Wall clock time and date at job start Tue Mar 31 2020 20:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21278 * 119.99768 * 2 1 4 4 N 1.34774 * 119.99981 * 180.02562 * 2 1 3 5 5 C 1.46500 * 120.00188 * 174.82167 * 4 2 1 6 6 C 1.50702 * 109.47157 * 302.92454 * 5 4 2 7 7 O 1.21278 * 119.99848 * 141.51739 * 6 5 4 8 8 N 1.34778 * 119.99525 * 321.51322 * 6 5 4 9 9 C 1.47421 * 125.64244 * 175.36750 * 8 6 5 10 10 C 1.55394 * 104.87223 * 204.09718 * 9 8 6 11 11 H 1.08995 * 111.02053 * 80.98225 * 10 9 8 12 12 C 1.52996 * 111.19030 * 204.98123 * 10 9 8 13 13 C 1.55158 * 101.36596 * 323.01678 * 10 9 8 14 14 H 1.08992 * 110.71950 * 153.94053 * 13 10 9 15 15 N 1.46495 * 110.71847 * 277.04421 * 13 10 9 16 16 C 1.36942 * 119.99899 * 202.55700 * 15 13 10 17 17 H 1.08005 * 119.99800 * 359.72592 * 16 15 13 18 18 C 1.38808 * 120.00286 * 179.97438 * 16 15 13 19 19 N 1.31614 * 120.00177 * 179.72315 * 18 16 15 20 20 Si 1.86802 * 119.99745 * 359.72790 * 18 16 15 21 21 H 1.48499 * 109.47304 * 89.99926 * 20 18 16 22 22 H 1.48508 * 109.46892 * 209.99999 * 20 18 16 23 23 H 1.48503 * 109.47092 * 329.99716 * 20 18 16 24 24 C 1.47019 * 125.65250 * 355.32565 * 8 6 5 25 25 C 1.53000 * 109.46835 * 62.92310 * 5 4 2 26 26 C 1.53002 * 109.47368 * 60.00143 * 25 5 4 27 27 C 1.52997 * 109.47100 * 60.00164 * 26 25 5 28 28 C 1.53004 * 109.46914 * 299.99775 * 27 26 25 29 29 C 1.52999 * 109.47167 * 182.92018 * 5 4 2 30 30 H 1.09003 * 109.46950 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46867 * 299.99549 * 1 2 3 32 32 H 1.09000 * 109.47376 * 59.99686 * 1 2 3 33 33 H 0.97005 * 120.00263 * 354.82211 * 4 2 1 34 34 H 1.08999 * 110.36690 * 322.92765 * 9 8 6 35 35 H 1.09000 * 110.36746 * 85.14948 * 9 8 6 36 36 H 1.09000 * 109.47661 * 172.03915 * 12 10 9 37 37 H 1.09003 * 109.47135 * 292.04151 * 12 10 9 38 38 H 1.09005 * 109.47336 * 52.03764 * 12 10 9 39 39 H 0.96994 * 120.00311 * 22.55631 * 15 13 10 40 40 H 0.96998 * 119.99922 * 179.97438 * 19 18 16 41 41 H 1.09005 * 109.87852 * 59.55472 * 24 8 6 42 42 H 1.09000 * 109.88504 * 298.39350 * 24 8 6 43 43 H 1.09000 * 109.47260 * 180.02562 * 25 5 4 44 44 H 1.09000 * 109.47442 * 299.99815 * 25 5 4 45 45 H 1.08994 * 109.47084 * 299.99622 * 26 25 5 46 46 H 1.08998 * 109.46823 * 180.02562 * 26 25 5 47 47 H 1.09004 * 109.47104 * 180.02562 * 27 26 25 48 48 H 1.08994 * 109.47595 * 59.99770 * 27 26 25 49 49 H 1.08991 * 109.47467 * 300.00226 * 28 27 26 50 50 H 1.08998 * 109.47300 * 179.97438 * 28 27 26 51 51 H 1.08994 * 109.47289 * 60.00443 * 29 5 4 52 52 H 1.09007 * 109.47217 * 180.02562 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6414 -1.1698 -0.1150 6 6 4.0476 -0.4524 -1.3766 7 8 5.0289 0.2602 -1.3797 8 7 3.3204 -0.6030 -2.5013 9 6 3.5457 0.1099 -3.7718 10 6 2.1689 0.0859 -4.4921 11 1 1.5130 0.8670 -4.1078 12 6 2.3356 0.2096 -6.0079 13 6 1.6449 -1.3217 -4.1033 14 1 0.5553 -1.3460 -4.1210 15 7 2.1989 -2.3451 -4.9932 16 6 1.5524 -3.5426 -5.1457 17 1 0.6365 -3.7343 -4.6065 18 6 2.0770 -4.5121 -5.9893 19 7 1.4586 -5.6651 -6.1317 20 14 3.6609 -4.1802 -6.9224 21 1 4.8192 -4.6201 -6.1038 22 1 3.6469 -4.9306 -8.2039 23 1 3.7757 -2.7262 -7.2015 24 6 2.1717 -1.5060 -2.6646 25 6 4.2490 -0.4573 1.0950 26 6 3.8366 -1.1855 2.3758 27 6 4.3419 -2.6289 2.3271 28 6 3.7341 -3.3414 1.1171 29 6 4.1466 -2.6131 -0.1637 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.6988 -2.0056 0.0749 34 1 3.8554 1.1373 -3.5806 35 1 4.2967 -0.4072 -4.3690 36 1 1.3733 0.0486 -6.4937 37 1 2.7041 1.2058 -6.2529 38 1 3.0484 -0.5374 -6.3573 39 1 3.0236 -2.1744 -5.4744 40 1 1.8250 -6.3424 -6.7215 41 1 1.3920 -1.2472 -1.9482 42 1 2.4876 -2.5385 -2.5149 43 1 5.3356 -0.4588 1.0096 44 1 3.8891 0.5710 1.1297 45 1 2.7500 -1.1836 2.4610 46 1 4.2691 -0.6777 3.2378 47 1 4.0476 -3.1478 3.2394 48 1 5.4285 -2.6308 2.2419 49 1 2.6476 -3.3395 1.2023 50 1 4.0944 -4.3695 1.0821 51 1 3.7137 -3.1207 -1.0257 52 1 5.2333 -2.6151 -0.2485 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717281908.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:43 Heat of formation + Delta-G solvation = -57.557665 kcal Electronic energy + Delta-G solvation = -32725.568847 eV Core-core repulsion = 28725.140842 eV Total energy + Delta-G solvation = -4000.428006 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.28842 -39.05261 -38.19204 -37.18141 -34.33800 -33.78396 -32.31959 -31.04734 -30.97678 -30.79590 -28.70595 -28.13338 -26.40884 -23.96195 -23.19643 -22.84191 -21.84265 -21.12625 -19.70810 -19.47108 -18.93270 -17.92399 -17.15895 -16.88362 -16.07644 -15.80500 -15.52209 -15.09605 -14.55431 -14.49269 -14.30938 -14.06449 -13.98802 -13.82269 -13.30078 -13.05994 -12.90173 -12.79642 -12.74723 -12.54770 -12.39967 -12.26928 -12.14770 -12.09497 -11.96471 -11.76933 -11.47737 -11.27352 -11.09469 -10.87958 -10.75638 -10.75086 -10.55947 -10.42771 -10.31123 -10.06414 -9.84496 -9.66575 -9.64242 -9.16946 -8.83446 -8.25004 -7.40953 -5.89454 -3.25927 2.55559 2.73312 3.17557 3.28969 3.32203 3.32807 3.38811 4.45163 4.48470 4.52842 4.59713 4.74167 4.80068 4.98179 5.03255 5.07243 5.08361 5.10786 5.15596 5.27069 5.30108 5.32519 5.33590 5.47503 5.48955 5.58984 5.63926 5.69074 5.78397 5.81896 5.85619 5.90340 5.93225 5.97573 5.99808 6.05603 6.09986 6.15597 6.18193 6.25324 6.32650 6.38188 6.40109 6.55849 6.63607 6.69702 7.40142 7.84581 7.86885 8.15750 8.29461 8.43189 9.06866 9.79799 9.98923 11.28248 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012591 B = 0.004416 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.248420 B = 6339.484195 C = 7021.978105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.511 3.489 3 O -0.533 6.533 4 N -0.718 5.718 5 C 0.174 3.826 6 C 0.535 3.465 7 O -0.545 6.545 8 N -0.602 5.602 9 C 0.114 3.886 10 C -0.116 4.116 11 H 0.082 0.918 12 C -0.132 4.132 13 C 0.177 3.823 14 H 0.077 0.923 15 N -0.736 5.736 16 C -0.249 4.249 17 H 0.092 0.908 18 C 0.012 3.988 19 N -0.929 5.929 20 Si 0.878 3.122 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.276 1.276 24 C 0.071 3.929 25 C -0.114 4.114 26 C -0.113 4.113 27 C -0.121 4.121 28 C -0.115 4.115 29 C -0.124 4.124 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.404 0.596 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.363 0.637 40 H 0.260 0.740 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.064 0.936 50 H 0.071 0.929 51 H 0.082 0.918 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.545 7.917 15.075 17.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.299 3.701 3 O -0.409 6.409 4 N -0.374 5.374 5 C 0.085 3.915 6 C 0.322 3.678 7 O -0.422 6.422 8 N -0.334 5.334 9 C -0.008 4.008 10 C -0.136 4.136 11 H 0.100 0.900 12 C -0.190 4.190 13 C 0.065 3.935 14 H 0.095 0.905 15 N -0.379 5.379 16 C -0.379 4.379 17 H 0.110 0.890 18 C -0.185 4.185 19 N -0.576 5.576 20 Si 0.708 3.292 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.202 1.202 24 C -0.055 4.055 25 C -0.153 4.153 26 C -0.151 4.151 27 C -0.159 4.159 28 C -0.152 4.152 29 C -0.162 4.162 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.115 0.885 33 H 0.241 0.759 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.198 0.802 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.105 0.895 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.082 0.918 49 H 0.082 0.918 50 H 0.090 0.910 51 H 0.101 0.899 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.290 8.845 15.104 17.505 hybrid contribution 0.880 -0.473 -0.778 1.266 sum 1.170 8.372 14.326 16.634 Atomic orbital electron populations 1.21885 0.91547 1.04456 1.05298 1.20795 0.90621 0.83493 0.75200 1.90738 1.70344 1.31261 1.48512 1.46351 1.06373 1.09317 1.75368 1.20420 0.80882 0.96771 0.93470 1.20225 0.82586 0.81384 0.83583 1.90653 1.27038 1.39772 1.84750 1.48322 1.31915 1.42240 1.10973 1.22300 0.97339 0.96839 0.84351 1.22726 0.96018 0.98562 0.96290 0.89981 1.21564 1.02829 1.00680 0.93890 1.21192 0.97227 0.87333 0.87721 0.90485 1.42785 1.28072 1.14876 1.52129 1.19029 1.06407 0.89641 1.22784 0.89018 1.24624 0.98251 0.95979 0.99608 1.69683 1.40403 1.06046 1.41489 0.86673 0.84816 0.77546 0.80126 1.21107 1.21623 1.20212 1.23402 0.87630 0.93962 1.00498 1.21740 1.01189 1.00615 0.91711 1.21484 1.00994 0.95356 0.97260 1.21583 1.00738 0.95712 0.97837 1.21502 1.00782 0.99235 0.93711 1.21839 1.02661 0.92100 0.99643 0.90332 0.88922 0.88493 0.75903 0.91279 0.91915 0.91714 0.93353 0.92116 0.80233 0.92941 0.92157 0.90451 0.90470 0.89533 0.92055 0.91898 0.91932 0.91813 0.91767 0.91025 0.89907 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.08 36.01 0.36 -1.04 16 2 C 0.51 6.20 5.83 -10.99 -0.06 6.13 16 3 O -0.53 -8.84 14.34 5.56 0.08 -8.76 16 4 N -0.72 -7.81 1.88 -48.68 -0.09 -7.90 16 5 C 0.17 2.30 0.29 -132.97 -0.04 2.26 16 6 C 0.54 9.29 5.31 -10.98 -0.06 9.23 16 7 O -0.55 -11.30 16.34 5.56 0.09 -11.21 16 8 N -0.60 -10.02 3.22 -170.22 -0.55 -10.57 16 9 C 0.11 1.90 6.35 -2.27 -0.01 1.89 16 10 C -0.12 -1.75 3.53 -88.21 -0.31 -2.07 16 11 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 12 C -0.13 -1.96 8.86 37.16 0.33 -1.63 16 13 C 0.18 3.01 3.36 -66.10 -0.22 2.79 16 14 H 0.08 1.29 8.11 -51.93 -0.42 0.87 16 15 N -0.74 -15.60 4.36 -51.66 -0.23 -15.83 16 16 C -0.25 -6.34 10.45 -15.06 -0.16 -6.50 16 17 H 0.09 2.47 8.06 -52.48 -0.42 2.05 16 18 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 19 N -0.93 -27.50 13.97 55.49 0.78 -26.73 16 20 Si 0.88 21.18 27.73 -169.99 -4.71 16.46 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.26 6.53 56.52 0.37 -5.89 16 24 C 0.07 1.10 5.44 -3.07 -0.02 1.08 16 25 C -0.11 -1.49 4.05 -26.73 -0.11 -1.60 16 26 C -0.11 -1.11 5.77 -26.73 -0.15 -1.27 16 27 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 28 C -0.11 -1.02 5.75 -26.73 -0.15 -1.18 16 29 C -0.12 -1.45 4.75 -26.73 -0.13 -1.58 16 30 H 0.08 0.46 7.92 -51.93 -0.41 0.05 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.40 3.43 7.01 -40.82 -0.29 3.14 16 34 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 35 H 0.06 1.10 8.00 -51.93 -0.42 0.68 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 1.02 6.44 -51.93 -0.33 0.69 16 39 H 0.36 7.90 4.08 -40.82 -0.17 7.73 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.06 0.79 4.82 -51.93 -0.25 0.54 16 42 H 0.08 1.31 6.65 -51.93 -0.35 0.97 16 43 H 0.08 1.08 7.89 -51.93 -0.41 0.67 16 44 H 0.09 1.37 6.21 -51.93 -0.32 1.04 16 45 H 0.06 0.58 7.60 -51.93 -0.39 0.19 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.06 0.50 6.80 -51.93 -0.35 0.15 16 50 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.08 1.05 6.61 -51.93 -0.34 0.71 16 52 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 LS Contribution 387.87 15.07 5.85 5.85 Total: -1.00 -33.33 387.87 -8.47 -41.80 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -8.69 Total: 11.33 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -0.99 Total: 5.55 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: -0.09 Total: -61.02 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: 0.17 Total: -19.97 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.71 Total: 16.46 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.33 -8.47 -41.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717281908.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.759 kcal (2) G-P(sol) polarization free energy of solvation -33.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds