Wall clock time and date at job start Tue Mar 31 2020 20:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47240 * 2 1 4 4 C 1.50699 * 109.47329 * 239.99510 * 2 1 3 5 5 O 1.21281 * 119.99606 * 267.15797 * 4 2 1 6 6 N 1.34775 * 119.99932 * 87.16050 * 4 2 1 7 7 C 1.47013 * 125.64864 * 354.86483 * 6 4 2 8 8 C 1.54331 * 107.40182 * 178.98333 * 7 6 4 9 9 C 1.55158 * 102.94085 * 337.73204 * 8 7 6 10 10 H 1.09002 * 111.00540 * 277.42961 * 9 8 7 11 11 C 1.52993 * 111.00484 * 153.61401 * 9 8 7 12 12 N 1.46903 * 109.47111 * 66.45321 * 11 9 8 13 13 C 1.46902 * 110.99893 * 66.04878 * 12 11 9 14 14 C 1.46903 * 110.99905 * 190.00065 * 12 11 9 15 15 C 1.50697 * 109.47061 * 170.00188 * 14 12 11 16 16 O 1.21298 * 119.99934 * 359.97438 * 15 14 12 17 17 N 1.34781 * 120.00262 * 180.02562 * 15 14 12 18 18 C 1.37094 * 119.99886 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00359 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99705 * 179.97438 * 18 17 15 21 21 N 1.31410 * 120.00019 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00034 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46971 * 60.00284 * 22 20 18 24 24 H 1.48505 * 109.47476 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47322 * 300.00187 * 22 20 18 26 26 C 1.47738 * 125.81743 * 174.76715 * 6 4 2 27 27 C 1.53000 * 109.46692 * 119.99315 * 2 1 3 28 28 C 1.52997 * 117.49933 * 248.74620 * 27 2 1 29 29 C 1.53001 * 117.49638 * 180.08823 * 27 2 1 30 30 H 1.09006 * 109.46746 * 65.80381 * 1 2 3 31 31 H 1.08996 * 109.47369 * 185.80346 * 1 2 3 32 32 H 1.09001 * 109.47656 * 305.80545 * 1 2 3 33 33 H 1.08999 * 109.88329 * 59.49060 * 7 6 4 34 34 H 1.09003 * 109.88871 * 298.47950 * 7 6 4 35 35 H 1.08994 * 110.72222 * 96.09631 * 8 7 6 36 36 H 1.08994 * 110.71795 * 219.36950 * 8 7 6 37 37 H 1.08998 * 109.47197 * 186.45268 * 11 9 8 38 38 H 1.09000 * 109.47075 * 306.45310 * 11 9 8 39 39 H 1.08989 * 109.47337 * 59.99986 * 13 12 11 40 40 H 1.08999 * 109.46876 * 179.97438 * 13 12 11 41 41 H 1.09000 * 109.46851 * 299.99922 * 13 12 11 42 42 H 1.08997 * 109.46976 * 290.00062 * 14 12 11 43 43 H 1.08993 * 109.47218 * 50.00003 * 14 12 11 44 44 H 0.97000 * 119.99208 * 359.97438 * 17 15 14 45 45 H 0.97003 * 120.00357 * 179.97438 * 21 20 18 46 46 H 1.08997 * 110.28853 * 85.25498 * 26 6 4 47 47 H 1.09005 * 110.37698 * 322.98221 * 26 6 4 48 48 H 1.08999 * 115.55144 * 34.41843 * 27 2 1 49 49 H 1.08997 * 117.50092 * 0.02562 * 28 27 2 50 50 H 1.08999 * 117.50138 * 145.02447 * 28 27 2 51 51 H 1.09005 * 117.49951 * 214.98026 * 29 27 2 52 52 H 1.09005 * 117.50215 * 0.02562 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.2836 -1.8962 -1.1858 6 7 2.2025 -0.0283 -2.3802 7 6 1.8387 1.3784 -2.6037 8 6 2.2383 1.7341 -4.0513 9 6 3.3227 0.6751 -4.3826 10 1 4.2958 0.9781 -3.9961 11 6 3.3914 0.4130 -5.8884 12 7 3.8727 1.6199 -6.5740 13 6 5.2642 1.9144 -6.2067 14 6 3.7286 1.4909 -8.0302 15 6 3.9970 2.8231 -8.6815 16 8 4.2800 3.7855 -7.9996 17 7 3.9216 2.9455 -10.0216 18 6 4.1653 4.1575 -10.6140 19 1 4.4172 5.0144 -10.0069 20 6 4.0881 4.2836 -11.9956 21 7 3.7820 3.2408 -12.7344 22 14 4.4193 5.9352 -12.8028 23 1 5.7999 6.3764 -12.4789 24 1 4.2746 5.8047 -14.2750 25 1 3.4477 6.9375 -12.2963 26 6 2.7868 -0.5659 -3.6261 27 6 2.0399 -0.7211 1.2494 28 6 2.7391 0.1233 2.3165 29 6 3.5549 -0.8261 1.4355 30 1 -0.3633 0.4212 -0.9374 31 1 -0.3634 -1.0223 0.1039 32 1 -0.3634 0.6012 0.8334 33 1 2.3773 2.0165 -1.9031 34 1 0.7644 1.5089 -2.4730 35 1 1.3851 1.6354 -4.7223 36 1 2.6543 2.7404 -4.1003 37 1 4.0760 -0.4126 -6.0827 38 1 2.3987 0.1565 -6.2582 39 1 5.8999 1.0753 -6.4888 40 1 5.5954 2.8122 -6.7285 41 1 5.3298 2.0742 -5.1304 42 1 4.4411 0.7546 -8.4020 43 1 2.7151 1.1679 -8.2678 44 1 3.6949 2.1759 -10.5668 45 1 3.7277 3.3288 -13.6989 46 1 2.0209 -1.0686 -4.2165 47 1 3.6021 -1.2523 -3.3976 48 1 1.4317 -1.5593 1.5895 49 1 2.8356 1.1926 2.1288 50 1 2.5913 -0.1595 3.3587 51 1 3.9434 -1.7333 1.8985 52 1 4.1884 -0.3811 0.6681 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713748738.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:34 Heat of formation + Delta-G solvation = -63.164236 kcal Electronic energy + Delta-G solvation = -29256.858260 eV Core-core repulsion = 25256.187135 eV Total energy + Delta-G solvation = -4000.671125 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.38693 -40.37084 -39.28824 -37.95495 -37.25766 -35.82461 -33.82686 -33.24388 -32.45161 -30.45125 -29.35151 -27.80380 -26.68199 -25.68484 -24.21241 -23.34737 -23.24767 -21.94948 -21.03130 -20.90774 -19.82438 -19.77179 -18.29192 -17.93808 -17.25838 -16.63532 -16.59803 -16.46381 -16.35280 -15.96102 -15.66453 -15.45700 -15.22669 -15.14584 -14.83148 -14.54546 -13.93251 -13.87111 -13.72441 -13.58869 -13.48023 -13.40859 -13.08590 -13.03062 -12.73096 -12.71426 -12.58862 -12.42242 -12.40268 -12.35152 -12.12530 -12.07924 -11.96616 -11.80583 -11.46008 -11.40907 -11.37206 -11.10126 -10.59740 -10.22995 -9.96731 -9.66244 -9.16032 -8.43671 -5.91940 1.41251 1.42969 1.53575 1.60045 1.91195 2.09866 2.30293 2.76594 2.88254 3.23493 3.41201 3.54171 3.57114 3.66903 3.80236 3.91082 3.91970 4.15033 4.19274 4.25099 4.31461 4.33175 4.36441 4.41861 4.45368 4.50931 4.54704 4.57272 4.63169 4.71861 4.73754 4.76782 4.79593 4.86716 4.90566 4.93000 5.02225 5.04246 5.17020 5.20033 5.22569 5.23686 5.31525 5.33342 5.41637 5.43766 5.91086 6.09854 6.23553 6.51594 6.64259 7.14129 7.16381 7.60754 8.16635 8.73449 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.030417 B = 0.001753 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.303380 B =15971.723300 C =16073.753639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.071 4.071 3 H 0.108 0.892 4 C 0.528 3.472 5 O -0.581 6.581 6 N -0.621 5.621 7 C 0.098 3.902 8 C -0.110 4.110 9 C -0.086 4.086 10 H 0.083 0.917 11 C 0.068 3.932 12 N -0.527 5.527 13 C 0.026 3.974 14 C 0.057 3.943 15 C 0.443 3.557 16 O -0.612 6.612 17 N -0.577 5.577 18 C -0.331 4.331 19 H 0.080 0.920 20 C -0.014 4.014 21 N -0.922 5.922 22 Si 0.992 3.008 23 H -0.273 1.273 24 H -0.272 1.272 25 H -0.272 1.272 26 C 0.114 3.886 27 C -0.145 4.145 28 C -0.155 4.155 29 C -0.189 4.189 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.044 0.956 38 H 0.088 0.912 39 H 0.025 0.975 40 H 0.055 0.945 41 H 0.079 0.921 42 H 0.064 0.936 43 H 0.110 0.890 44 H 0.395 0.605 45 H 0.276 0.724 46 H 0.072 0.928 47 H 0.064 0.936 48 H 0.103 0.897 49 H 0.107 0.893 50 H 0.109 0.891 51 H 0.091 0.909 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.837 -7.763 24.842 26.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.092 4.092 3 H 0.126 0.874 4 C 0.319 3.681 5 O -0.461 6.461 6 N -0.354 5.354 7 C -0.024 4.024 8 C -0.148 4.148 9 C -0.106 4.106 10 H 0.101 0.899 11 C -0.060 4.060 12 N -0.251 5.251 13 C -0.121 4.121 14 C -0.074 4.074 15 C 0.230 3.770 16 O -0.498 6.498 17 N -0.214 5.214 18 C -0.460 4.460 19 H 0.098 0.902 20 C -0.214 4.214 21 N -0.563 5.563 22 Si 0.815 3.185 23 H -0.198 1.198 24 H -0.197 1.197 25 H -0.197 1.197 26 C -0.009 4.009 27 C -0.163 4.163 28 C -0.192 4.192 29 C -0.226 4.226 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.062 0.938 38 H 0.106 0.894 39 H 0.043 0.957 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.128 0.872 44 H 0.229 0.771 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.121 0.879 49 H 0.125 0.875 50 H 0.127 0.873 51 H 0.110 0.890 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.848 -7.413 25.334 27.036 hybrid contribution 0.813 -0.505 -1.454 1.740 sum -5.036 -7.918 23.880 25.658 Atomic orbital electron populations 1.21697 0.90889 1.02861 1.03779 1.20916 0.98771 0.99891 0.89624 0.87385 1.20912 0.76738 0.86566 0.83931 1.90667 1.53152 1.17141 1.85138 1.48726 1.61553 1.13665 1.11451 1.22291 1.01473 0.80680 0.97937 1.22506 0.98477 0.99512 0.94268 1.22217 0.99711 0.94693 0.93950 0.89921 1.22084 1.01172 0.89927 0.92827 1.61499 1.22041 1.36516 1.05070 1.22434 0.87532 1.00335 1.01849 1.21739 1.03511 0.93391 0.88782 1.20767 0.82499 0.91495 0.82194 1.90461 1.54010 1.42033 1.63280 1.41946 1.62122 1.11582 1.05772 1.19613 1.46163 0.89429 0.90823 0.90236 1.26014 0.96659 1.02397 0.96300 1.69667 1.48637 1.31211 1.06753 0.85009 0.78816 0.77524 0.77110 1.19800 1.19684 1.19687 1.22205 0.97790 0.96069 0.84875 1.22052 0.95320 1.02247 0.96706 1.23167 1.01842 0.97757 0.96421 1.22870 0.93854 1.02349 1.03501 0.91565 0.92907 0.89074 0.90041 0.89592 0.90361 0.89986 0.93814 0.89378 0.95702 0.92654 0.90247 0.91824 0.87175 0.77122 0.91420 0.90980 0.91708 0.87874 0.87463 0.87290 0.89028 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 9.16 71.98 0.66 -0.86 16 2 C -0.07 -1.03 2.37 -11.54 -0.03 -1.06 16 3 H 0.11 1.19 6.95 -2.39 -0.02 1.17 16 4 C 0.53 11.46 6.61 87.66 0.58 12.04 16 5 O -0.58 -17.48 16.47 -3.03 -0.05 -17.53 16 6 N -0.62 -11.70 3.34 -811.00 -2.71 -14.41 16 7 C 0.10 1.37 6.29 86.73 0.55 1.91 16 8 C -0.11 -1.90 6.25 31.79 0.20 -1.71 16 9 C -0.09 -1.61 2.90 -9.40 -0.03 -1.64 16 10 H 0.08 1.62 6.54 -2.39 -0.02 1.61 16 11 C 0.07 1.43 4.41 86.30 0.38 1.81 16 12 N -0.53 -15.47 4.32 -927.09 -4.01 -19.48 16 13 C 0.03 0.80 8.98 127.69 1.15 1.94 16 14 C 0.06 1.87 5.45 85.56 0.47 2.34 16 15 C 0.44 20.43 7.47 87.66 0.66 21.08 16 16 O -0.61 -32.55 13.91 -3.08 -0.04 -32.59 16 17 N -0.58 -29.08 5.29 -306.98 -1.62 -30.70 16 18 C -0.33 -18.52 9.68 84.04 0.81 -17.71 16 19 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 20 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 21 N -0.92 -49.43 13.05 21.66 0.28 -49.15 16 22 Si 0.99 42.59 29.55 68.60 2.03 44.61 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 26 C 0.11 2.20 6.38 86.79 0.55 2.75 16 27 C -0.14 -2.22 4.61 -10.79 -0.05 -2.27 16 28 C -0.16 -1.73 10.18 30.62 0.31 -1.42 16 29 C -0.19 -3.12 9.72 30.62 0.30 -2.82 16 30 H 0.07 0.69 7.36 -2.38 -0.02 0.67 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 0.93 7.67 -2.39 -0.02 0.91 16 34 H 0.09 0.94 7.36 -2.39 -0.02 0.92 16 35 H 0.08 1.40 8.01 -2.39 -0.02 1.38 16 36 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.04 0.87 8.12 -2.39 -0.02 0.85 16 38 H 0.09 1.69 7.90 -2.39 -0.02 1.67 16 39 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.05 2.14 5.82 -2.39 -0.01 2.13 16 41 H 0.08 2.03 6.45 -2.39 -0.02 2.02 16 42 H 0.06 1.91 8.12 -2.39 -0.02 1.89 16 43 H 0.11 3.15 7.93 -2.39 -0.02 3.13 16 44 H 0.40 19.00 7.90 -92.71 -0.73 18.27 16 45 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 46 H 0.07 1.36 8.04 -2.39 -0.02 1.34 16 47 H 0.06 1.40 8.10 -2.38 -0.02 1.38 16 48 H 0.10 1.69 8.11 -2.39 -0.02 1.67 16 49 H 0.11 0.94 8.05 -2.39 -0.02 0.92 16 50 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 52 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 Total: -1.00 -70.88 414.09 1.02 -69.86 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: 0.17 Total: 35.27 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 6.97 Total: 14.12 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -8.05 Total: -113.74 kcal Atomic # 8 Polarization: -50.03 SS G_CDS: -0.09 Total: -50.12 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -70.88 1.02 -69.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713748738.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.694 kcal (2) G-P(sol) polarization free energy of solvation -70.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds