Wall clock time and date at job start Tue Mar 31 2020 20:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47214 * 2 1 4 4 C 1.50699 * 109.47316 * 120.00173 * 2 1 3 5 5 O 1.21286 * 120.00092 * 93.39922 * 4 2 1 6 6 N 1.34770 * 120.00165 * 273.40504 * 4 2 1 7 7 C 1.47023 * 125.64968 * 174.91233 * 6 4 2 8 8 C 1.54323 * 107.27180 * 178.99272 * 7 6 4 9 9 C 1.55154 * 102.94421 * 337.81285 * 8 7 6 10 10 H 1.09000 * 111.00160 * 277.38535 * 9 8 7 11 11 C 1.53000 * 111.00847 * 153.57303 * 9 8 7 12 12 N 1.46901 * 109.47058 * 66.53670 * 11 9 8 13 13 C 1.46899 * 110.99969 * 199.84994 * 12 11 9 14 14 C 1.46896 * 110.99979 * 75.89449 * 12 11 9 15 15 C 1.50701 * 109.46941 * 190.00046 * 14 12 11 16 16 O 1.21287 * 120.00171 * 0.02562 * 15 14 12 17 17 N 1.34776 * 119.99711 * 180.02562 * 15 14 12 18 18 C 1.37107 * 119.99953 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99668 * 359.97438 * 18 17 15 20 20 C 1.38951 * 120.00044 * 180.02562 * 18 17 15 21 21 N 1.31408 * 119.99887 * 359.71692 * 20 18 17 22 22 Si 1.86797 * 119.99977 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47213 * 179.72427 * 22 20 18 24 24 H 1.48506 * 109.46801 * 299.72074 * 22 20 18 25 25 H 1.48501 * 109.47202 * 59.71979 * 22 20 18 26 26 C 1.47475 * 125.62841 * 354.93915 * 6 4 2 27 27 C 1.53000 * 109.47142 * 240.00393 * 2 1 3 28 28 C 1.53000 * 117.50172 * 128.62529 * 27 2 1 29 29 C 1.52995 * 117.50124 * 59.99695 * 27 2 1 30 30 H 1.08999 * 109.47368 * 63.71117 * 1 2 3 31 31 H 1.09004 * 109.46888 * 183.70443 * 1 2 3 32 32 H 1.08996 * 109.47381 * 303.70847 * 1 2 3 33 33 H 1.09004 * 109.88030 * 59.58069 * 7 6 4 34 34 H 1.08998 * 110.01432 * 298.48841 * 7 6 4 35 35 H 1.08998 * 110.72539 * 219.44195 * 8 7 6 36 36 H 1.09004 * 110.71716 * 96.17231 * 8 7 6 37 37 H 1.09000 * 109.46880 * 306.53524 * 11 9 8 38 38 H 1.09000 * 109.47433 * 186.53918 * 11 9 8 39 39 H 1.08999 * 109.46993 * 290.07521 * 13 12 11 40 40 H 1.08997 * 109.47139 * 50.07817 * 13 12 11 41 41 H 1.09000 * 109.47303 * 170.07805 * 13 12 11 42 42 H 1.08998 * 109.47270 * 69.99954 * 14 12 11 43 43 H 1.08995 * 109.47132 * 309.99950 * 14 12 11 44 44 H 0.96999 * 120.00166 * 359.97438 * 17 15 14 45 45 H 0.97008 * 120.00506 * 0.28415 * 21 20 18 46 46 H 1.09000 * 110.34732 * 85.23366 * 26 6 4 47 47 H 1.09000 * 110.40040 * 322.89445 * 26 6 4 48 48 H 1.09008 * 115.54771 * 274.33053 * 27 2 1 49 49 H 1.09001 * 117.49692 * 359.97438 * 28 27 2 50 50 H 1.09001 * 117.50295 * 145.01976 * 28 27 2 51 51 H 1.09008 * 117.50001 * 214.97947 * 29 27 2 52 52 H 1.08998 * 117.49996 * 0.02562 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.2932 -1.8940 1.1833 6 7 2.1917 -0.0307 2.3832 7 6 2.5701 -0.6159 3.6778 8 6 2.6553 0.5405 4.6960 9 6 2.8728 1.7834 3.7930 10 1 3.9232 1.8907 3.5226 11 6 2.3518 3.0520 4.4712 12 7 3.1701 3.3457 5.6553 13 6 2.4570 4.2367 6.5802 14 6 4.4678 3.9161 5.2701 15 6 5.3685 3.9754 6.4769 16 8 4.9689 3.5808 7.5519 17 7 6.6181 4.4669 6.3615 18 6 7.4378 4.5203 7.4592 19 1 7.0820 4.1690 8.4164 20 6 8.7260 5.0276 7.3404 21 7 9.1605 5.4509 6.1747 22 14 9.8430 5.0997 8.8359 23 1 11.1566 5.6716 8.4454 24 1 9.2206 5.9556 9.8777 25 1 10.0397 3.7295 9.3734 26 6 2.0146 1.4233 2.5547 27 6 2.0400 -0.7212 -1.2493 28 6 3.0742 0.0052 -2.1117 29 6 1.6357 -0.1494 -2.6096 30 1 -0.3634 0.4551 -0.9214 31 1 -0.3633 -1.0256 0.0664 32 1 -0.3634 0.5703 0.8548 33 1 3.5393 -1.1075 3.5932 34 1 1.8162 -1.3357 3.9965 35 1 3.5010 0.4002 5.3692 36 1 1.7251 0.6296 5.2571 37 1 1.3153 2.9028 4.7737 38 1 2.4098 3.8872 3.7732 39 1 2.3798 5.2308 6.1400 40 1 1.4578 3.8430 6.7661 41 1 3.0044 4.2974 7.5209 42 1 4.3202 4.9220 4.8771 43 1 4.9268 3.2906 4.5045 44 1 6.9379 4.7822 5.5017 45 1 8.5806 5.4131 5.3980 46 1 0.9662 1.6584 2.7384 47 1 2.3754 1.9564 1.6750 48 1 2.1267 -1.8045 -1.1643 49 1 3.3909 0.9971 -1.7892 50 1 3.8416 -0.6000 -2.5942 51 1 1.4568 -0.8565 -3.4197 52 1 1.0067 0.7407 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713748736.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:25 Heat of formation + Delta-G solvation = -42.887780 kcal Electronic energy + Delta-G solvation = -29572.450809 eV Core-core repulsion = 25572.658938 eV Total energy + Delta-G solvation = -3999.791872 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.56914 -39.02000 -38.24888 -37.28111 -36.16279 -34.22138 -32.90373 -31.69673 -31.12419 -29.68572 -28.03805 -26.57983 -25.53835 -24.45023 -23.34887 -22.61406 -22.27264 -20.99683 -20.35455 -19.42422 -19.15147 -17.89648 -17.60178 -16.94866 -16.30141 -16.08913 -15.44985 -15.10791 -14.86500 -14.75666 -14.52641 -14.26857 -13.92398 -13.80596 -13.66659 -13.57207 -13.38334 -13.27262 -12.77769 -12.61548 -12.43981 -12.39440 -12.20857 -11.80481 -11.75792 -11.62105 -11.39628 -11.25826 -11.20869 -11.10195 -10.98844 -10.90647 -10.70366 -10.60667 -10.37814 -10.21520 -9.88554 -9.86441 -9.52408 -8.85299 -8.53523 -8.06323 -7.94018 -6.76139 -3.89398 2.42432 2.70986 3.30144 3.34215 3.45109 3.54312 3.80368 3.83948 4.09689 4.24150 4.26974 4.47858 4.53184 4.60461 4.61772 4.73123 4.82666 4.92451 4.99330 5.04078 5.06693 5.12311 5.19207 5.24463 5.26860 5.33453 5.35145 5.39859 5.45827 5.50753 5.56122 5.59426 5.64827 5.71663 5.73996 5.77266 5.79483 5.81391 5.88723 5.94614 6.01717 6.02219 6.19297 6.21031 6.46825 7.13112 7.26141 7.31310 7.79927 7.96492 8.07207 8.59351 8.79690 9.46769 9.87701 10.67256 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015089 B = 0.002156 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.194965 B =12981.666711 C =13765.060689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.076 4.076 3 H 0.090 0.910 4 C 0.536 3.464 5 O -0.540 6.540 6 N -0.617 5.617 7 C 0.103 3.897 8 C -0.111 4.111 9 C -0.096 4.096 10 H 0.087 0.913 11 C 0.065 3.935 12 N -0.515 5.515 13 C 0.024 3.976 14 C 0.044 3.956 15 C 0.447 3.553 16 O -0.571 6.571 17 N -0.577 5.577 18 C -0.381 4.381 19 H 0.099 0.901 20 C -0.010 4.010 21 N -0.901 5.901 22 Si 1.091 2.909 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.104 3.896 27 C -0.141 4.141 28 C -0.180 4.180 29 C -0.176 4.176 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.036 0.964 39 H 0.015 0.985 40 H 0.059 0.941 41 H 0.096 0.904 42 H 0.046 0.954 43 H 0.086 0.914 44 H 0.375 0.625 45 H 0.261 0.739 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.118 0.882 49 H 0.094 0.906 50 H 0.095 0.905 51 H 0.095 0.905 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.019 -6.133 -15.158 24.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.097 4.097 3 H 0.108 0.892 4 C 0.324 3.676 5 O -0.417 6.417 6 N -0.351 5.351 7 C -0.019 4.019 8 C -0.149 4.149 9 C -0.116 4.116 10 H 0.105 0.895 11 C -0.064 4.064 12 N -0.239 5.239 13 C -0.124 4.124 14 C -0.087 4.087 15 C 0.232 3.768 16 O -0.454 6.454 17 N -0.215 5.215 18 C -0.510 4.510 19 H 0.117 0.883 20 C -0.212 4.212 21 N -0.541 5.541 22 Si 0.917 3.083 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.020 4.020 27 C -0.160 4.160 28 C -0.217 4.217 29 C -0.213 4.213 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.055 0.945 39 H 0.034 0.966 40 H 0.077 0.923 41 H 0.115 0.885 42 H 0.064 0.936 43 H 0.104 0.896 44 H 0.208 0.792 45 H 0.072 0.928 46 H 0.089 0.911 47 H 0.094 0.906 48 H 0.136 0.864 49 H 0.112 0.888 50 H 0.114 0.886 51 H 0.114 0.886 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.536 -7.086 -13.729 22.630 hybrid contribution -1.451 0.606 -1.554 2.211 sum -17.987 -6.479 -15.283 24.476 Atomic orbital electron populations 1.21675 0.92150 1.03016 1.02598 1.20818 0.97649 0.99672 0.91590 0.89184 1.20197 0.77230 0.86939 0.83198 1.90686 1.50833 1.15886 1.84273 1.48529 1.68811 1.08748 1.09028 1.22051 1.00705 0.96754 0.82367 1.22555 1.03843 0.91983 0.96545 1.22360 1.00120 0.95352 0.93764 0.89511 1.22052 0.97196 0.95362 0.91750 1.61511 1.02489 1.46232 1.13663 1.22544 0.98348 0.92750 0.98730 1.21936 0.91011 0.98230 0.97530 1.19652 0.83033 0.84219 0.89866 1.90483 1.74414 1.51779 1.28721 1.41952 1.12085 1.56198 1.11296 1.20516 0.96548 1.43103 0.90852 0.88331 1.26498 0.96208 0.94773 1.03745 1.70905 1.38642 1.44699 0.99833 0.83140 0.75442 0.76964 0.72794 1.20431 1.21037 1.20981 1.22383 1.00138 0.80660 0.98774 1.22146 1.03746 1.00284 0.89803 1.23057 0.92644 1.01971 1.03982 1.22961 0.98132 1.03195 0.96961 0.91155 0.91805 0.92110 0.91400 0.91597 0.89007 0.90515 0.90511 0.94546 0.96639 0.92265 0.88532 0.93587 0.89574 0.79249 0.92798 0.91057 0.90623 0.86387 0.88757 0.88636 0.88623 0.88691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.07 37.16 0.34 -0.60 16 2 C -0.08 -0.65 2.45 -91.77 -0.23 -0.87 16 3 H 0.09 0.65 6.38 -51.93 -0.33 0.31 16 4 C 0.54 6.37 6.94 -10.99 -0.08 6.30 16 5 O -0.54 -8.47 16.16 5.55 0.09 -8.38 16 6 N -0.62 -6.61 3.33 -170.48 -0.57 -7.18 16 7 C 0.10 1.16 6.87 -3.06 -0.02 1.14 16 8 C -0.11 -1.20 6.25 -24.90 -0.16 -1.36 16 9 C -0.10 -0.97 3.07 -88.47 -0.27 -1.24 16 10 H 0.09 0.99 6.82 -51.93 -0.35 0.63 16 11 C 0.07 0.69 4.45 -3.82 -0.02 0.67 16 12 N -0.52 -7.66 4.25 -244.38 -1.04 -8.70 16 13 C 0.02 0.36 9.19 60.06 0.55 0.91 16 14 C 0.04 0.74 5.27 -4.98 -0.03 0.71 16 15 C 0.45 10.19 7.54 -10.99 -0.08 10.10 16 16 O -0.57 -14.95 13.88 5.55 0.08 -14.87 16 17 N -0.58 -14.24 5.28 -10.96 -0.06 -14.30 16 18 C -0.38 -10.57 9.68 -14.93 -0.14 -10.71 16 19 H 0.10 2.89 7.16 -52.49 -0.38 2.52 16 20 C -0.01 -0.27 5.50 -17.47 -0.10 -0.36 16 21 N -0.90 -25.10 13.68 55.50 0.76 -24.34 16 22 Si 1.09 24.13 29.92 -169.99 -5.09 19.05 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 C 0.10 0.86 6.08 -2.50 -0.02 0.84 16 27 C -0.14 -1.25 4.97 -90.62 -0.45 -1.70 16 28 C -0.18 -1.39 10.18 -26.73 -0.27 -1.66 16 29 C -0.18 -1.17 9.69 -26.73 -0.26 -1.43 16 30 H 0.07 0.38 7.16 -51.93 -0.37 0.00 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.08 0.78 8.01 -51.93 -0.42 0.37 16 37 H 0.08 0.71 7.70 -51.93 -0.40 0.31 16 38 H 0.04 0.35 8.00 -51.93 -0.42 -0.07 16 39 H 0.02 0.21 8.06 -51.93 -0.42 -0.21 16 40 H 0.06 0.73 7.83 -51.93 -0.41 0.32 16 41 H 0.10 1.81 6.01 -51.93 -0.31 1.49 16 42 H 0.05 0.70 8.06 -51.93 -0.42 0.29 16 43 H 0.09 1.30 6.65 -51.93 -0.35 0.95 16 44 H 0.37 8.56 6.73 -40.82 -0.27 8.28 16 45 H 0.26 6.96 6.78 -40.82 -0.28 6.68 16 46 H 0.07 0.49 8.04 -51.93 -0.42 0.07 16 47 H 0.08 0.53 6.90 -51.93 -0.36 0.17 16 48 H 0.12 1.27 7.34 -51.92 -0.38 0.89 16 49 H 0.09 0.68 8.05 -51.93 -0.42 0.26 16 50 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 52 H 0.09 0.53 7.59 -51.93 -0.39 0.14 16 LS Contribution 411.29 15.07 6.20 6.20 Total: -1.00 -33.79 411.29 -9.69 -43.48 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -8.84 Total: 8.31 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -1.22 Total: 0.73 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.91 Total: -54.51 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: 0.17 Total: -23.25 kcal Atomic # 14 Polarization: 24.13 SS G_CDS: -5.09 Total: 19.05 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.79 -9.69 -43.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713748736.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.594 kcal (2) G-P(sol) polarization free energy of solvation -33.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds