Wall clock time and date at job start Tue Mar 31 2020 20:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47261 * 2 1 4 4 C 1.50694 * 109.47216 * 239.99590 * 2 1 3 5 5 O 1.21288 * 120.00227 * 255.95735 * 4 2 1 6 6 N 1.34775 * 120.00184 * 75.95394 * 4 2 1 7 7 C 1.47432 * 125.64802 * 354.84235 * 6 4 2 8 8 C 1.54910 * 104.83143 * 204.09146 * 7 6 4 9 9 C 1.55154 * 101.58001 * 322.98688 * 8 7 6 10 10 C 1.47020 * 125.65032 * 174.79175 * 6 4 2 11 11 H 1.09006 * 109.88351 * 59.41305 * 10 6 4 12 12 C 1.52992 * 109.88578 * 298.39884 * 10 6 4 13 13 N 1.46906 * 109.47426 * 173.81158 * 12 10 6 14 14 C 1.46895 * 110.99887 * 287.94516 * 13 12 10 15 15 C 1.46900 * 110.99738 * 163.99174 * 13 12 10 16 16 C 1.50710 * 109.46724 * 190.00131 * 15 13 12 17 17 O 1.21290 * 119.99861 * 359.97438 * 16 15 13 18 18 N 1.34774 * 119.99956 * 180.02562 * 16 15 13 19 19 C 1.37094 * 119.99956 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00301 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00127 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00319 * 180.02562 * 21 19 18 23 23 Si 1.86808 * 119.99916 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47014 * 90.00128 * 23 21 19 25 25 H 1.48498 * 109.46971 * 210.00229 * 23 21 19 26 26 H 1.48500 * 109.46909 * 330.00355 * 23 21 19 27 27 C 1.53002 * 109.46894 * 119.99838 * 2 1 3 28 28 C 1.53007 * 117.49828 * 253.68310 * 27 2 1 29 29 C 1.53005 * 117.49873 * 185.02372 * 27 2 1 30 30 H 1.08997 * 109.47184 * 185.88516 * 1 2 3 31 31 H 1.08999 * 109.47072 * 305.88860 * 1 2 3 32 32 H 1.08997 * 109.46579 * 65.88464 * 1 2 3 33 33 H 1.09000 * 110.35847 * 322.92402 * 7 6 4 34 34 H 1.08992 * 110.36798 * 85.13841 * 7 6 4 35 35 H 1.08993 * 111.00772 * 81.05744 * 8 7 6 36 36 H 1.08999 * 110.99915 * 204.87924 * 8 7 6 37 37 H 1.09004 * 110.72016 * 277.14118 * 9 8 7 38 38 H 1.08997 * 110.72010 * 153.87135 * 9 8 7 39 39 H 1.09002 * 109.47261 * 53.80855 * 12 10 6 40 40 H 1.09000 * 109.47303 * 293.81132 * 12 10 6 41 41 H 1.08998 * 109.47235 * 292.56140 * 14 13 12 42 42 H 1.09001 * 109.47174 * 52.56387 * 14 13 12 43 43 H 1.09003 * 109.46935 * 172.55710 * 14 13 12 44 44 H 1.09002 * 109.47596 * 70.00468 * 15 13 12 45 45 H 1.09001 * 109.47777 * 309.99810 * 15 13 12 46 46 H 0.97004 * 119.99631 * 359.97438 * 18 16 15 47 47 H 0.96999 * 120.00369 * 179.97438 * 22 21 19 48 48 H 1.09002 * 115.55189 * 39.35487 * 27 2 1 49 49 H 1.09003 * 117.49636 * 359.97438 * 28 27 2 50 50 H 1.08998 * 117.49678 * 145.01608 * 28 27 2 51 51 H 1.08994 * 117.49645 * 214.97605 * 29 27 2 52 52 H 1.08999 * 117.49480 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.4748 -1.8363 -1.1424 6 7 1.9899 -0.0949 -2.4286 7 6 1.3834 1.2218 -2.6971 8 6 1.0360 1.1979 -4.2066 9 6 2.2370 0.4076 -4.7901 10 6 2.5417 -0.6246 -3.6841 11 1 2.0700 -1.5778 -3.9234 12 6 4.0542 -0.8121 -3.5497 13 7 4.5739 -1.4779 -4.7516 14 6 4.1761 -2.8916 -4.7838 15 6 6.0337 -1.3396 -4.8404 16 6 6.5017 -1.8130 -6.1925 17 8 5.6983 -2.2254 -7.0022 18 7 7.8131 -1.7789 -6.5016 19 6 8.2388 -2.2091 -7.7317 20 1 7.5234 -2.5756 -8.4530 21 6 9.5909 -2.1745 -8.0502 22 7 9.9990 -2.5863 -9.2295 23 14 10.8285 -1.5412 -6.8024 24 1 11.3089 -2.6697 -5.9651 25 1 11.9787 -0.9277 -7.5135 26 1 10.1815 -0.5229 -5.9365 27 6 2.0400 -0.7212 1.2493 28 6 2.6349 0.1373 2.3673 29 6 3.5501 -0.7260 1.4953 30 1 -0.3633 -1.0222 0.1054 31 1 -0.3633 0.6024 0.8326 32 1 -0.3632 0.4199 -0.9380 33 1 0.4795 1.3514 -2.1018 34 1 2.0957 2.0184 -2.4826 35 1 0.0986 0.6708 -4.3835 36 1 0.9970 2.2079 -4.6144 37 1 3.0911 1.0659 -4.9491 38 1 1.9560 -0.0920 -5.7172 39 1 4.2680 -1.4246 -2.6738 40 1 4.5324 0.1610 -3.4380 41 1 4.6776 -3.4286 -3.9787 42 1 3.0965 -2.9683 -4.6545 43 1 4.4590 -3.3269 -5.7423 44 1 6.5037 -1.9409 -4.0622 45 1 6.3084 -0.2933 -4.7067 46 1 8.4556 -1.4494 -5.8538 47 1 10.9428 -2.5619 -9.4519 48 1 1.4797 -1.6096 1.5409 49 1 2.6634 1.2160 2.2126 50 1 2.4663 -0.1864 3.3944 51 1 3.9832 -1.6174 1.9491 52 1 4.1802 -0.2157 0.7669 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717362437.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:51 Heat of formation + Delta-G solvation = -54.438347 kcal Electronic energy + Delta-G solvation = -30227.390393 eV Core-core repulsion = 26227.097652 eV Total energy + Delta-G solvation = -4000.292742 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.54558 -40.49324 -39.23028 -37.78737 -37.42586 -35.90645 -33.82686 -33.74822 -32.06275 -31.30595 -29.42753 -27.48270 -26.42541 -25.90902 -24.29003 -23.24755 -23.01055 -22.36744 -21.27606 -21.01031 -20.23234 -19.71081 -18.12291 -18.03219 -17.43200 -16.86484 -16.64896 -16.42446 -16.13141 -15.93987 -15.60507 -15.35927 -15.27994 -15.21028 -14.84588 -14.43625 -14.31239 -14.20637 -13.90027 -13.76694 -13.48151 -13.32748 -13.15636 -13.06210 -12.76920 -12.69997 -12.65158 -12.42000 -12.40738 -12.39518 -12.03753 -11.99157 -11.91960 -11.79671 -11.54594 -11.48292 -11.33416 -11.04035 -10.56628 -10.42246 -10.24136 -9.66507 -9.27899 -8.41472 -6.01907 1.29108 1.34309 1.43081 1.63186 1.87333 1.94172 2.22131 2.61830 2.92049 3.14102 3.22588 3.52321 3.57859 3.67428 3.83486 3.87324 3.94515 4.07169 4.14679 4.21814 4.25454 4.28824 4.30775 4.35292 4.36187 4.40440 4.52665 4.54273 4.56263 4.62890 4.68921 4.78559 4.79984 4.92362 4.96827 5.02980 5.05341 5.07860 5.11949 5.18170 5.21235 5.24438 5.34544 5.38788 5.45413 5.52465 5.84369 5.95865 6.06382 6.58023 6.59466 6.88076 7.20130 7.39088 7.96064 8.76118 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015879 B = 0.002482 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.881519 B =11277.761490 C =12271.331872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.067 4.067 3 H 0.114 0.886 4 C 0.524 3.476 5 O -0.578 6.578 6 N -0.615 5.615 7 C 0.091 3.909 8 C -0.126 4.126 9 C -0.112 4.112 10 C 0.143 3.857 11 H 0.052 0.948 12 C 0.056 3.944 13 N -0.522 5.522 14 C 0.032 3.968 15 C 0.054 3.946 16 C 0.455 3.545 17 O -0.601 6.601 18 N -0.593 5.593 19 C -0.325 4.325 20 H 0.057 0.943 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.963 3.037 24 H -0.260 1.260 25 H -0.273 1.273 26 H -0.231 1.231 27 C -0.144 4.144 28 C -0.152 4.152 29 C -0.189 4.189 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.027 0.973 40 H 0.088 0.912 41 H 0.017 0.983 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.122 0.878 46 H 0.388 0.612 47 H 0.279 0.721 48 H 0.096 0.904 49 H 0.112 0.888 50 H 0.106 0.894 51 H 0.084 0.916 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.925 15.033 25.563 35.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.088 4.088 3 H 0.132 0.868 4 C 0.314 3.686 5 O -0.457 6.457 6 N -0.349 5.349 7 C -0.030 4.030 8 C -0.164 4.164 9 C -0.150 4.150 10 C 0.039 3.961 11 H 0.070 0.930 12 C -0.073 4.073 13 N -0.246 5.246 14 C -0.116 4.116 15 C -0.077 4.077 16 C 0.242 3.758 17 O -0.485 6.485 18 N -0.235 5.235 19 C -0.454 4.454 20 H 0.075 0.925 21 C -0.213 4.213 22 N -0.575 5.575 23 Si 0.783 3.217 24 H -0.185 1.185 25 H -0.198 1.198 26 H -0.155 1.155 27 C -0.162 4.162 28 C -0.189 4.189 29 C -0.226 4.226 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.121 0.879 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.126 0.874 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.045 0.955 40 H 0.106 0.894 41 H 0.036 0.964 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.140 0.860 46 H 0.224 0.776 47 H 0.088 0.912 48 H 0.115 0.885 49 H 0.130 0.870 50 H 0.124 0.876 51 H 0.103 0.897 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.294 14.320 24.589 34.379 hybrid contribution 1.630 -1.071 0.399 1.991 sum -17.664 13.249 24.987 33.345 Atomic orbital electron populations 1.21799 0.90810 1.02830 1.04148 1.20900 0.98795 0.99958 0.89195 0.86760 1.21042 0.77574 0.85763 0.84193 1.90696 1.48223 1.20623 1.86173 1.48734 1.57476 1.21529 1.07141 1.22748 0.99230 0.83606 0.97418 1.22832 0.97623 1.02236 0.93730 1.22502 0.99403 0.96694 0.96374 1.21394 0.92144 0.97968 0.84628 0.93021 1.22403 0.95854 0.99172 0.89838 1.61466 1.09681 1.14808 1.38694 1.22373 1.00547 0.87947 1.00715 1.21863 0.89055 1.03676 0.93107 1.20716 0.81932 0.82642 0.90466 1.90509 1.54128 1.51104 1.52762 1.42033 1.07205 1.59403 1.14810 1.18990 0.93411 1.41054 0.91969 0.92510 1.26085 0.99007 0.97172 0.99084 1.69798 1.17281 1.47637 1.22773 0.85392 0.78079 0.79792 0.78439 1.18479 1.19817 1.15478 1.22000 0.96172 1.01591 0.96458 1.23157 1.01538 0.98357 0.95802 1.22827 0.93223 1.02736 1.03845 0.93313 0.88902 0.90719 0.87886 0.89523 0.90497 0.87414 0.90233 0.91114 0.95477 0.89375 0.96410 0.91235 0.92004 0.91410 0.86002 0.77629 0.91154 0.88532 0.87008 0.87566 0.89714 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.02 71.98 0.65 -0.64 16 2 C -0.07 -0.91 2.19 -11.54 -0.03 -0.94 16 3 H 0.11 1.04 7.72 -2.39 -0.02 1.02 16 4 C 0.52 11.46 6.58 87.66 0.58 12.04 16 5 O -0.58 -18.28 15.06 -3.05 -0.05 -18.33 16 6 N -0.61 -11.51 3.07 -788.05 -2.42 -13.93 16 7 C 0.09 0.91 6.44 86.85 0.56 1.47 16 8 C -0.13 -1.39 7.09 31.99 0.23 -1.17 16 9 C -0.11 -2.14 6.31 31.78 0.20 -1.94 16 10 C 0.14 3.37 2.91 45.34 0.13 3.50 16 11 H 0.05 1.49 6.45 -2.38 -0.02 1.47 16 12 C 0.06 1.50 4.39 86.30 0.38 1.88 16 13 N -0.52 -17.37 4.28 -927.04 -3.97 -21.34 16 14 C 0.03 1.17 9.05 127.69 1.16 2.32 16 15 C 0.05 1.83 5.44 85.56 0.47 2.30 16 16 C 0.45 21.27 7.53 87.66 0.66 21.93 16 17 O -0.60 -33.80 13.88 -3.06 -0.04 -33.84 16 18 N -0.59 -28.73 5.09 -306.98 -1.56 -30.29 16 19 C -0.33 -19.33 10.16 84.04 0.85 -18.47 16 20 H 0.06 4.00 7.39 -2.91 -0.02 3.98 16 21 C -0.01 -0.84 5.50 84.93 0.47 -0.37 16 22 N -0.93 -56.96 13.96 21.66 0.30 -56.65 16 23 Si 0.96 39.55 27.74 68.60 1.90 41.45 16 24 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 26 H -0.23 -8.03 6.52 99.48 0.65 -7.38 16 27 C -0.14 -2.26 4.47 -10.79 -0.05 -2.31 16 28 C -0.15 -1.68 10.18 30.62 0.31 -1.37 16 29 C -0.19 -3.32 9.74 30.62 0.30 -3.02 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.60 16 31 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.07 0.53 5.73 -2.39 -0.01 0.52 16 33 H 0.10 0.56 5.43 -2.39 -0.01 0.55 16 34 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 36 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.08 1.55 7.75 -2.38 -0.02 1.53 16 38 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 39 H 0.03 0.84 6.77 -2.39 -0.02 0.82 16 40 H 0.09 2.04 7.66 -2.39 -0.02 2.02 16 41 H 0.02 0.62 8.10 -2.39 -0.02 0.60 16 42 H 0.07 2.31 6.38 -2.39 -0.02 2.30 16 43 H 0.06 2.67 5.95 -2.39 -0.01 2.66 16 44 H 0.07 2.08 8.09 -2.39 -0.02 2.06 16 45 H 0.12 3.33 7.86 -2.39 -0.02 3.31 16 46 H 0.39 15.72 5.76 -92.71 -0.53 15.19 16 47 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 48 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.11 0.85 8.08 -2.39 -0.02 0.83 16 50 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 51 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 52 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -82.18 405.64 1.35 -80.83 By element: Atomic # 1 Polarization: 36.56 SS G_CDS: 0.32 Total: 36.88 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: 6.86 Total: 15.21 kcal Atomic # 7 Polarization: -114.57 SS G_CDS: -7.65 Total: -122.21 kcal Atomic # 8 Polarization: -52.08 SS G_CDS: -0.09 Total: -52.17 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 1.90 Total: 41.45 kcal Total: -82.18 1.35 -80.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717362437.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.395 kcal (2) G-P(sol) polarization free energy of solvation -82.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds