Wall clock time and date at job start Tue Mar 31 2020 20:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47240 * 2 1 4 4 C 1.50699 * 109.47329 * 239.99510 * 2 1 3 5 5 O 1.21281 * 119.99606 * 267.15797 * 4 2 1 6 6 N 1.34775 * 119.99932 * 87.16050 * 4 2 1 7 7 C 1.47013 * 125.64864 * 354.86483 * 6 4 2 8 8 C 1.54331 * 107.40182 * 178.98333 * 7 6 4 9 9 C 1.55158 * 102.94085 * 337.73204 * 8 7 6 10 10 H 1.09002 * 111.00540 * 277.42961 * 9 8 7 11 11 C 1.52993 * 111.00484 * 153.61401 * 9 8 7 12 12 N 1.46903 * 109.47111 * 66.45321 * 11 9 8 13 13 C 1.46902 * 110.99893 * 66.04878 * 12 11 9 14 14 C 1.46903 * 110.99905 * 190.00065 * 12 11 9 15 15 C 1.50697 * 109.47061 * 170.00188 * 14 12 11 16 16 O 1.21298 * 119.99934 * 359.97438 * 15 14 12 17 17 N 1.34781 * 120.00262 * 180.02562 * 15 14 12 18 18 C 1.37094 * 119.99886 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00359 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99705 * 179.97438 * 18 17 15 21 21 N 1.31410 * 120.00019 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00034 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46971 * 60.00284 * 22 20 18 24 24 H 1.48505 * 109.47476 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47322 * 300.00187 * 22 20 18 26 26 C 1.47738 * 125.81743 * 174.76715 * 6 4 2 27 27 C 1.53000 * 109.46692 * 119.99315 * 2 1 3 28 28 C 1.52997 * 117.49933 * 248.74620 * 27 2 1 29 29 C 1.53001 * 117.49638 * 180.08823 * 27 2 1 30 30 H 1.09006 * 109.46746 * 65.80381 * 1 2 3 31 31 H 1.08996 * 109.47369 * 185.80346 * 1 2 3 32 32 H 1.09001 * 109.47656 * 305.80545 * 1 2 3 33 33 H 1.08999 * 109.88329 * 59.49060 * 7 6 4 34 34 H 1.09003 * 109.88871 * 298.47950 * 7 6 4 35 35 H 1.08994 * 110.72222 * 96.09631 * 8 7 6 36 36 H 1.08994 * 110.71795 * 219.36950 * 8 7 6 37 37 H 1.08998 * 109.47197 * 186.45268 * 11 9 8 38 38 H 1.09000 * 109.47075 * 306.45310 * 11 9 8 39 39 H 1.08989 * 109.47337 * 59.99986 * 13 12 11 40 40 H 1.08999 * 109.46876 * 179.97438 * 13 12 11 41 41 H 1.09000 * 109.46851 * 299.99922 * 13 12 11 42 42 H 1.08997 * 109.46976 * 290.00062 * 14 12 11 43 43 H 1.08993 * 109.47218 * 50.00003 * 14 12 11 44 44 H 0.97000 * 119.99208 * 359.97438 * 17 15 14 45 45 H 0.97003 * 120.00357 * 179.97438 * 21 20 18 46 46 H 1.08997 * 110.28853 * 85.25498 * 26 6 4 47 47 H 1.09005 * 110.37698 * 322.98221 * 26 6 4 48 48 H 1.08999 * 115.55144 * 34.41843 * 27 2 1 49 49 H 1.08997 * 117.50092 * 0.02562 * 28 27 2 50 50 H 1.08999 * 117.50138 * 145.02447 * 28 27 2 51 51 H 1.09005 * 117.49951 * 214.98026 * 29 27 2 52 52 H 1.09005 * 117.50215 * 0.02562 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.2836 -1.8962 -1.1858 6 7 2.2025 -0.0283 -2.3802 7 6 1.8387 1.3784 -2.6037 8 6 2.2383 1.7341 -4.0513 9 6 3.3227 0.6751 -4.3826 10 1 4.2958 0.9781 -3.9961 11 6 3.3914 0.4130 -5.8884 12 7 3.8727 1.6199 -6.5740 13 6 5.2642 1.9144 -6.2067 14 6 3.7286 1.4909 -8.0302 15 6 3.9970 2.8231 -8.6815 16 8 4.2800 3.7855 -7.9996 17 7 3.9216 2.9455 -10.0216 18 6 4.1653 4.1575 -10.6140 19 1 4.4172 5.0144 -10.0069 20 6 4.0881 4.2836 -11.9956 21 7 3.7820 3.2408 -12.7344 22 14 4.4193 5.9352 -12.8028 23 1 5.7999 6.3764 -12.4789 24 1 4.2746 5.8047 -14.2750 25 1 3.4477 6.9375 -12.2963 26 6 2.7868 -0.5659 -3.6261 27 6 2.0399 -0.7211 1.2494 28 6 2.7391 0.1233 2.3165 29 6 3.5549 -0.8261 1.4355 30 1 -0.3633 0.4212 -0.9374 31 1 -0.3634 -1.0223 0.1039 32 1 -0.3634 0.6012 0.8334 33 1 2.3773 2.0165 -1.9031 34 1 0.7644 1.5089 -2.4730 35 1 1.3851 1.6354 -4.7223 36 1 2.6543 2.7404 -4.1003 37 1 4.0760 -0.4126 -6.0827 38 1 2.3987 0.1565 -6.2582 39 1 5.8999 1.0753 -6.4888 40 1 5.5954 2.8122 -6.7285 41 1 5.3298 2.0742 -5.1304 42 1 4.4411 0.7546 -8.4020 43 1 2.7151 1.1679 -8.2678 44 1 3.6949 2.1759 -10.5668 45 1 3.7277 3.3288 -13.6989 46 1 2.0209 -1.0686 -4.2165 47 1 3.6021 -1.2523 -3.3976 48 1 1.4317 -1.5593 1.5895 49 1 2.8356 1.1926 2.1288 50 1 2.5913 -0.1595 3.3587 51 1 3.9434 -1.7333 1.8985 52 1 4.1884 -0.3811 0.6681 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713748738.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:35 Heat of formation + Delta-G solvation = -42.516034 kcal Electronic energy + Delta-G solvation = -29255.962887 eV Core-core repulsion = 25256.187135 eV Total energy + Delta-G solvation = -3999.775752 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.57244 -38.92828 -38.18194 -37.10320 -36.05720 -33.88779 -33.05566 -31.65982 -31.22865 -29.63455 -27.91013 -26.77775 -25.26430 -24.59001 -23.34126 -22.66288 -22.27201 -21.23063 -20.12840 -19.14121 -19.02557 -17.84341 -17.51685 -16.74102 -16.08614 -15.69334 -15.44684 -15.24686 -14.99311 -14.82693 -14.63620 -14.38528 -13.98204 -13.70594 -13.54571 -13.39387 -13.12210 -13.08432 -12.81354 -12.66228 -12.33663 -12.12323 -12.08542 -11.87155 -11.74242 -11.56839 -11.47064 -11.34481 -11.25344 -11.11371 -10.99435 -10.88434 -10.71078 -10.58104 -10.50014 -10.44882 -10.21946 -9.78982 -9.47279 -8.84472 -8.45448 -7.98327 -7.85783 -6.42138 -3.82988 2.43370 2.68088 3.19257 3.25168 3.29221 3.49766 3.88100 3.91546 4.14695 4.18731 4.29203 4.44883 4.50151 4.59038 4.70311 4.79533 4.82883 4.90029 5.00042 5.06694 5.13000 5.15917 5.23573 5.27223 5.30950 5.35334 5.39612 5.45983 5.51673 5.56376 5.59883 5.67197 5.69628 5.73105 5.75341 5.78809 5.82448 5.90691 5.94691 5.99539 6.01354 6.12190 6.20823 6.27966 6.54932 7.25315 7.30276 7.37832 7.54389 7.97633 8.05734 8.61483 9.17610 9.54189 10.06069 10.75491 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.030417 B = 0.001753 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.303380 B =15971.723300 C =16073.753639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.076 4.076 3 H 0.091 0.909 4 C 0.534 3.466 5 O -0.537 6.537 6 N -0.620 5.620 7 C 0.095 3.905 8 C -0.112 4.112 9 C -0.095 4.095 10 H 0.086 0.914 11 C 0.065 3.935 12 N -0.515 5.515 13 C 0.020 3.980 14 C 0.046 3.954 15 C 0.444 3.556 16 O -0.578 6.578 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.112 3.888 27 C -0.134 4.134 28 C -0.179 4.179 29 C -0.170 4.170 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.034 0.966 38 H 0.076 0.924 39 H 0.013 0.987 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.047 0.953 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.110 0.890 49 H 0.094 0.906 50 H 0.095 0.905 51 H 0.095 0.905 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.938 -8.120 23.842 25.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.098 4.098 3 H 0.109 0.891 4 C 0.323 3.677 5 O -0.413 6.413 6 N -0.354 5.354 7 C -0.027 4.027 8 C -0.150 4.150 9 C -0.114 4.114 10 H 0.104 0.896 11 C -0.064 4.064 12 N -0.238 5.238 13 C -0.127 4.127 14 C -0.086 4.086 15 C 0.230 3.770 16 O -0.462 6.462 17 N -0.201 5.201 18 C -0.429 4.429 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.011 4.011 27 C -0.152 4.152 28 C -0.216 4.216 29 C -0.207 4.207 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.032 0.968 40 H 0.114 0.886 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.106 0.894 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.094 0.906 48 H 0.128 0.872 49 H 0.113 0.887 50 H 0.114 0.886 51 H 0.114 0.886 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.938 -7.770 24.332 26.015 hybrid contribution 0.514 -0.357 -1.199 1.353 sum -4.424 -8.127 23.132 24.915 Atomic orbital electron populations 1.21693 0.92149 1.03072 1.02657 1.20871 0.97850 0.99646 0.91384 0.89091 1.20295 0.77478 0.86925 0.83044 1.90692 1.51068 1.15139 1.84398 1.48628 1.62179 1.12890 1.11745 1.22203 1.00142 0.81771 0.98625 1.22558 0.98885 1.00318 0.93265 1.22343 0.99623 0.94518 0.94955 0.89597 1.22036 1.00574 0.91328 0.92467 1.61546 1.22048 1.34204 1.06047 1.22571 0.87174 1.01806 1.01184 1.21861 1.01822 0.96974 0.87906 1.19730 0.84684 0.89700 0.82914 1.90480 1.53114 1.39980 1.62642 1.41867 1.61216 1.12159 1.04874 1.19640 1.44262 0.88816 0.90161 0.87976 1.25256 0.97346 0.99021 0.96316 1.69602 1.48552 1.29780 1.06394 0.85924 0.79105 0.81576 0.77635 1.19954 1.21003 1.19902 1.22273 0.97973 0.96273 0.84584 1.22004 0.95774 1.01616 0.95822 1.23089 1.04597 0.97558 0.96328 1.22874 0.93626 1.01529 1.02637 0.92016 0.91770 0.91137 0.91544 0.91377 0.90193 0.89045 0.94771 0.90538 0.96832 0.88617 0.92172 0.93515 0.89442 0.77509 0.91837 0.91293 0.90626 0.87232 0.88745 0.88605 0.88640 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.16 37.16 0.34 -0.59 16 2 C -0.08 -0.62 2.37 -91.77 -0.22 -0.84 16 3 H 0.09 0.63 6.95 -51.93 -0.36 0.27 16 4 C 0.53 6.02 6.61 -10.99 -0.07 5.95 16 5 O -0.54 -7.99 16.47 5.56 0.09 -7.90 16 6 N -0.62 -6.30 3.34 -170.27 -0.57 -6.87 16 7 C 0.10 0.78 6.29 -3.07 -0.02 0.76 16 8 C -0.11 -1.08 6.25 -24.89 -0.16 -1.24 16 9 C -0.09 -0.97 2.90 -88.48 -0.26 -1.22 16 10 H 0.09 0.92 6.54 -51.93 -0.34 0.58 16 11 C 0.06 0.75 4.41 -3.83 -0.02 0.74 16 12 N -0.51 -7.91 4.32 -244.38 -1.06 -8.97 16 13 C 0.02 0.31 8.98 60.07 0.54 0.85 16 14 C 0.05 0.78 5.45 -4.98 -0.03 0.76 16 15 C 0.44 10.16 7.47 -10.99 -0.08 10.08 16 16 O -0.58 -15.02 13.91 5.54 0.08 -14.95 16 17 N -0.56 -14.03 5.29 -10.96 -0.06 -14.09 16 18 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 19 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.29 13.05 55.50 0.72 -23.56 16 22 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 C 0.11 1.15 6.38 -2.36 -0.02 1.13 16 27 C -0.13 -1.10 4.61 -90.62 -0.42 -1.52 16 28 C -0.18 -1.19 10.18 -26.70 -0.27 -1.46 16 29 C -0.17 -1.44 9.72 -26.69 -0.26 -1.70 16 30 H 0.06 0.40 7.36 -51.93 -0.38 0.02 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.48 7.67 -51.93 -0.40 0.08 16 34 H 0.07 0.48 7.36 -51.93 -0.38 0.10 16 35 H 0.08 0.80 8.01 -51.93 -0.42 0.38 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 38 H 0.08 0.84 7.90 -51.93 -0.41 0.43 16 39 H 0.01 0.19 8.14 -51.94 -0.42 -0.23 16 40 H 0.10 1.82 5.82 -51.93 -0.30 1.52 16 41 H 0.06 0.80 6.45 -51.93 -0.33 0.47 16 42 H 0.05 0.75 8.12 -51.93 -0.42 0.32 16 43 H 0.09 1.35 7.93 -51.93 -0.41 0.94 16 44 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.07 0.70 8.04 -51.93 -0.42 0.28 16 47 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 48 H 0.11 0.92 8.11 -51.93 -0.42 0.50 16 49 H 0.09 0.56 8.05 -51.93 -0.42 0.14 16 50 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 51 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 52 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 414.09 15.07 6.24 6.24 Total: -1.00 -32.09 414.09 -9.80 -41.89 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -9.05 Total: 8.56 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -1.17 Total: 3.84 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.96 Total: -53.49 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: 0.17 Total: -22.85 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.09 -9.80 -41.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713748738.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.625 kcal (2) G-P(sol) polarization free energy of solvation -32.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds