Wall clock time and date at job start Tue Mar 31 2020 20:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47288 * 2 1 4 4 N 1.46500 * 109.47169 * 120.00325 * 2 1 3 5 5 C 1.34773 * 119.99996 * 274.99870 * 4 2 1 6 6 O 1.21277 * 120.00100 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00068 * 179.97438 * 5 4 2 8 8 H 1.09002 * 109.46959 * 60.00140 * 7 5 4 9 9 C 1.53000 * 109.47083 * 299.99925 * 7 5 4 10 10 C 1.52997 * 109.47078 * 180.02562 * 7 5 4 11 11 C 1.53779 * 113.61807 * 277.49806 * 10 7 5 12 12 C 1.53775 * 87.08445 * 220.02120 * 11 10 7 13 13 C 1.53780 * 87.08291 * 25.43110 * 12 11 10 14 14 C 1.53000 * 109.47150 * 240.00340 * 2 1 3 15 15 C 1.53937 * 113.73423 * 158.76836 * 14 2 1 16 16 N 1.48192 * 86.09918 * 221.95895 * 15 14 2 17 17 C 1.46899 * 111.07068 * 137.52146 * 16 15 14 18 18 C 1.50707 * 109.47127 * 90.56682 * 17 16 15 19 19 O 1.21291 * 120.00183 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99829 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99778 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00078 * 359.97438 * 21 20 18 23 23 C 1.38958 * 119.99852 * 179.97438 * 21 20 18 24 24 N 1.31405 * 119.99756 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99960 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47465 * 89.99806 * 25 23 21 27 27 H 1.48497 * 109.46901 * 209.99804 * 25 23 21 28 28 H 1.48504 * 109.47238 * 329.99640 * 25 23 21 29 29 C 1.47958 * 90.80104 * 24.59810 * 16 15 14 30 30 H 1.08994 * 109.47080 * 299.99921 * 1 2 3 31 31 H 1.09001 * 109.47089 * 59.99481 * 1 2 3 32 32 H 1.09002 * 109.47361 * 179.97438 * 1 2 3 33 33 H 0.96998 * 120.00098 * 94.99884 * 4 2 1 34 34 H 1.08992 * 109.47399 * 299.99938 * 9 7 5 35 35 H 1.09004 * 109.46724 * 60.00424 * 9 7 5 36 36 H 1.09001 * 109.47194 * 179.97438 * 9 7 5 37 37 H 1.09006 * 112.85292 * 48.80927 * 10 7 5 38 38 H 1.09003 * 113.61460 * 334.56934 * 11 10 7 39 39 H 1.08997 * 113.61480 * 105.47119 * 11 10 7 40 40 H 1.09008 * 113.61327 * 270.88310 * 12 11 10 41 41 H 1.08999 * 113.69441 * 139.99189 * 12 11 10 42 42 H 1.08996 * 113.61725 * 220.02384 * 13 12 11 43 43 H 1.08991 * 113.69226 * 89.12796 * 13 12 11 44 44 H 1.09006 * 112.94001 * 290.33139 * 14 2 1 45 45 H 1.09003 * 113.75874 * 336.23099 * 15 14 2 46 46 H 1.08992 * 113.76130 * 107.60289 * 15 14 2 47 47 H 1.09006 * 109.46787 * 210.55935 * 17 16 15 48 48 H 1.08998 * 109.47293 * 330.56525 * 17 16 15 49 49 H 0.97002 * 120.00400 * 359.97438 * 20 18 17 50 50 H 0.96999 * 119.99889 * 180.02562 * 24 23 21 51 51 H 1.08999 * 113.75818 * 221.08802 * 29 16 15 52 52 H 1.08999 * 113.85654 * 89.73717 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8582 1.1582 2.4118 7 6 2.6489 -0.7290 3.5877 8 1 3.6480 -1.1215 3.3985 9 6 1.7043 -1.8825 3.9313 10 6 2.6999 0.2539 4.7590 11 6 3.9698 1.1209 4.7810 12 6 3.9786 0.9305 6.3069 13 6 3.2015 -0.3751 6.0696 14 6 2.0400 -0.7212 -1.2493 15 6 3.4849 -0.3524 -1.6311 16 7 2.9994 -0.3201 -3.0309 17 6 3.5500 0.8337 -3.7544 18 6 4.8446 0.4396 -4.4176 19 8 5.2673 -0.6910 -4.2989 20 7 5.5332 1.3439 -5.1419 21 6 6.7112 0.9855 -5.7448 22 1 7.0875 -0.0212 -5.6391 23 6 7.4209 1.9177 -6.4920 24 7 8.5503 1.5743 -7.0695 25 14 6.7703 3.6592 -6.6744 26 1 7.3024 4.5041 -5.5752 27 1 7.2046 4.2155 -7.9809 28 1 5.2867 3.6424 -6.6120 29 6 1.6207 -0.0473 -2.5683 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 2.2490 -1.6318 1.1525 34 1 0.7052 -1.4900 4.1205 35 1 1.6676 -2.5829 3.0969 36 1 2.0675 -2.3968 4.8211 37 1 1.7781 0.8245 4.8733 38 1 4.8210 0.6612 4.2787 39 1 3.8001 2.1518 4.4705 40 1 3.4073 1.6873 6.8446 41 1 4.9741 0.7766 6.7233 42 1 2.4114 -0.5517 6.7995 43 1 3.8413 -1.2446 5.9197 44 1 1.8528 -1.7948 -1.2263 45 1 3.8042 0.6195 -1.2547 46 1 4.2071 -1.1444 -1.4337 47 1 2.8382 1.1605 -4.5125 48 1 3.7339 1.6480 -3.0536 49 1 5.1954 2.2482 -5.2366 50 1 9.0459 2.2251 -7.5908 51 1 0.8563 -0.5961 -3.1182 52 1 1.3918 1.0135 -2.4661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717552374.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:22 Heat of formation + Delta-G solvation = -24.680572 kcal Electronic energy + Delta-G solvation = -29352.483881 eV Core-core repulsion = 25353.481533 eV Total energy + Delta-G solvation = -3999.002348 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.78805 -40.02039 -38.58595 -37.88803 -35.40164 -33.91457 -33.51626 -31.68228 -31.16393 -29.49102 -26.56218 -26.35898 -25.64151 -25.55292 -24.32931 -23.37642 -21.59007 -20.56340 -19.74685 -19.53421 -19.29726 -18.31093 -17.30073 -16.77340 -16.11944 -15.76219 -15.51002 -15.25852 -15.15266 -15.00295 -14.86407 -14.40801 -14.04133 -13.63062 -13.45099 -13.17689 -13.13407 -12.93792 -12.83362 -12.68285 -12.63710 -12.52073 -12.44277 -12.18326 -11.95583 -11.89198 -11.56952 -11.51379 -11.17990 -11.01329 -10.83752 -10.75082 -10.70385 -10.60817 -10.57950 -10.44006 -9.95458 -9.80908 -9.53793 -9.30618 -8.78639 -8.26933 -8.14922 -6.28722 -3.79838 2.47506 2.90582 3.04075 3.08165 3.16236 3.76863 3.85520 4.12152 4.14638 4.27065 4.30106 4.34871 4.49893 4.56521 4.61406 4.72821 4.82574 4.95146 4.99419 5.03864 5.13650 5.16953 5.17860 5.31935 5.32839 5.36307 5.36945 5.42200 5.45717 5.48214 5.56876 5.57290 5.59795 5.61668 5.64816 5.71037 5.74491 5.83563 5.86730 5.95890 5.98072 5.98286 6.12753 6.22550 6.32917 6.49552 7.08100 7.30024 7.60933 8.05121 8.17020 8.63419 8.98216 9.45413 9.87548 10.84604 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013717 B = 0.002169 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.759957 B =12907.583979 C =13964.905298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.150 3.850 3 H 0.087 0.913 4 N -0.724 5.724 5 C 0.519 3.481 6 O -0.538 6.538 7 C -0.103 4.103 8 H 0.097 0.903 9 C -0.142 4.142 10 C -0.088 4.088 11 C -0.134 4.134 12 C -0.144 4.144 13 C -0.136 4.136 14 C -0.125 4.125 15 C 0.017 3.983 16 N -0.449 5.449 17 C 0.007 3.993 18 C 0.456 3.544 19 O -0.557 6.557 20 N -0.595 5.595 21 C -0.303 4.303 22 H 0.119 0.881 23 C 0.040 3.960 24 N -0.883 5.883 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.010 3.990 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.400 0.600 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.104 0.896 45 H 0.068 0.932 46 H 0.092 0.908 47 H 0.089 0.911 48 H 0.058 0.942 49 H 0.369 0.631 50 H 0.273 0.727 51 H 0.091 0.909 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.409 -2.909 24.320 30.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 H 0.105 0.895 4 N -0.375 5.375 5 C 0.305 3.695 6 O -0.415 6.415 7 C -0.125 4.125 8 H 0.115 0.885 9 C -0.200 4.200 10 C -0.107 4.107 11 C -0.172 4.172 12 C -0.181 4.181 13 C -0.173 4.173 14 C -0.144 4.144 15 C -0.111 4.111 16 N -0.171 5.171 17 C -0.125 4.125 18 C 0.241 3.759 19 O -0.438 6.438 20 N -0.235 5.235 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.523 5.523 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.120 4.120 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.234 0.766 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.115 0.885 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.122 0.878 45 H 0.086 0.914 46 H 0.110 0.890 47 H 0.107 0.893 48 H 0.076 0.924 49 H 0.202 0.798 50 H 0.083 0.917 51 H 0.110 0.890 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.991 -3.305 23.829 29.452 hybrid contribution -0.297 1.818 -0.041 1.842 sum -17.288 -1.487 23.789 29.445 Atomic orbital electron populations 1.22128 0.95063 1.02179 1.02492 1.21027 0.94112 0.97171 0.83188 0.89485 1.46100 1.67685 1.14120 1.09645 1.20646 0.77151 0.87247 0.84411 1.90689 1.49724 1.16028 1.85020 1.21384 1.01122 0.96851 0.93109 0.88459 1.21742 0.99273 0.96659 1.02285 1.22360 0.99380 0.96202 0.92756 1.22918 0.97444 1.00848 0.95961 1.22803 1.00564 0.97880 0.96875 1.22965 0.99844 0.97468 0.97068 1.23314 0.96875 1.01193 0.93043 1.24030 0.96138 1.01796 0.89183 1.68412 1.01778 1.35537 1.11391 1.22520 0.97667 0.93090 0.99267 1.19595 0.86158 0.86365 0.83773 1.90556 1.69777 1.20044 1.63436 1.42232 1.22457 1.11431 1.47355 1.19421 0.96099 1.00798 1.26866 0.86338 1.25033 0.95909 0.98375 0.96930 1.69619 1.14376 1.35259 1.33063 0.86675 0.78968 0.84901 0.78865 1.19679 1.20177 1.19528 1.23954 0.94141 0.99728 0.94130 0.92257 0.91449 0.92368 0.76569 0.92140 0.92153 0.91282 0.88539 0.90327 0.91184 0.90305 0.91507 0.91545 0.90055 0.87770 0.91407 0.88999 0.89297 0.92363 0.79802 0.91664 0.89024 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.31 37.16 0.35 -0.97 16 2 C 0.15 1.39 2.38 -67.93 -0.16 1.22 16 3 H 0.09 1.00 7.42 -51.93 -0.39 0.61 16 4 N -0.72 -6.01 4.97 -53.81 -0.27 -6.27 16 5 C 0.52 5.15 7.11 -10.99 -0.08 5.07 16 6 O -0.54 -7.39 15.51 5.56 0.09 -7.31 16 7 C -0.10 -0.74 2.48 -91.77 -0.23 -0.97 16 8 H 0.10 0.62 7.94 -51.93 -0.41 0.21 16 9 C -0.14 -0.74 8.89 37.16 0.33 -0.41 16 10 C -0.09 -0.69 2.54 -89.81 -0.23 -0.92 16 11 C -0.13 -1.13 7.60 -25.92 -0.20 -1.33 16 12 C -0.14 -0.98 8.08 -25.92 -0.21 -1.19 16 13 C -0.14 -0.83 6.68 -25.92 -0.17 -1.01 16 14 C -0.12 -1.23 3.46 -89.69 -0.31 -1.54 16 15 C 0.02 0.24 7.53 -2.63 -0.02 0.22 16 16 N -0.45 -7.05 5.65 -239.52 -1.35 -8.40 16 17 C 0.01 0.12 5.28 -4.97 -0.03 0.09 16 18 C 0.46 10.65 7.83 -10.98 -0.09 10.56 16 19 O -0.56 -15.41 16.01 5.55 0.09 -15.32 16 20 N -0.59 -14.51 5.09 -10.96 -0.06 -14.56 16 21 C -0.30 -8.73 10.16 -14.93 -0.15 -8.88 16 22 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -26.12 13.96 55.50 0.77 -25.35 16 25 Si 0.88 19.70 27.74 -169.99 -4.71 14.98 16 26 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.27 -5.52 6.52 56.52 0.37 -5.15 16 29 C 0.01 0.11 6.65 -2.76 -0.02 0.09 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.51 7.51 -51.93 -0.39 0.12 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.40 2.45 8.02 -40.82 -0.33 2.13 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.26 7.56 -51.93 -0.39 -0.14 16 36 H 0.07 0.30 7.45 -51.93 -0.39 -0.09 16 37 H 0.10 0.90 7.86 -51.93 -0.41 0.49 16 38 H 0.08 0.65 7.96 -51.93 -0.41 0.24 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 44 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.07 0.92 7.33 -51.93 -0.38 0.54 16 46 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 47 H 0.09 1.33 8.08 -51.93 -0.42 0.91 16 48 H 0.06 0.87 7.39 -51.93 -0.38 0.49 16 49 H 0.37 7.92 5.76 -40.82 -0.24 7.68 16 50 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 51 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 52 H 0.07 0.69 7.88 -51.93 -0.41 0.28 16 LS Contribution 414.51 15.07 6.25 6.25 Total: -1.00 -35.34 414.51 -9.65 -44.99 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -9.15 Total: 9.94 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -1.31 Total: 1.05 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.90 Total: -54.58 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: 0.18 Total: -22.63 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.71 Total: 14.98 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -35.34 -9.65 -44.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717552374.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.313 kcal (2) G-P(sol) polarization free energy of solvation -35.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds