Wall clock time and date at job start Tue Mar 31 2020 20:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 O 1.21277 * 120.00304 * 240.00314 * 4 2 1 6 6 N 1.34778 * 119.99637 * 59.99942 * 4 2 1 7 7 C 1.46505 * 119.99943 * 180.02562 * 6 4 2 8 8 H 1.09007 * 110.27301 * 32.90826 * 7 6 4 9 9 C 1.54595 * 110.30763 * 270.71626 * 7 6 4 10 10 C 1.54942 * 102.92171 * 219.12223 * 9 7 6 11 11 N 1.48535 * 103.22209 * 37.41804 * 10 9 7 12 12 C 1.46905 * 110.99826 * 200.27897 * 11 10 9 13 13 C 1.50705 * 109.46533 * 307.39637 * 12 11 10 14 14 O 1.21285 * 120.00322 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99550 * 179.97438 * 13 12 11 16 16 C 1.37098 * 120.00086 * 179.97438 * 15 13 12 17 17 H 1.08007 * 119.99923 * 0.02562 * 16 15 13 18 18 C 1.38951 * 120.00143 * 179.97438 * 16 15 13 19 19 N 1.31409 * 120.00007 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00078 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47153 * 60.00102 * 20 18 16 22 22 H 1.48494 * 109.47171 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46992 * 300.00282 * 20 18 16 24 24 C 1.47902 * 105.82031 * 320.78877 * 11 10 9 25 25 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 26 26 C 1.54264 * 110.03558 * 297.91249 * 25 2 1 27 27 C 1.54965 * 104.16439 * 217.13256 * 26 25 2 28 28 C 1.54888 * 102.77455 * 37.88388 * 27 26 25 29 29 C 1.53875 * 110.03580 * 180.69094 * 25 2 1 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 0.97000 * 120.00446 * 0.02562 * 6 4 2 34 34 H 1.08998 * 110.72502 * 337.48673 * 9 7 6 35 35 H 1.09011 * 110.72128 * 100.77011 * 9 7 6 36 36 H 1.08997 * 110.66675 * 278.98544 * 10 9 7 37 37 H 1.08995 * 110.80629 * 155.91742 * 10 9 7 38 38 H 1.08996 * 109.47245 * 67.39348 * 12 11 10 39 39 H 1.08994 * 109.47223 * 187.40035 * 12 11 10 40 40 H 0.97004 * 120.00223 * 0.02562 * 15 13 12 41 41 H 0.97000 * 120.00261 * 179.97438 * 19 18 16 42 42 H 1.08997 * 109.92092 * 265.98019 * 24 11 10 43 43 H 1.09000 * 110.07996 * 144.78026 * 24 11 10 44 44 H 1.09006 * 110.01672 * 59.30159 * 25 2 1 45 45 H 1.09002 * 110.48361 * 335.78113 * 26 25 2 46 46 H 1.09004 * 110.48997 * 98.41869 * 26 25 2 47 47 H 1.09001 * 110.71877 * 279.57622 * 27 26 25 48 48 H 1.08997 * 110.76552 * 156.21718 * 27 26 25 49 49 H 1.09000 * 110.49188 * 203.40465 * 28 27 26 50 50 H 1.09004 * 110.48972 * 80.76053 * 28 27 26 51 51 H 1.09004 * 110.03256 * 238.56827 * 29 25 2 52 52 H 1.08992 * 110.03152 * 0.02562 * 29 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 2.1947 -0.9409 -3.6507 8 1 2.2713 -2.0120 -3.4634 9 6 3.5660 -0.3694 -4.0786 10 6 3.4655 -0.3486 -5.6246 11 7 2.0522 0.0380 -5.8680 12 6 1.6275 -0.3443 -7.2214 13 6 2.6075 0.2008 -8.2281 14 8 3.5657 0.8440 -7.8549 15 7 2.4198 -0.0273 -9.5431 16 6 3.3110 0.4691 -10.4590 17 1 4.1638 1.0426 -10.1267 18 6 3.1178 0.2334 -11.8147 19 7 2.0805 -0.4647 -12.2189 20 14 4.3325 0.9091 -13.0626 21 1 5.6824 0.3531 -12.7907 22 1 3.9036 0.5222 -14.4306 23 1 4.3769 2.3898 -12.9585 24 6 1.2575 -0.6725 -4.8427 25 6 2.0400 -0.7212 1.2493 26 6 1.5766 0.0258 2.5169 27 6 2.7746 -0.1018 3.4916 28 6 3.9974 0.0384 2.5513 29 6 3.5786 -0.7136 1.2711 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.1494 0.5389 -2.5436 34 1 3.7028 0.6386 -3.6872 35 1 4.3750 -1.0238 -3.7534 36 1 3.6706 -1.3366 -6.0368 37 1 4.1450 0.3917 -6.0468 38 1 1.5942 -1.4311 -7.2984 39 1 0.6369 0.0645 -7.4204 40 1 1.6537 -0.5420 -9.8415 41 1 1.9453 -0.6289 -13.1653 42 1 0.8898 -1.6161 -5.2457 43 1 0.4190 -0.0533 -4.5237 44 1 1.6714 -1.7469 1.2646 45 1 1.3785 1.0736 2.2913 46 1 0.6899 -0.4491 2.9369 47 1 2.7725 -1.0764 3.9797 48 1 2.7602 0.7009 4.2288 49 1 4.8766 -0.4271 2.9968 50 1 4.1909 1.0882 2.3309 51 1 3.9567 -1.7357 1.2979 52 1 3.9619 -0.1958 0.3920 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715005471.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:31 Heat of formation + Delta-G solvation = -84.438570 kcal Electronic energy + Delta-G solvation = -29391.136467 eV Core-core repulsion = 25389.542818 eV Total energy + Delta-G solvation = -4001.593649 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.57216 -39.24869 -38.14668 -37.27120 -34.51674 -33.92108 -33.48961 -31.40268 -30.72814 -29.02028 -28.48175 -27.78944 -26.50792 -24.48746 -23.97046 -21.28692 -21.05916 -20.87650 -20.48102 -19.66628 -19.24885 -17.89254 -17.28775 -16.61884 -15.97350 -15.93375 -15.51593 -15.29094 -15.07324 -14.62164 -14.47703 -14.27548 -13.84881 -13.77784 -13.60881 -13.48715 -13.14266 -12.98765 -12.60762 -12.42462 -12.30969 -12.01208 -11.83048 -11.61589 -11.55746 -11.44290 -11.34122 -11.31015 -11.24248 -11.06212 -10.97280 -10.94778 -10.88734 -10.61106 -10.56592 -10.43071 -10.23749 -9.74366 -9.50736 -9.14039 -8.38694 -8.04754 -7.93095 -6.44123 -3.85122 2.54351 3.03441 3.18476 3.24605 3.28826 3.86528 4.05357 4.20674 4.26612 4.31039 4.37059 4.54989 4.66395 4.77690 4.81869 4.87726 5.05473 5.08202 5.18529 5.20780 5.25055 5.28892 5.33556 5.37096 5.42042 5.45907 5.48287 5.50448 5.53542 5.66002 5.69695 5.72039 5.74319 5.78966 5.84016 5.88444 5.94151 6.02643 6.06226 6.16275 6.20485 6.23027 6.28562 6.47738 6.67462 7.17812 7.23028 7.41730 7.52846 8.03068 8.13620 8.58705 9.15210 9.50786 10.02392 10.73371 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034593 B = 0.001770 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.220443 B =15817.202427 C =16249.636104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 H 0.097 0.903 4 C 0.516 3.484 5 O -0.537 6.537 6 N -0.720 5.720 7 C 0.135 3.865 8 H 0.093 0.907 9 C -0.134 4.134 10 C 0.038 3.962 11 N -0.494 5.494 12 C 0.036 3.964 13 C 0.441 3.559 14 O -0.581 6.581 15 N -0.561 5.561 16 C -0.300 4.300 17 H 0.103 0.897 18 C 0.023 3.977 19 N -0.901 5.901 20 Si 0.931 3.069 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.027 3.973 25 C -0.071 4.071 26 C -0.120 4.120 27 C -0.125 4.125 28 C -0.129 4.129 29 C -0.108 4.108 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.401 0.599 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.038 0.962 37 H 0.121 0.879 38 H 0.050 0.950 39 H 0.090 0.910 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.052 0.948 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.063 0.937 49 H 0.062 0.938 50 H 0.062 0.938 51 H 0.066 0.934 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.464 -0.545 27.035 27.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 H 0.115 0.885 4 C 0.302 3.698 5 O -0.413 6.413 6 N -0.371 5.371 7 C 0.030 3.970 8 H 0.111 0.889 9 C -0.173 4.173 10 C -0.089 4.089 11 N -0.218 5.218 12 C -0.096 4.096 13 C 0.227 3.773 14 O -0.466 6.466 15 N -0.197 5.197 16 C -0.430 4.430 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.542 5.542 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.102 4.102 25 C -0.089 4.089 26 C -0.157 4.157 27 C -0.163 4.163 28 C -0.167 4.167 29 C -0.146 4.146 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.236 0.764 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.139 0.861 38 H 0.068 0.932 39 H 0.108 0.892 40 H 0.226 0.774 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.082 0.918 49 H 0.081 0.919 50 H 0.081 0.919 51 H 0.085 0.915 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.457 -0.335 27.161 27.526 hybrid contribution -0.246 -0.560 -1.218 1.363 sum -4.703 -0.896 25.943 26.381 Atomic orbital electron populations 1.21807 0.92969 1.02776 1.02718 1.21495 0.97393 1.00753 0.93041 0.88533 1.20657 0.79943 0.84606 0.84580 1.90697 1.37549 1.26339 1.86747 1.46168 1.53719 1.31877 1.05380 1.21845 0.93933 0.97462 0.83756 0.88937 1.22983 0.96168 1.01620 0.96551 1.23491 0.91205 1.00928 0.93280 1.64633 1.03332 1.52993 1.00870 1.22112 0.99722 0.98467 0.89300 1.19684 0.88222 0.86082 0.83314 1.90435 1.32821 1.44417 1.78898 1.41844 1.25497 1.48042 1.04297 1.19657 1.06085 1.31107 0.86154 0.87915 1.25269 0.97533 0.97070 0.98004 1.69601 1.28273 1.39431 1.16893 0.85909 0.80116 0.79314 0.78829 1.19907 1.20966 1.19872 1.23181 0.96804 0.97836 0.92365 1.21577 0.95943 0.99349 0.92074 1.22478 0.97915 1.00372 0.94957 1.22501 0.94878 1.01495 0.97403 1.22435 0.97758 1.00427 0.96069 1.22096 0.94472 1.00900 0.97109 0.92085 0.92072 0.91273 0.76419 0.90579 0.90990 0.94408 0.86130 0.93229 0.89179 0.77439 0.91783 0.92927 0.90043 0.90509 0.91420 0.91667 0.91603 0.91776 0.91922 0.91885 0.91506 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 8.88 37.16 0.33 -0.52 16 2 C -0.11 -0.81 2.01 -91.78 -0.18 -0.99 16 3 H 0.10 0.65 8.13 -51.93 -0.42 0.23 16 4 C 0.52 5.56 6.55 -10.99 -0.07 5.49 16 5 O -0.54 -7.72 14.37 5.56 0.08 -7.64 16 6 N -0.72 -7.17 4.95 -52.49 -0.26 -7.43 16 7 C 0.14 1.64 3.34 -66.57 -0.22 1.42 16 8 H 0.09 1.22 7.56 -51.93 -0.39 0.83 16 9 C -0.13 -1.85 6.78 -24.87 -0.17 -2.02 16 10 C 0.04 0.65 5.31 -1.89 -0.01 0.64 16 11 N -0.49 -8.04 5.26 -231.89 -1.22 -9.26 16 12 C 0.04 0.63 5.52 -4.97 -0.03 0.60 16 13 C 0.44 10.24 7.49 -10.98 -0.08 10.16 16 14 O -0.58 -15.17 13.09 5.55 0.07 -15.10 16 15 N -0.56 -14.05 5.29 -10.96 -0.06 -14.11 16 16 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 17 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 18 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 19 N -0.90 -24.32 13.05 55.50 0.72 -23.59 16 20 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 C 0.03 0.33 6.47 -2.76 -0.02 0.32 16 25 C -0.07 -0.57 2.12 -89.50 -0.19 -0.76 16 26 C -0.12 -0.74 5.30 -25.03 -0.13 -0.88 16 27 C -0.13 -0.80 6.91 -24.70 -0.17 -0.97 16 28 C -0.13 -0.97 6.83 -25.07 -0.17 -1.14 16 29 C -0.11 -1.01 5.10 -25.61 -0.13 -1.14 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.31 7.56 -51.93 -0.39 -0.08 16 32 H 0.07 0.32 7.22 -51.93 -0.38 -0.05 16 33 H 0.40 3.16 7.77 -40.82 -0.32 2.84 16 34 H 0.08 1.05 8.06 -51.93 -0.42 0.64 16 35 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 36 H 0.04 0.65 8.02 -51.93 -0.42 0.24 16 37 H 0.12 2.44 5.96 -51.93 -0.31 2.13 16 38 H 0.05 0.80 7.81 -51.93 -0.41 0.40 16 39 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 41 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.05 0.62 7.57 -51.93 -0.39 0.23 16 43 H 0.08 0.87 7.65 -51.93 -0.40 0.47 16 44 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 45 H 0.07 0.38 7.72 -51.93 -0.40 -0.02 16 46 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 52 H 0.06 0.66 6.96 -51.93 -0.36 0.30 16 LS Contribution 403.41 15.07 6.08 6.08 Total: -1.00 -31.43 403.41 -10.16 -41.59 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -9.06 Total: 11.28 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -1.49 Total: 2.28 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: -0.81 Total: -54.39 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: 0.15 Total: -22.74 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.43 -10.16 -41.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715005471.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.852 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds