Wall clock time and date at job start Tue Mar 31 2020 19:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99486 * 2 1 4 4 C 1.50699 * 120.00284 * 179.97438 * 2 1 3 5 5 C 1.53002 * 109.47137 * 94.99764 * 4 2 1 6 6 C 1.50699 * 109.47137 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99925 * 359.97438 * 6 5 4 8 8 N 1.34769 * 120.00121 * 180.02562 * 6 5 4 9 9 C 1.48146 * 127.83810 * 0.02607 * 8 6 5 10 10 C 1.54390 * 104.61889 * 140.41794 * 9 8 6 11 11 H 1.09003 * 110.34453 * 264.99518 * 10 9 8 12 12 C 1.53006 * 110.34276 * 142.73892 * 10 9 8 13 13 C 1.54283 * 104.96125 * 23.86757 * 10 9 8 14 14 H 1.09002 * 110.34406 * 118.87089 * 13 10 9 15 15 C 1.52997 * 110.34200 * 241.02293 * 13 10 9 16 16 N 1.46900 * 109.46959 * 183.52499 * 15 13 10 17 17 C 1.46905 * 110.99923 * 180.02562 * 16 15 13 18 18 C 1.50697 * 109.47248 * 179.97438 * 17 16 15 19 19 O 1.21295 * 119.99812 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00428 * 179.97438 * 18 17 16 21 21 C 1.37096 * 120.00600 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99568 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00418 * 179.97438 * 21 20 18 24 24 N 1.31408 * 119.99631 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00185 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47005 * 59.99973 * 25 23 21 27 27 H 1.48503 * 109.47115 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47317 * 300.00360 * 25 23 21 29 29 C 1.48317 * 127.77054 * 179.97438 * 8 6 5 30 30 H 1.08004 * 119.99783 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.00632 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.47270 * 269.99491 * 3 2 1 33 33 H 1.09000 * 109.47466 * 29.99844 * 3 2 1 34 34 H 1.09001 * 109.46963 * 150.00532 * 3 2 1 35 35 H 1.09003 * 109.47070 * 334.99618 * 4 2 1 36 36 H 1.09001 * 109.46877 * 215.00128 * 4 2 1 37 37 H 1.09002 * 109.46530 * 60.00542 * 5 4 2 38 38 H 1.08997 * 109.47153 * 300.00301 * 5 4 2 39 39 H 1.09000 * 110.40949 * 21.63687 * 9 8 6 40 40 H 1.08998 * 110.40973 * 259.20254 * 9 8 6 41 41 H 1.09004 * 109.46596 * 304.46072 * 12 10 9 42 42 H 1.09000 * 109.46858 * 64.46083 * 12 10 9 43 43 H 1.08996 * 109.47103 * 184.46543 * 12 10 9 44 44 H 1.08995 * 109.47557 * 303.52341 * 15 13 10 45 45 H 1.09004 * 109.47293 * 63.52599 * 15 13 10 46 46 H 1.00897 * 111.00506 * 56.04405 * 16 15 13 47 47 H 1.09000 * 109.47276 * 300.00176 * 17 16 15 48 48 H 1.08998 * 109.47254 * 60.00161 * 17 16 15 49 49 H 0.96998 * 119.99667 * 359.97438 * 20 18 17 50 50 H 0.97002 * 119.99695 * 180.02562 * 24 23 21 51 51 H 1.09000 * 110.38040 * 100.79235 * 29 8 6 52 52 H 1.08992 * 110.50701 * 338.30692 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3051 0.0006 5 6 2.4274 -1.6845 -1.4363 6 6 3.1804 -2.9899 -1.4358 7 8 3.4045 -3.5603 -0.3891 8 7 3.6058 -3.5229 -2.5982 9 6 3.4313 -2.9791 -3.9651 10 6 4.7724 -3.2675 -4.6734 11 1 5.4291 -2.3999 -4.6092 12 6 4.5308 -3.6460 -6.1361 13 6 5.3808 -4.4587 -3.9046 14 1 5.5076 -5.3135 -4.5689 15 6 6.7233 -4.0630 -3.2866 16 7 7.3247 -5.2325 -2.6319 17 6 8.6178 -4.8892 -2.0252 18 6 9.2026 -6.1107 -1.3642 19 8 8.6016 -7.1638 -1.3958 20 7 10.3940 -6.0334 -0.7389 21 6 10.9263 -7.1447 -0.1380 22 1 10.3907 -8.0822 -0.1654 23 6 12.1548 -7.0651 0.5063 24 7 12.8062 -5.9243 0.5401 25 14 12.8797 -8.5791 1.3257 26 1 13.0754 -9.6454 0.3107 27 1 14.1872 -8.2323 1.9384 28 1 11.9525 -9.0634 2.3798 29 6 4.3558 -4.7869 -2.7973 30 1 -0.5400 -0.9354 -0.0004 31 1 -0.5401 0.9352 -0.0004 32 1 2.2451 1.6198 -1.0276 33 1 1.4743 2.0648 0.5138 34 1 3.0159 1.1749 0.5138 35 1 1.4387 -2.0852 0.4353 36 1 2.9742 -1.1985 0.5900 37 1 3.0524 -0.9043 -1.8709 38 1 1.5167 -1.7910 -2.0256 39 1 3.2451 -1.9058 -3.9262 40 1 2.6144 -3.4891 -4.4757 41 1 3.8418 -4.4893 -6.1840 42 1 4.1014 -2.7953 -6.6653 43 1 5.4770 -3.9231 -6.6007 44 1 7.3908 -3.7012 -4.0686 45 1 6.5661 -3.2751 -2.5499 46 1 7.4212 -5.9999 -3.2799 47 1 9.2986 -4.5329 -2.7982 48 1 8.4733 -4.1073 -1.2798 49 1 10.8752 -5.1915 -0.7145 50 1 13.6640 -5.8687 0.9896 51 1 3.6833 -5.5798 -3.1248 52 1 4.8673 -5.0761 -1.8794 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716983418.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:17 Heat of formation + Delta-G solvation = -67.381713 kcal Electronic energy + Delta-G solvation = -28966.382895 eV Core-core repulsion = 24965.528887 eV Total energy + Delta-G solvation = -4000.854008 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.35403 -38.54720 -38.05764 -36.58718 -35.27345 -33.81512 -32.99507 -31.62798 -31.20131 -30.27979 -27.63176 -27.18844 -26.65744 -25.52788 -24.20862 -23.45869 -21.70492 -20.15200 -19.34223 -19.12574 -18.73667 -17.84614 -17.07054 -16.44215 -16.09810 -15.75847 -15.58932 -15.25113 -14.81756 -14.50155 -14.44514 -14.31145 -14.06835 -13.76824 -13.64164 -13.51397 -13.32724 -13.09153 -12.88125 -12.69690 -12.42226 -12.28917 -12.05212 -12.04151 -11.96658 -11.71232 -11.52812 -11.45728 -11.32962 -11.16771 -11.03938 -10.96939 -10.85712 -10.65556 -10.41220 -10.17589 -9.91555 -9.46275 -9.33764 -8.82581 -8.42211 -8.01831 -7.91963 -6.38022 -3.78668 1.87322 2.56665 2.84972 3.23150 3.28293 3.33105 3.94870 4.02725 4.18966 4.24631 4.34960 4.51585 4.58660 4.65370 4.74040 4.87045 4.92695 5.01973 5.03588 5.10325 5.15385 5.20994 5.23958 5.25604 5.29742 5.32190 5.34922 5.43250 5.57254 5.59574 5.63288 5.64412 5.68466 5.74219 5.81368 5.83820 5.87502 5.89952 5.95601 6.02386 6.15890 6.28525 6.31436 6.32551 6.55830 7.23375 7.46484 7.58630 7.69731 8.09977 8.10150 8.65313 9.21575 9.58290 10.09996 10.79769 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011559 B = 0.002143 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.858504 B =13060.526997 C =14628.539391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 C -0.122 4.122 4 C -0.073 4.073 5 C -0.127 4.127 6 C 0.529 3.471 7 O -0.532 6.532 8 N -0.626 5.626 9 C 0.105 3.895 10 C -0.103 4.103 11 H 0.082 0.918 12 C -0.142 4.142 13 C -0.095 4.095 14 H 0.088 0.912 15 C 0.069 3.931 16 N -0.668 5.668 17 C 0.052 3.948 18 C 0.442 3.558 19 O -0.582 6.582 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 C 0.111 3.889 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.028 0.972 45 H 0.070 0.930 46 H 0.348 0.652 47 H 0.042 0.958 48 H 0.084 0.916 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.066 0.934 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.460 15.566 -12.245 29.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.123 4.123 3 C -0.178 4.178 4 C -0.111 4.111 5 C -0.167 4.167 6 C 0.318 3.682 7 O -0.408 6.408 8 N -0.360 5.360 9 C -0.019 4.019 10 C -0.123 4.123 11 H 0.101 0.899 12 C -0.200 4.200 13 C -0.114 4.114 14 H 0.106 0.894 15 C -0.061 4.061 16 N -0.300 5.300 17 C -0.080 4.080 18 C 0.227 3.773 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.011 4.011 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.046 0.954 45 H 0.088 0.912 46 H 0.168 0.832 47 H 0.060 0.940 48 H 0.103 0.897 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.084 0.916 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -21.937 14.720 -10.891 28.574 hybrid contribution 1.329 -0.006 -0.482 1.414 sum -20.607 14.714 -11.373 27.758 Atomic orbital electron populations 1.23712 0.95234 1.01842 1.02696 1.21793 0.95423 0.95720 0.99393 1.20894 1.00400 0.94456 1.02097 1.20465 1.01078 0.94260 0.95261 1.21589 1.00854 0.94947 0.99322 1.20329 0.79179 0.86620 0.82044 1.90769 1.56782 1.62878 1.30395 1.49085 1.56673 1.24563 1.05728 1.22488 0.97550 0.99413 0.82421 1.22152 0.96275 0.98764 0.95110 0.89916 1.21823 1.02189 1.01497 0.94471 1.22197 0.94807 0.97979 0.96466 0.89383 1.21994 0.93697 0.93776 0.96622 1.60019 1.24509 1.07548 1.37936 1.21644 0.89891 0.97882 0.98609 1.19805 0.83117 0.89700 0.84681 1.90521 1.61369 1.30713 1.64055 1.41853 1.17346 1.12731 1.48169 1.19656 1.02114 0.91031 1.30027 0.87980 1.25263 0.96578 0.98256 0.97920 1.69607 1.15794 1.24871 1.44148 0.85911 0.77912 0.80943 0.79406 1.19941 1.21004 1.19866 1.22426 0.92694 0.85259 1.00678 0.88468 0.88535 0.91468 0.91877 0.91602 0.90470 0.90244 0.89009 0.89132 0.90474 0.90931 0.92244 0.92422 0.92044 0.95382 0.91199 0.83240 0.93975 0.89737 0.77488 0.91863 0.91560 0.87785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.40 13.89 29.01 0.40 -1.00 16 2 C -0.12 -0.95 5.31 -101.07 -0.54 -1.48 16 3 C -0.12 -0.78 10.03 36.01 0.36 -0.42 16 4 C -0.07 -0.68 4.67 -27.88 -0.13 -0.81 16 5 C -0.13 -1.07 4.66 -27.88 -0.13 -1.20 16 6 C 0.53 6.61 7.91 -10.99 -0.09 6.52 16 7 O -0.53 -9.23 16.25 5.55 0.09 -9.14 16 8 N -0.63 -6.75 3.32 -169.15 -0.56 -7.31 16 9 C 0.10 0.73 6.46 -2.41 -0.02 0.71 16 10 C -0.10 -0.73 3.31 -89.22 -0.30 -1.03 16 11 H 0.08 0.59 7.71 -51.93 -0.40 0.19 16 12 C -0.14 -0.79 8.92 37.16 0.33 -0.46 16 13 C -0.09 -0.94 2.89 -89.21 -0.26 -1.20 16 14 H 0.09 0.83 7.71 -51.93 -0.40 0.43 16 15 C 0.07 0.84 4.81 -3.83 -0.02 0.83 16 16 N -0.67 -10.93 5.64 -115.06 -0.65 -11.58 16 17 C 0.05 0.96 6.17 -4.97 -0.03 0.93 16 18 C 0.44 10.76 7.82 -10.99 -0.09 10.68 16 19 O -0.58 -16.23 15.78 5.54 0.09 -16.14 16 20 N -0.56 -14.73 5.29 -10.96 -0.06 -14.79 16 21 C -0.30 -8.54 9.68 -14.93 -0.14 -8.69 16 22 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -25.05 13.05 55.50 0.72 -24.33 16 25 Si 0.93 21.53 29.55 -169.99 -5.02 16.50 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 29 C 0.11 1.35 6.54 -2.30 -0.02 1.33 16 30 H 0.10 0.67 7.99 -52.48 -0.42 0.25 16 31 H 0.10 0.57 8.04 -52.49 -0.42 0.15 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.36 8.06 -51.93 -0.42 -0.06 16 34 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 35 H 0.08 0.80 7.94 -51.93 -0.41 0.39 16 36 H 0.08 0.85 8.05 -51.93 -0.42 0.43 16 37 H 0.09 0.63 7.95 -51.93 -0.41 0.22 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.40 7.30 -51.93 -0.38 0.02 16 40 H 0.07 0.43 7.83 -51.93 -0.41 0.02 16 41 H 0.06 0.32 8.10 -51.93 -0.42 -0.10 16 42 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.35 5.74 8.43 -39.29 -0.33 5.41 16 47 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 49 H 0.39 9.78 7.90 -40.82 -0.32 9.45 16 50 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 51 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 52 H 0.10 1.69 7.25 -51.93 -0.38 1.31 16 LS Contribution 425.86 15.07 6.42 6.42 Total: -1.00 -34.39 425.86 -8.99 -43.38 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -9.28 Total: 11.79 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -0.75 Total: 5.20 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: -0.54 Total: -58.01 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: 0.18 Total: -25.28 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -34.39 -8.99 -43.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716983418.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.999 kcal (2) G-P(sol) polarization free energy of solvation -34.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds