.16662 -18.82201 -18.54430 -17.54008 -17.28444 -17.01630 -16.83144 -16.66498 -16.45116 -16.06948 -15.67652 -15.63633 -15.58766 -14.76452 -14.47680 -14.42037 -14.15661 -14.06882 -13.96043 -13.57810 -13.45561 -12.98799 -12.89581 -12.87642 -12.77587 -12.55163 -12.38136 -12.10098 -12.02203 -11.90049 -11.80687 -11.69816 -11.63343 -11.48200 -11.47989 -11.26173 -11.13368 -10.86389 -10.82231 -10.71433 -10.22267 -10.02327 -8.76739 -7.84812 -5.14412 1.46349 1.47105 1.51596 1.54292 1.66997 1.81648 2.48293 2.50222 3.37514 3.53189 3.61997 3.67703 3.74927 3.76459 3.84527 3.95378 4.06035 4.30973 4.37210 4.40189 4.41515 4.46702 4.56968 4.62382 4.67375 4.74359 4.77098 4.87243 4.87784 4.90382 4.93583 5.00638 5.05285 5.11706 5.13497 5.14210 5.16715 5.28054 5.30856 5.31466 5.43039 5.51278 5.52995 5.58830 5.60277 5.67316 5.81899 6.01351 6.50020 6.53684 6.98619 7.15792 7.22903 7.67617 8.68491 9.31906 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025031 B = 0.001804 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.327980 B =15517.289965 C =15877.317228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.186 3.814 3 H 0.081 0.919 4 N -0.705 5.705 5 C 0.512 3.488 6 O -0.574 6.574 7 C 0.105 3.895 8 N -0.718 5.718 9 C 0.511 3.489 10 O -0.574 6.574 11 C -0.129 4.129 12 C -0.077 4.077 13 C -0.114 4.114 14 C -0.128 4.128 15 C -0.123 4.123 16 C -0.119 4.119 17 C -0.128 4.128 18 C 0.123 3.877 19 N -0.630 5.630 20 C -0.213 4.213 21 H 0.078 0.922 22 C -0.058 4.058 23 N -0.944 5.944 24 Si 0.963 3.037 25 H -0.290 1.290 26 H -0.298 1.298 27 H -0.273 1.273 28 C 0.154 3.846 29 H 0.023 0.977 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.414 0.586 33 H 0.113 0.887 34 H 0.101 0.899 35 H 0.415 0.585 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.079 0.921 47 H 0.110 0.890 48 H 0.049 0.951 49 H 0.051 0.949 50 H 0.245 0.755 51 H 0.016 0.984 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.909 8.171 -21.038 27.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.082 3.918 3 H 0.099 0.901 4 N -0.356 5.356 5 C 0.299 3.701 6 O -0.454 6.454 7 C -0.022 4.022 8 N -0.373 5.373 9 C 0.300 3.700 10 O -0.453 6.453 11 C -0.168 4.168 12 C -0.096 4.096 13 C -0.152 4.152 14 C -0.165 4.165 15 C -0.160 4.160 16 C -0.157 4.157 17 C -0.148 4.148 18 C -0.002 4.002 19 N -0.357 5.357 20 C -0.342 4.342 21 H 0.096 0.904 22 C -0.252 4.252 23 N -0.593 5.593 24 Si 0.792 3.208 25 H -0.218 1.218 26 H -0.225 1.225 27 H -0.198 1.198 28 C 0.029 3.971 29 H 0.042 0.958 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.250 0.750 33 H 0.131 0.869 34 H 0.119 0.881 35 H 0.254 0.746 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.098 0.902 47 H 0.127 0.873 48 H 0.067 0.933 49 H 0.069 0.931 50 H 0.054 0.946 51 H 0.034 0.966 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.591 8.102 -21.081 26.888 hybrid contribution -1.403 -0.644 1.056 1.871 sum 13.187 7.459 -20.025 25.111 Atomic orbital electron populations 1.21930 0.95557 1.01796 0.99607 1.20319 0.93314 0.95697 0.82457 0.90077 1.45923 1.65704 1.14817 1.09123 1.20747 0.77188 0.87033 0.85142 1.90664 1.52178 1.17383 1.85168 1.21036 1.04189 0.92772 0.84247 1.45827 1.67644 1.14983 1.08848 1.21307 0.75444 0.89315 0.83957 1.90692 1.49524 1.20865 1.84257 1.21909 1.05422 0.97881 0.91587 1.21524 0.96659 0.97929 0.93518 1.22370 0.94846 1.00703 0.97294 1.22544 0.99781 0.98200 0.95993 1.22366 0.95159 0.97712 1.00808 1.22225 0.97471 0.99598 0.96364 1.23131 0.99650 0.98318 0.93688 1.22541 0.87344 0.95780 0.94564 1.45919 1.04666 1.21727 1.63339 1.19114 0.84816 1.03152 1.27073 0.90420 1.25356 1.01161 0.96741 1.01918 1.69947 1.34542 1.10013 1.44794 0.85310 0.81131 0.76187 0.78123 1.21781 1.22477 1.19798 1.22190 0.89682 0.91549 0.93695 0.95801 0.93467 0.91961 0.74994 0.86943 0.88075 0.74627 0.86906 0.86733 0.92155 0.92058 0.93236 0.91933 0.91256 0.91059 0.91031 0.91480 0.90185 0.87253 0.93272 0.93120 0.94617 0.96612 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.27 8.07 71.98 0.58 -4.69 16 2 C 0.19 5.96 2.76 44.99 0.12 6.08 16 3 H 0.08 2.62 7.58 -2.39 -0.02 2.61 16 4 N -0.70 -18.27 5.08 -442.55 -2.25 -20.52 16 5 C 0.51 13.17 7.86 87.66 0.69 13.86 16 6 O -0.57 -18.23 15.33 -3.02 -0.05 -18.28 16 7 C 0.10 2.15 6.15 85.63 0.53 2.68 16 8 N -0.72 -14.15 5.53 -466.79 -2.58 -16.73 16 9 C 0.51 10.40 7.61 87.66 0.67 11.07 16 10 O -0.57 -15.66 14.78 -3.03 -0.04 -15.71 16 11 C -0.13 -1.70 4.83 29.85 0.14 -1.55 16 12 C -0.08 -1.15 2.55 -10.07 -0.03 -1.18 16 13 C -0.11 -1.89 5.40 31.69 0.17 -1.71 16 14 C -0.13 -1.64 6.91 31.91 0.22 -1.42 16 15 C -0.12 -1.25 6.83 31.67 0.22 -1.03 16 16 C -0.12 -1.26 6.46 31.32 0.20 -1.06 16 17 C -0.13 -4.07 4.24 -10.37 -0.04 -4.12 16 18 C 0.12 4.50 7.85 83.18 0.65 5.15 16 19 N -0.63 -29.62 2.18 -737.98 -1.61 -31.23 16 20 C -0.21 -11.33 9.60 84.03 0.81 -10.52 16 21 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 22 C -0.06 -3.19 5.50 84.86 0.47 -2.72 16 23 N -0.94 -54.27 11.50 21.65 0.25 -54.02 16 24 Si 0.96 45.09 29.55 68.60 2.03 47.12 16 25 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 26 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 27 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 28 C 0.15 6.54 6.41 83.27 0.53 7.07 16 29 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.05 2.20 6.33 -2.39 -0.02 2.18 16 31 H 0.06 2.80 5.95 -2.39 -0.01 2.78 16 32 H 0.41 8.97 8.60 -92.71 -0.80 8.17 16 33 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.42 7.72 7.44 -92.70 -0.69 7.03 16 36 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.11 1.10 8.02 -2.39 -0.02 1.08 16 38 H 0.06 1.14 7.95 -2.39 -0.02 1.12 16 39 H 0.06 0.98 7.77 -2.39 -0.02 0.96 16 40 H 0.05 1.05 7.63 -2.39 -0.02 1.03 16 41 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 45 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.08 0.64 7.67 -2.39 -0.02 0.62 16 47 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 48 H 0.05 1.72 8.12 -2.39 -0.02 1.70 16 49 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 50 H 0.24 13.93 8.31 -92.71 -0.77 13.16 16 51 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 52 H 0.05 2.47 5.72 -2.39 -0.01 2.46 16 Total: -1.00 -68.87 406.92 1.11 -67.76 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: -0.57 Total: 25.69 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 5.93 Total: 15.90 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -6.19 Total: -122.49 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -0.09 Total: -33.98 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -68.87 1.11 -67.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700547250.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.159 kcal (2) G-P(sol) polarization free energy of solvation -68.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds