Wall clock time and date at job start Tue Mar 31 2020 19:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 119.99486 * 2 1 4 4 C 1.50699 * 120.00284 * 179.97438 * 2 1 3 5 5 C 1.53002 * 109.47137 * 94.99764 * 4 2 1 6 6 C 1.50699 * 109.47137 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99925 * 359.97438 * 6 5 4 8 8 N 1.34769 * 120.00121 * 180.02562 * 6 5 4 9 9 C 1.48146 * 127.83810 * 0.02607 * 8 6 5 10 10 C 1.54390 * 104.61889 * 140.41794 * 9 8 6 11 11 H 1.09003 * 110.34453 * 264.99518 * 10 9 8 12 12 C 1.53006 * 110.34276 * 142.73892 * 10 9 8 13 13 C 1.54283 * 104.96125 * 23.86757 * 10 9 8 14 14 H 1.09002 * 110.34406 * 118.87089 * 13 10 9 15 15 C 1.52997 * 110.34200 * 241.02293 * 13 10 9 16 16 N 1.46900 * 109.46959 * 183.52499 * 15 13 10 17 17 C 1.46905 * 110.99923 * 180.02562 * 16 15 13 18 18 C 1.50697 * 109.47248 * 179.97438 * 17 16 15 19 19 O 1.21295 * 119.99812 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00428 * 179.97438 * 18 17 16 21 21 C 1.37096 * 120.00600 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99568 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00418 * 179.97438 * 21 20 18 24 24 N 1.31408 * 119.99631 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00185 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47005 * 59.99973 * 25 23 21 27 27 H 1.48503 * 109.47115 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47317 * 300.00360 * 25 23 21 29 29 C 1.48317 * 127.77054 * 179.97438 * 8 6 5 30 30 H 1.08004 * 119.99783 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.00632 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.47270 * 269.99491 * 3 2 1 33 33 H 1.09000 * 109.47466 * 29.99844 * 3 2 1 34 34 H 1.09001 * 109.46963 * 150.00532 * 3 2 1 35 35 H 1.09003 * 109.47070 * 334.99618 * 4 2 1 36 36 H 1.09001 * 109.46877 * 215.00128 * 4 2 1 37 37 H 1.09002 * 109.46530 * 60.00542 * 5 4 2 38 38 H 1.08997 * 109.47153 * 300.00301 * 5 4 2 39 39 H 1.09000 * 110.40949 * 21.63687 * 9 8 6 40 40 H 1.08998 * 110.40973 * 259.20254 * 9 8 6 41 41 H 1.09004 * 109.46596 * 304.46072 * 12 10 9 42 42 H 1.09000 * 109.46858 * 64.46083 * 12 10 9 43 43 H 1.08996 * 109.47103 * 184.46543 * 12 10 9 44 44 H 1.08995 * 109.47557 * 303.52341 * 15 13 10 45 45 H 1.09004 * 109.47293 * 63.52599 * 15 13 10 46 46 H 1.00897 * 111.00506 * 56.04405 * 16 15 13 47 47 H 1.09000 * 109.47276 * 300.00176 * 17 16 15 48 48 H 1.08998 * 109.47254 * 60.00161 * 17 16 15 49 49 H 0.96998 * 119.99667 * 359.97438 * 20 18 17 50 50 H 0.97002 * 119.99695 * 180.02562 * 24 23 21 51 51 H 1.09000 * 110.38040 * 100.79235 * 29 8 6 52 52 H 1.08992 * 110.50701 * 338.30692 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3051 0.0006 5 6 2.4274 -1.6845 -1.4363 6 6 3.1804 -2.9899 -1.4358 7 8 3.4045 -3.5603 -0.3891 8 7 3.6058 -3.5229 -2.5982 9 6 3.4313 -2.9791 -3.9651 10 6 4.7724 -3.2675 -4.6734 11 1 5.4291 -2.3999 -4.6092 12 6 4.5308 -3.6460 -6.1361 13 6 5.3808 -4.4587 -3.9046 14 1 5.5076 -5.3135 -4.5689 15 6 6.7233 -4.0630 -3.2866 16 7 7.3247 -5.2325 -2.6319 17 6 8.6178 -4.8892 -2.0252 18 6 9.2026 -6.1107 -1.3642 19 8 8.6016 -7.1638 -1.3958 20 7 10.3940 -6.0334 -0.7389 21 6 10.9263 -7.1447 -0.1380 22 1 10.3907 -8.0822 -0.1654 23 6 12.1548 -7.0651 0.5063 24 7 12.8062 -5.9243 0.5401 25 14 12.8797 -8.5791 1.3257 26 1 13.0754 -9.6454 0.3107 27 1 14.1872 -8.2323 1.9384 28 1 11.9525 -9.0634 2.3798 29 6 4.3558 -4.7869 -2.7973 30 1 -0.5400 -0.9354 -0.0004 31 1 -0.5401 0.9352 -0.0004 32 1 2.2451 1.6198 -1.0276 33 1 1.4743 2.0648 0.5138 34 1 3.0159 1.1749 0.5138 35 1 1.4387 -2.0852 0.4353 36 1 2.9742 -1.1985 0.5900 37 1 3.0524 -0.9043 -1.8709 38 1 1.5167 -1.7910 -2.0256 39 1 3.2451 -1.9058 -3.9262 40 1 2.6144 -3.4891 -4.4757 41 1 3.8418 -4.4893 -6.1840 42 1 4.1014 -2.7953 -6.6653 43 1 5.4770 -3.9231 -6.6007 44 1 7.3908 -3.7012 -4.0686 45 1 6.5661 -3.2751 -2.5499 46 1 7.4212 -5.9999 -3.2799 47 1 9.2986 -4.5329 -2.7982 48 1 8.4733 -4.1073 -1.2798 49 1 10.8752 -5.1915 -0.7145 50 1 13.6640 -5.8687 0.9896 51 1 3.6833 -5.5798 -3.1248 52 1 4.8673 -5.0761 -1.8794 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716983418.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:16 Heat of formation + Delta-G solvation = -91.228445 kcal Electronic energy + Delta-G solvation = -28967.416967 eV Core-core repulsion = 24965.528887 eV Total energy + Delta-G solvation = -4001.888080 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.23195 -40.18710 -39.25677 -37.26844 -36.63150 -35.82071 -33.84812 -33.29194 -32.32320 -31.25919 -28.61771 -28.08243 -27.26328 -26.92507 -25.56308 -24.54162 -22.57838 -21.30287 -20.67526 -20.18900 -19.90991 -19.35336 -17.98617 -17.77888 -17.28173 -16.96171 -16.59124 -16.51477 -16.10587 -15.93660 -15.51223 -15.38948 -15.11464 -14.99210 -14.87263 -14.34191 -14.24695 -14.03313 -13.70365 -13.62292 -13.52082 -13.40215 -13.24512 -13.13282 -12.89782 -12.79839 -12.66835 -12.55276 -12.52248 -12.46073 -12.14073 -11.99702 -11.84917 -11.72953 -11.53486 -11.51935 -11.47718 -10.89305 -10.38300 -10.04734 -9.91339 -9.72526 -9.32462 -8.48967 -5.98140 1.30344 1.37872 1.39580 1.50971 1.63200 2.01709 2.03204 2.27248 2.87758 3.17743 3.40415 3.52260 3.63755 3.77514 3.88966 3.95434 4.02398 4.22721 4.23180 4.27456 4.32914 4.38090 4.42277 4.49123 4.53075 4.56213 4.62445 4.69188 4.70079 4.75114 4.79126 4.87110 4.92047 4.96283 5.02877 5.04620 5.09653 5.14969 5.18804 5.21678 5.28230 5.37180 5.38059 5.57577 5.75299 5.85685 5.99261 6.07235 6.41858 6.57079 6.61377 7.09452 7.17432 7.52550 8.07976 8.68310 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011559 B = 0.002143 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.858504 B =13060.526997 C =14628.539391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.131 4.131 3 C -0.121 4.121 4 C -0.071 4.071 5 C -0.114 4.114 6 C 0.519 3.481 7 O -0.596 6.596 8 N -0.625 5.625 9 C 0.102 3.898 10 C -0.093 4.093 11 H 0.090 0.910 12 C -0.138 4.138 13 C -0.088 4.088 14 H 0.096 0.904 15 C 0.073 3.927 16 N -0.686 5.686 17 C 0.068 3.932 18 C 0.436 3.564 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.995 3.005 26 H -0.269 1.269 27 H -0.268 1.268 28 H -0.274 1.274 29 C 0.108 3.892 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.050 0.950 45 H 0.058 0.942 46 H 0.347 0.653 47 H 0.070 0.930 48 H 0.092 0.908 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.072 0.928 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.210 17.634 -14.519 31.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.132 4.132 3 C -0.177 4.177 4 C -0.109 4.109 5 C -0.153 4.153 6 C 0.310 3.690 7 O -0.477 6.477 8 N -0.358 5.358 9 C -0.019 4.019 10 C -0.113 4.113 11 H 0.108 0.892 12 C -0.195 4.195 13 C -0.107 4.107 14 H 0.114 0.886 15 C -0.055 4.055 16 N -0.319 5.319 17 C -0.064 4.064 18 C 0.224 3.776 19 O -0.509 6.509 20 N -0.210 5.210 21 C -0.466 4.466 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.561 5.561 25 Si 0.818 3.182 26 H -0.194 1.194 27 H -0.193 1.193 28 H -0.199 1.199 29 C -0.015 4.015 30 H 0.114 0.886 31 H 0.130 0.870 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.123 0.877 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.166 0.834 47 H 0.088 0.912 48 H 0.110 0.890 49 H 0.230 0.770 50 H 0.088 0.912 51 H 0.090 0.910 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.690 16.838 -13.225 31.197 hybrid contribution 1.512 -0.662 0.212 1.664 sum -21.178 16.176 -13.012 29.656 Atomic orbital electron populations 1.23852 0.95028 1.02543 1.01557 1.21758 0.95641 0.95281 1.00474 1.20909 0.99942 0.93848 1.03043 1.20382 0.99973 0.94899 0.95684 1.21584 1.01629 0.92981 0.99124 1.21146 0.78788 0.87542 0.81527 1.90737 1.59392 1.64818 1.32786 1.49211 1.55488 1.23989 1.07084 1.22802 0.98033 1.01235 0.79879 1.22131 0.96087 0.97369 0.95733 0.89205 1.21797 1.02327 1.02351 0.93051 1.22171 0.92892 0.99817 0.95863 0.88616 1.22040 0.94990 0.91872 0.96621 1.59996 1.23528 1.09290 1.39040 1.21470 0.91135 0.94633 0.99206 1.20878 0.82165 0.91054 0.83515 1.90485 1.62208 1.32971 1.65256 1.41928 1.18111 1.12343 1.48627 1.19640 1.03269 0.91242 1.32410 0.90369 1.26082 0.96257 1.01327 0.97728 1.69668 1.16095 1.26236 1.44073 0.84966 0.77496 0.77409 0.78314 1.19440 1.19274 1.19939 1.22325 0.93437 0.86498 0.99236 0.88631 0.86983 0.90033 0.91053 0.92394 0.92410 0.92467 0.86581 0.86592 0.87695 0.89131 0.92078 0.90558 0.92248 0.93176 0.92380 0.83441 0.91181 0.88980 0.77000 0.91225 0.90961 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.40 13.89 67.78 0.94 -1.46 16 2 C -0.13 -1.86 5.31 -16.49 -0.09 -1.95 16 3 C -0.12 -1.34 10.03 71.24 0.71 -0.62 16 4 C -0.07 -1.35 4.67 29.85 0.14 -1.22 16 5 C -0.11 -1.76 4.66 29.85 0.14 -1.62 16 6 C 0.52 13.15 7.91 87.66 0.69 13.84 16 7 O -0.60 -22.25 16.25 -3.05 -0.05 -22.30 16 8 N -0.62 -13.02 3.32 -807.47 -2.68 -15.70 16 9 C 0.10 1.08 6.46 86.53 0.56 1.64 16 10 C -0.09 -1.03 3.31 -9.88 -0.03 -1.07 16 11 H 0.09 0.93 7.71 -2.39 -0.02 0.91 16 12 C -0.14 -1.02 8.92 71.98 0.64 -0.37 16 13 C -0.09 -1.63 2.89 -9.88 -0.03 -1.66 16 14 H 0.10 1.66 7.71 -2.39 -0.02 1.64 16 15 C 0.07 1.73 4.81 86.30 0.42 2.14 16 16 N -0.69 -22.69 5.64 -517.93 -2.92 -25.61 16 17 C 0.07 2.49 6.17 85.56 0.53 3.02 16 18 C 0.44 21.90 7.82 87.66 0.69 22.58 16 19 O -0.62 -36.14 15.78 -3.08 -0.05 -36.19 16 20 N -0.57 -30.75 5.29 -306.99 -1.62 -32.38 16 21 C -0.34 -19.80 9.68 84.04 0.81 -18.99 16 22 H 0.08 4.90 7.16 -2.91 -0.02 4.87 16 23 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 24 N -0.92 -50.95 13.05 21.66 0.28 -50.67 16 25 Si 0.99 44.20 29.55 68.60 2.03 46.22 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 29 C 0.11 2.67 6.54 86.51 0.57 3.23 16 30 H 0.10 1.20 7.99 -2.91 -0.02 1.18 16 31 H 0.11 1.05 8.04 -2.91 -0.02 1.03 16 32 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.67 8.06 -2.39 -0.02 0.65 16 34 H 0.06 0.73 8.08 -2.39 -0.02 0.71 16 35 H 0.06 1.29 7.94 -2.39 -0.02 1.27 16 36 H 0.06 1.31 8.05 -2.39 -0.02 1.29 16 37 H 0.12 1.25 7.95 -2.39 -0.02 1.23 16 38 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.10 0.59 7.30 -2.39 -0.02 0.57 16 40 H 0.09 0.71 7.83 -2.39 -0.02 0.69 16 41 H 0.06 0.45 8.10 -2.39 -0.02 0.44 16 42 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.06 1.51 8.14 -2.38 -0.02 1.50 16 46 H 0.35 11.57 8.43 -89.70 -0.76 10.82 16 47 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 48 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 49 H 0.40 20.16 7.90 -92.71 -0.73 19.43 16 50 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 51 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 52 H 0.05 1.92 7.25 -2.39 -0.02 1.90 16 Total: -1.00 -79.48 425.86 1.56 -77.92 By element: Atomic # 1 Polarization: 42.09 SS G_CDS: -0.59 Total: 41.51 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 7.16 Total: 17.19 kcal Atomic # 7 Polarization: -117.41 SS G_CDS: -6.94 Total: -124.35 kcal Atomic # 8 Polarization: -58.39 SS G_CDS: -0.10 Total: -58.49 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -79.48 1.56 -77.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716983418.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.305 kcal (2) G-P(sol) polarization free energy of solvation -79.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds