Wall clock time and date at job start Tue Mar 31 2020 20:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47261 * 2 1 4 4 C 1.50694 * 109.47216 * 239.99590 * 2 1 3 5 5 O 1.21288 * 120.00227 * 255.95735 * 4 2 1 6 6 N 1.34775 * 120.00184 * 75.95394 * 4 2 1 7 7 C 1.47432 * 125.64802 * 354.84235 * 6 4 2 8 8 C 1.54910 * 104.83143 * 204.09146 * 7 6 4 9 9 C 1.55154 * 101.58001 * 322.98688 * 8 7 6 10 10 C 1.47020 * 125.65032 * 174.79175 * 6 4 2 11 11 H 1.09006 * 109.88351 * 59.41305 * 10 6 4 12 12 C 1.52992 * 109.88578 * 298.39884 * 10 6 4 13 13 N 1.46906 * 109.47426 * 173.81158 * 12 10 6 14 14 C 1.46895 * 110.99887 * 287.94516 * 13 12 10 15 15 C 1.46900 * 110.99738 * 163.99174 * 13 12 10 16 16 C 1.50710 * 109.46724 * 190.00131 * 15 13 12 17 17 O 1.21290 * 119.99861 * 359.97438 * 16 15 13 18 18 N 1.34774 * 119.99956 * 180.02562 * 16 15 13 19 19 C 1.37094 * 119.99956 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00301 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00127 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00319 * 180.02562 * 21 19 18 23 23 Si 1.86808 * 119.99916 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47014 * 90.00128 * 23 21 19 25 25 H 1.48498 * 109.46971 * 210.00229 * 23 21 19 26 26 H 1.48500 * 109.46909 * 330.00355 * 23 21 19 27 27 C 1.53002 * 109.46894 * 119.99838 * 2 1 3 28 28 C 1.53007 * 117.49828 * 253.68310 * 27 2 1 29 29 C 1.53005 * 117.49873 * 185.02372 * 27 2 1 30 30 H 1.08997 * 109.47184 * 185.88516 * 1 2 3 31 31 H 1.08999 * 109.47072 * 305.88860 * 1 2 3 32 32 H 1.08997 * 109.46579 * 65.88464 * 1 2 3 33 33 H 1.09000 * 110.35847 * 322.92402 * 7 6 4 34 34 H 1.08992 * 110.36798 * 85.13841 * 7 6 4 35 35 H 1.08993 * 111.00772 * 81.05744 * 8 7 6 36 36 H 1.08999 * 110.99915 * 204.87924 * 8 7 6 37 37 H 1.09004 * 110.72016 * 277.14118 * 9 8 7 38 38 H 1.08997 * 110.72010 * 153.87135 * 9 8 7 39 39 H 1.09002 * 109.47261 * 53.80855 * 12 10 6 40 40 H 1.09000 * 109.47303 * 293.81132 * 12 10 6 41 41 H 1.08998 * 109.47235 * 292.56140 * 14 13 12 42 42 H 1.09001 * 109.47174 * 52.56387 * 14 13 12 43 43 H 1.09003 * 109.46935 * 172.55710 * 14 13 12 44 44 H 1.09002 * 109.47596 * 70.00468 * 15 13 12 45 45 H 1.09001 * 109.47777 * 309.99810 * 15 13 12 46 46 H 0.97004 * 119.99631 * 359.97438 * 18 16 15 47 47 H 0.96999 * 120.00369 * 179.97438 * 22 21 19 48 48 H 1.09002 * 115.55189 * 39.35487 * 27 2 1 49 49 H 1.09003 * 117.49636 * 359.97438 * 28 27 2 50 50 H 1.08998 * 117.49678 * 145.01608 * 28 27 2 51 51 H 1.08994 * 117.49645 * 214.97605 * 29 27 2 52 52 H 1.08999 * 117.49480 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.4748 -1.8363 -1.1424 6 7 1.9899 -0.0949 -2.4286 7 6 1.3834 1.2218 -2.6971 8 6 1.0360 1.1979 -4.2066 9 6 2.2370 0.4076 -4.7901 10 6 2.5417 -0.6246 -3.6841 11 1 2.0700 -1.5778 -3.9234 12 6 4.0542 -0.8121 -3.5497 13 7 4.5739 -1.4779 -4.7516 14 6 4.1761 -2.8916 -4.7838 15 6 6.0337 -1.3396 -4.8404 16 6 6.5017 -1.8130 -6.1925 17 8 5.6983 -2.2254 -7.0022 18 7 7.8131 -1.7789 -6.5016 19 6 8.2388 -2.2091 -7.7317 20 1 7.5234 -2.5756 -8.4530 21 6 9.5909 -2.1745 -8.0502 22 7 9.9990 -2.5863 -9.2295 23 14 10.8285 -1.5412 -6.8024 24 1 11.3089 -2.6697 -5.9651 25 1 11.9787 -0.9277 -7.5135 26 1 10.1815 -0.5229 -5.9365 27 6 2.0400 -0.7212 1.2493 28 6 2.6349 0.1373 2.3673 29 6 3.5501 -0.7260 1.4953 30 1 -0.3633 -1.0222 0.1054 31 1 -0.3633 0.6024 0.8326 32 1 -0.3632 0.4199 -0.9380 33 1 0.4795 1.3514 -2.1018 34 1 2.0957 2.0184 -2.4826 35 1 0.0986 0.6708 -4.3835 36 1 0.9970 2.2079 -4.6144 37 1 3.0911 1.0659 -4.9491 38 1 1.9560 -0.0920 -5.7172 39 1 4.2680 -1.4246 -2.6738 40 1 4.5324 0.1610 -3.4380 41 1 4.6776 -3.4286 -3.9787 42 1 3.0965 -2.9683 -4.6545 43 1 4.4590 -3.3269 -5.7423 44 1 6.5037 -1.9409 -4.0622 45 1 6.3084 -0.2933 -4.7067 46 1 8.4556 -1.4494 -5.8538 47 1 10.9428 -2.5619 -9.4519 48 1 1.4797 -1.6096 1.5409 49 1 2.6634 1.2160 2.2126 50 1 2.4663 -0.1864 3.3944 51 1 3.9832 -1.6174 1.9491 52 1 4.1802 -0.2157 0.7669 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717362437.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:52 Heat of formation + Delta-G solvation = -30.386041 kcal Electronic energy + Delta-G solvation = -30226.347407 eV Core-core repulsion = 26227.097652 eV Total energy + Delta-G solvation = -3999.249756 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.70513 -38.85904 -38.24100 -36.91881 -36.13156 -33.87475 -33.10775 -31.64241 -31.34870 -30.29978 -27.89060 -26.26506 -25.43448 -24.50663 -23.38396 -22.61509 -21.91173 -21.63856 -20.16581 -19.33909 -18.96090 -18.18412 -17.30516 -16.93450 -16.06781 -15.64757 -15.27891 -15.19832 -15.04537 -14.81855 -14.55725 -14.42358 -14.06362 -13.77686 -13.41493 -13.36524 -13.10358 -12.89871 -12.87582 -12.73290 -12.38118 -12.29545 -12.08632 -11.90934 -11.83772 -11.64259 -11.43641 -11.35693 -11.30105 -11.27384 -10.99219 -10.86781 -10.71571 -10.67585 -10.56904 -10.42417 -9.94791 -9.73558 -9.50572 -8.87794 -8.46931 -8.14617 -7.86754 -6.28094 -3.79111 2.47201 2.67877 3.04920 3.09249 3.17029 3.51765 3.78678 4.06110 4.13241 4.16315 4.23026 4.34613 4.50314 4.59854 4.69225 4.77057 4.84162 4.85779 4.91747 4.93397 5.08505 5.12734 5.23260 5.24745 5.32617 5.34137 5.35787 5.47700 5.52822 5.58742 5.64391 5.66520 5.70618 5.73399 5.79021 5.82360 5.83249 5.91322 5.93855 5.94755 6.00432 6.05781 6.18193 6.30295 6.61471 7.21493 7.33689 7.39455 7.62337 8.03933 8.18259 8.64091 8.98869 9.46178 9.87992 10.85137 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015879 B = 0.002482 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.881519 B =11277.761490 C =12271.331872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.076 4.076 3 H 0.091 0.909 4 C 0.532 3.468 5 O -0.527 6.527 6 N -0.617 5.617 7 C 0.094 3.906 8 C -0.137 4.137 9 C -0.112 4.112 10 C 0.143 3.857 11 H 0.079 0.921 12 C 0.046 3.954 13 N -0.512 5.512 14 C 0.022 3.978 15 C 0.044 3.956 16 C 0.456 3.544 17 O -0.558 6.558 18 N -0.593 5.593 19 C -0.302 4.302 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.883 5.883 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.132 4.132 28 C -0.180 4.180 29 C -0.166 4.166 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.045 0.955 40 H 0.069 0.931 41 H 0.017 0.983 42 H 0.059 0.941 43 H 0.096 0.904 44 H 0.048 0.952 45 H 0.087 0.913 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.109 0.891 49 H 0.093 0.907 50 H 0.095 0.905 51 H 0.095 0.905 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.599 11.267 21.977 30.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.097 4.097 3 H 0.109 0.891 4 C 0.320 3.680 5 O -0.403 6.403 6 N -0.352 5.352 7 C -0.028 4.028 8 C -0.175 4.175 9 C -0.150 4.150 10 C 0.040 3.960 11 H 0.097 0.903 12 C -0.084 4.084 13 N -0.237 5.237 14 C -0.125 4.125 15 C -0.087 4.087 16 C 0.241 3.759 17 O -0.440 6.440 18 N -0.233 5.233 19 C -0.431 4.431 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.523 5.523 23 Si 0.705 3.295 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.151 4.151 28 C -0.217 4.217 29 C -0.203 4.203 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.035 0.965 42 H 0.077 0.923 43 H 0.115 0.885 44 H 0.066 0.934 45 H 0.105 0.895 46 H 0.202 0.798 47 H 0.083 0.917 48 H 0.127 0.873 49 H 0.111 0.889 50 H 0.113 0.887 51 H 0.114 0.886 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.928 10.512 20.985 30.152 hybrid contribution 1.640 0.186 1.608 2.304 sum -17.288 10.698 22.593 30.393 Atomic orbital electron populations 1.21790 0.92438 1.03149 1.02600 1.20866 0.97632 0.99633 0.91585 0.89064 1.20292 0.78446 0.86186 0.83093 1.90719 1.45899 1.18270 1.85365 1.48641 1.58017 1.20415 1.08152 1.22462 0.97882 0.85182 0.97314 1.22831 0.99242 1.01565 0.93826 1.22568 0.97805 0.96983 0.97673 1.21531 0.93519 0.98195 0.82789 0.90348 1.22426 0.94531 0.99269 0.92143 1.61506 1.10031 1.15326 1.36802 1.22577 0.99858 0.87290 1.02818 1.21911 0.88444 1.01620 0.96748 1.19628 0.82727 0.84616 0.88909 1.90515 1.52967 1.49790 1.50686 1.42216 1.06271 1.58897 1.15880 1.19420 0.93662 1.39152 0.90874 0.86270 1.25029 0.96972 0.97715 0.96489 1.69619 1.16247 1.46487 1.19956 0.86682 0.81949 0.79413 0.81412 1.19695 1.20212 1.19509 1.21954 0.96900 1.01065 0.95165 1.23077 1.04810 0.97824 0.95995 1.22849 0.92769 1.02094 1.02608 0.91788 0.91212 0.91780 0.90381 0.91380 0.90694 0.89772 0.90125 0.89387 0.93706 0.91233 0.96485 0.92254 0.88518 0.93438 0.89489 0.79772 0.91671 0.87335 0.88871 0.88666 0.88644 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.02 37.16 0.34 -0.54 16 2 C -0.08 -0.61 2.19 -91.77 -0.20 -0.81 16 3 H 0.09 0.61 7.72 -51.93 -0.40 0.21 16 4 C 0.53 6.11 6.58 -10.99 -0.07 6.04 16 5 O -0.53 -8.18 15.06 5.55 0.08 -8.10 16 6 N -0.62 -6.35 3.07 -163.02 -0.50 -6.85 16 7 C 0.09 0.65 6.44 -2.52 -0.02 0.64 16 8 C -0.14 -0.96 7.09 -24.58 -0.17 -1.14 16 9 C -0.11 -1.15 6.31 -24.90 -0.16 -1.31 16 10 C 0.14 1.73 2.91 -66.96 -0.19 1.54 16 11 H 0.08 1.09 6.45 -51.93 -0.33 0.76 16 12 C 0.05 0.64 4.39 -3.82 -0.02 0.62 16 13 N -0.51 -8.59 4.28 -244.37 -1.05 -9.64 16 14 C 0.02 0.39 9.05 60.06 0.54 0.93 16 15 C 0.04 0.79 5.44 -4.97 -0.03 0.76 16 16 C 0.46 10.53 7.53 -10.98 -0.08 10.44 16 17 O -0.56 -14.93 13.88 5.55 0.08 -14.85 16 18 N -0.59 -14.37 5.09 -10.96 -0.06 -14.43 16 19 C -0.30 -8.63 10.16 -14.93 -0.15 -8.78 16 20 H 0.12 3.87 7.39 -52.49 -0.39 3.49 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -26.03 13.96 55.50 0.77 -25.26 16 23 Si 0.88 19.66 27.74 -169.99 -4.71 14.95 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.27 -5.51 6.52 56.52 0.37 -5.14 16 27 C -0.13 -1.13 4.47 -90.61 -0.40 -1.54 16 28 C -0.18 -1.24 10.18 -26.69 -0.27 -1.51 16 29 C -0.17 -1.52 9.74 -26.69 -0.26 -1.78 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.35 5.73 -51.93 -0.30 0.05 16 33 H 0.08 0.40 5.43 -51.93 -0.28 0.12 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.87 7.75 -51.93 -0.40 0.47 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.04 0.71 6.77 -51.93 -0.35 0.35 16 40 H 0.07 0.90 7.66 -51.93 -0.40 0.50 16 41 H 0.02 0.29 8.10 -51.93 -0.42 -0.13 16 42 H 0.06 0.93 6.38 -51.93 -0.33 0.60 16 43 H 0.10 1.97 5.95 -51.93 -0.31 1.66 16 44 H 0.05 0.78 8.09 -51.93 -0.42 0.36 16 45 H 0.09 1.35 7.86 -51.93 -0.41 0.94 16 46 H 0.37 7.93 5.76 -40.82 -0.24 7.69 16 47 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 48 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 49 H 0.09 0.55 8.08 -51.93 -0.42 0.13 16 50 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 52 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 405.64 15.07 6.11 6.11 Total: -1.00 -34.14 405.64 -9.31 -43.45 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -8.79 Total: 10.02 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -1.25 Total: 4.58 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -0.83 Total: -56.17 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: 0.16 Total: -22.94 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.71 Total: 14.95 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.14 -9.31 -43.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717362437.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.068 kcal (2) G-P(sol) polarization free energy of solvation -34.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds