Wall clock time and date at job start Tue Mar 31 2020 20:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 O 1.21277 * 120.00304 * 240.00314 * 4 2 1 6 6 N 1.34778 * 119.99637 * 59.99942 * 4 2 1 7 7 C 1.46505 * 119.99943 * 180.02562 * 6 4 2 8 8 H 1.09007 * 110.27301 * 32.90826 * 7 6 4 9 9 C 1.54595 * 110.30763 * 270.71626 * 7 6 4 10 10 C 1.54942 * 102.92171 * 219.12223 * 9 7 6 11 11 N 1.48535 * 103.22209 * 37.41804 * 10 9 7 12 12 C 1.46905 * 110.99826 * 200.27897 * 11 10 9 13 13 C 1.50705 * 109.46533 * 307.39637 * 12 11 10 14 14 O 1.21285 * 120.00322 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99550 * 179.97438 * 13 12 11 16 16 C 1.37098 * 120.00086 * 179.97438 * 15 13 12 17 17 H 1.08007 * 119.99923 * 0.02562 * 16 15 13 18 18 C 1.38951 * 120.00143 * 179.97438 * 16 15 13 19 19 N 1.31409 * 120.00007 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00078 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47153 * 60.00102 * 20 18 16 22 22 H 1.48494 * 109.47171 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46992 * 300.00282 * 20 18 16 24 24 C 1.47902 * 105.82031 * 320.78877 * 11 10 9 25 25 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 26 26 C 1.54264 * 110.03558 * 297.91249 * 25 2 1 27 27 C 1.54965 * 104.16439 * 217.13256 * 26 25 2 28 28 C 1.54888 * 102.77455 * 37.88388 * 27 26 25 29 29 C 1.53875 * 110.03580 * 180.69094 * 25 2 1 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 0.97000 * 120.00446 * 0.02562 * 6 4 2 34 34 H 1.08998 * 110.72502 * 337.48673 * 9 7 6 35 35 H 1.09011 * 110.72128 * 100.77011 * 9 7 6 36 36 H 1.08997 * 110.66675 * 278.98544 * 10 9 7 37 37 H 1.08995 * 110.80629 * 155.91742 * 10 9 7 38 38 H 1.08996 * 109.47245 * 67.39348 * 12 11 10 39 39 H 1.08994 * 109.47223 * 187.40035 * 12 11 10 40 40 H 0.97004 * 120.00223 * 0.02562 * 15 13 12 41 41 H 0.97000 * 120.00261 * 179.97438 * 19 18 16 42 42 H 1.08997 * 109.92092 * 265.98019 * 24 11 10 43 43 H 1.09000 * 110.07996 * 144.78026 * 24 11 10 44 44 H 1.09006 * 110.01672 * 59.30159 * 25 2 1 45 45 H 1.09002 * 110.48361 * 335.78113 * 26 25 2 46 46 H 1.09004 * 110.48997 * 98.41869 * 26 25 2 47 47 H 1.09001 * 110.71877 * 279.57622 * 27 26 25 48 48 H 1.08997 * 110.76552 * 156.21718 * 27 26 25 49 49 H 1.09000 * 110.49188 * 203.40465 * 28 27 26 50 50 H 1.09004 * 110.48972 * 80.76053 * 28 27 26 51 51 H 1.09004 * 110.03256 * 238.56827 * 29 25 2 52 52 H 1.08992 * 110.03152 * 0.02562 * 29 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 2.1947 -0.9409 -3.6507 8 1 2.2713 -2.0120 -3.4634 9 6 3.5660 -0.3694 -4.0786 10 6 3.4655 -0.3486 -5.6246 11 7 2.0522 0.0380 -5.8680 12 6 1.6275 -0.3443 -7.2214 13 6 2.6075 0.2008 -8.2281 14 8 3.5657 0.8440 -7.8549 15 7 2.4198 -0.0273 -9.5431 16 6 3.3110 0.4691 -10.4590 17 1 4.1638 1.0426 -10.1267 18 6 3.1178 0.2334 -11.8147 19 7 2.0805 -0.4647 -12.2189 20 14 4.3325 0.9091 -13.0626 21 1 5.6824 0.3531 -12.7907 22 1 3.9036 0.5222 -14.4306 23 1 4.3769 2.3898 -12.9585 24 6 1.2575 -0.6725 -4.8427 25 6 2.0400 -0.7212 1.2493 26 6 1.5766 0.0258 2.5169 27 6 2.7746 -0.1018 3.4916 28 6 3.9974 0.0384 2.5513 29 6 3.5786 -0.7136 1.2711 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.1494 0.5389 -2.5436 34 1 3.7028 0.6386 -3.6872 35 1 4.3750 -1.0238 -3.7534 36 1 3.6706 -1.3366 -6.0368 37 1 4.1450 0.3917 -6.0468 38 1 1.5942 -1.4311 -7.2984 39 1 0.6369 0.0645 -7.4204 40 1 1.6537 -0.5420 -9.8415 41 1 1.9453 -0.6289 -13.1653 42 1 0.8898 -1.6161 -5.2457 43 1 0.4190 -0.0533 -4.5237 44 1 1.6714 -1.7469 1.2646 45 1 1.3785 1.0736 2.2913 46 1 0.6899 -0.4491 2.9369 47 1 2.7725 -1.0764 3.9797 48 1 2.7602 0.7009 4.2288 49 1 4.8766 -0.4271 2.9968 50 1 4.1909 1.0882 2.3309 51 1 3.9567 -1.7357 1.2979 52 1 3.9619 -0.1958 0.3920 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715005471.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:29 Heat of formation + Delta-G solvation = -106.343645 kcal Electronic energy + Delta-G solvation = -29392.086343 eV Core-core repulsion = 25389.542818 eV Total energy + Delta-G solvation = -4002.543525 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.46565 -40.61690 -39.33054 -38.41449 -36.05591 -35.33908 -34.25643 -33.33025 -32.02382 -29.63921 -29.56666 -28.49533 -27.95839 -26.04626 -24.89206 -22.56267 -22.02053 -21.43197 -21.41207 -21.06408 -20.34935 -19.86864 -18.16847 -17.68126 -17.51122 -16.86181 -16.67411 -16.39015 -16.21602 -15.93597 -15.78658 -15.54505 -15.38090 -14.97711 -14.56771 -14.21323 -14.12307 -14.00699 -13.75829 -13.52908 -13.38244 -13.22395 -13.08360 -13.02147 -12.71936 -12.63062 -12.45134 -12.43305 -12.28140 -12.13671 -11.94948 -11.87711 -11.84391 -11.81196 -11.53617 -11.46650 -11.43467 -11.24671 -10.61622 -10.30978 -10.03496 -9.92749 -9.37310 -8.47039 -5.95599 1.39097 1.41348 1.52018 1.69811 2.03619 2.18575 2.28839 2.83748 3.19853 3.29105 3.53228 3.60675 3.72876 3.76243 3.80497 4.00556 4.10962 4.23541 4.26067 4.28098 4.29157 4.40323 4.47712 4.50102 4.54997 4.61284 4.69258 4.73352 4.76929 4.78870 4.85800 4.87296 4.89950 4.95962 5.02282 5.06941 5.13545 5.19103 5.23334 5.28502 5.32479 5.40777 5.45331 5.50836 5.52945 5.58802 5.81657 5.90586 6.07799 6.59939 6.61301 7.12377 7.31555 7.54971 8.10912 8.70013 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034593 B = 0.001770 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.220443 B =15817.202427 C =16249.636104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 H 0.112 0.888 4 C 0.513 3.487 5 O -0.578 6.578 6 N -0.709 5.709 7 C 0.145 3.855 8 H 0.084 0.916 9 C -0.124 4.124 10 C 0.041 3.959 11 N -0.505 5.505 12 C 0.047 3.953 13 C 0.438 3.562 14 O -0.614 6.614 15 N -0.572 5.572 16 C -0.333 4.333 17 H 0.079 0.921 18 C -0.012 4.012 19 N -0.919 5.919 20 Si 0.992 3.008 21 H -0.273 1.273 22 H -0.270 1.270 23 H -0.272 1.272 24 C 0.032 3.968 25 C -0.070 4.070 26 C -0.113 4.113 27 C -0.124 4.124 28 C -0.128 4.128 29 C -0.109 4.109 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.414 0.586 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.027 0.973 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.115 0.885 40 H 0.396 0.604 41 H 0.278 0.722 42 H 0.066 0.934 43 H 0.108 0.892 44 H 0.059 0.941 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.063 0.937 48 H 0.078 0.922 49 H 0.060 0.940 50 H 0.068 0.932 51 H 0.043 0.957 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.437 0.245 28.324 29.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 H 0.130 0.870 4 C 0.301 3.699 5 O -0.457 6.457 6 N -0.362 5.362 7 C 0.039 3.961 8 H 0.102 0.898 9 C -0.163 4.163 10 C -0.087 4.087 11 N -0.230 5.230 12 C -0.085 4.085 13 C 0.225 3.775 14 O -0.501 6.501 15 N -0.209 5.209 16 C -0.463 4.463 17 H 0.097 0.903 18 C -0.212 4.212 19 N -0.560 5.560 20 Si 0.816 3.184 21 H -0.198 1.198 22 H -0.195 1.195 23 H -0.197 1.197 24 C -0.096 4.096 25 C -0.089 4.089 26 C -0.150 4.150 27 C -0.161 4.161 28 C -0.166 4.166 29 C -0.147 4.147 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.252 0.748 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.046 0.954 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.133 0.867 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.126 0.874 44 H 0.078 0.922 45 H 0.100 0.900 46 H 0.094 0.906 47 H 0.082 0.918 48 H 0.097 0.903 49 H 0.079 0.921 50 H 0.087 0.913 51 H 0.062 0.938 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.473 0.466 28.464 29.194 hybrid contribution 0.412 -0.827 -1.562 1.815 sum -6.061 -0.361 26.902 27.578 Atomic orbital electron populations 1.21817 0.91053 1.02717 1.04300 1.21512 0.98806 1.00771 0.90860 0.86967 1.21290 0.79067 0.84103 0.85480 1.90689 1.39384 1.28304 1.87304 1.46049 1.53497 1.32071 1.04543 1.21596 0.92845 0.97052 0.84648 0.89788 1.22854 0.97481 1.01710 0.94259 1.23248 0.91332 0.98957 0.95122 1.64619 1.03237 1.54138 1.01021 1.22027 0.98740 0.99343 0.88356 1.20722 0.88441 0.84739 0.83550 1.90438 1.34515 1.45604 1.79508 1.41912 1.25475 1.48639 1.04860 1.19624 1.06644 1.32534 0.87502 0.90256 1.26025 0.99115 0.96966 0.99112 1.69662 1.29145 1.39671 1.17540 0.84999 0.77907 0.78584 0.76907 1.19840 1.19497 1.19697 1.23246 0.96695 0.98686 0.90932 1.21561 0.94824 0.98958 0.93597 1.22463 0.98093 1.00918 0.93556 1.22514 0.94204 1.01973 0.97452 1.22432 0.98403 1.00364 0.95369 1.22058 0.95686 0.99529 0.97412 0.92961 0.90792 0.89436 0.74793 0.90579 0.91360 0.95415 0.90007 0.91295 0.86684 0.76997 0.91303 0.91606 0.87367 0.92236 0.90015 0.90553 0.91832 0.90323 0.92083 0.91278 0.93833 0.93742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.88 71.98 0.64 -0.59 16 2 C -0.10 -1.31 2.01 -11.54 -0.02 -1.34 16 3 H 0.11 1.20 8.13 -2.39 -0.02 1.18 16 4 C 0.51 10.53 6.55 87.66 0.57 11.10 16 5 O -0.58 -16.80 14.37 -3.02 -0.04 -16.84 16 6 N -0.71 -12.77 4.95 -438.37 -2.17 -14.94 16 7 C 0.14 3.31 3.34 45.87 0.15 3.47 16 8 H 0.08 2.14 7.56 -2.38 -0.02 2.12 16 9 C -0.12 -3.42 6.78 31.80 0.22 -3.21 16 10 C 0.04 1.42 5.31 86.65 0.46 1.88 16 11 N -0.51 -15.84 5.26 -887.57 -4.67 -20.51 16 12 C 0.05 1.58 5.52 85.56 0.47 2.05 16 13 C 0.44 20.59 7.49 87.66 0.66 21.25 16 14 O -0.61 -33.19 13.09 -3.05 -0.04 -33.23 16 15 N -0.57 -29.13 5.29 -306.98 -1.62 -30.76 16 16 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 17 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 18 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 19 N -0.92 -49.40 13.05 21.66 0.28 -49.12 16 20 Si 0.99 42.89 29.55 68.60 2.03 44.92 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 24 C 0.03 0.71 6.47 86.44 0.56 1.27 16 25 C -0.07 -1.07 2.12 -10.07 -0.02 -1.09 16 26 C -0.11 -1.12 5.30 31.69 0.17 -0.95 16 27 C -0.12 -1.35 6.91 31.91 0.22 -1.13 16 28 C -0.13 -1.81 6.83 31.67 0.22 -1.59 16 29 C -0.11 -2.06 5.10 31.32 0.16 -1.90 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.47 7.56 -2.39 -0.02 0.45 16 32 H 0.09 0.48 7.22 -2.38 -0.02 0.46 16 33 H 0.41 5.27 7.77 -92.71 -0.72 4.55 16 34 H 0.08 2.10 8.06 -2.39 -0.02 2.08 16 35 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 36 H 0.03 0.99 8.02 -2.39 -0.02 0.97 16 37 H 0.08 3.49 5.96 -2.39 -0.01 3.47 16 38 H 0.07 2.10 7.81 -2.39 -0.02 2.08 16 39 H 0.12 3.38 8.14 -2.39 -0.02 3.36 16 40 H 0.40 19.16 7.90 -92.71 -0.73 18.43 16 41 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 42 H 0.07 1.34 7.57 -2.39 -0.02 1.32 16 43 H 0.11 1.86 7.65 -2.39 -0.02 1.84 16 44 H 0.06 1.11 8.12 -2.38 -0.02 1.09 16 45 H 0.08 0.61 7.72 -2.39 -0.02 0.60 16 46 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 47 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 51 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 52 H 0.04 0.97 6.96 -2.39 -0.02 0.96 16 Total: -1.00 -70.62 403.41 -1.04 -71.66 By element: Atomic # 1 Polarization: 38.36 SS G_CDS: -0.53 Total: 37.83 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 5.73 Total: 11.00 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -8.18 Total: -115.33 kcal Atomic # 8 Polarization: -49.99 SS G_CDS: -0.08 Total: -50.07 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -70.62 -1.04 -71.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715005471.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.683 kcal (2) G-P(sol) polarization free energy of solvation -70.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds