Wall clock time and date at job start Tue Mar 31 2020 19:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.30961 * 2 1 4 4 C 1.54395 * 110.43018 * 237.76438 * 2 1 3 5 5 N 1.48427 * 104.65420 * 264.95170 * 4 2 1 6 6 C 1.34781 * 127.98028 * 140.36956 * 5 4 2 7 7 O 1.21288 * 119.99821 * 180.08950 * 6 5 4 8 8 C 1.50698 * 120.00019 * 0.08868 * 6 5 4 9 9 C 1.52999 * 109.47060 * 180.02562 * 8 6 5 10 10 C 1.53788 * 113.61534 * 274.13741 * 9 8 6 11 11 C 1.53954 * 87.02080 * 220.04845 * 10 9 8 12 12 C 1.53781 * 113.61533 * 176.53082 * 9 8 6 13 13 C 1.48146 * 104.18376 * 320.44270 * 5 4 2 14 14 C 1.54289 * 110.34438 * 122.17845 * 2 1 3 15 15 H 1.08998 * 110.43086 * 237.89278 * 14 2 1 16 16 C 1.52998 * 110.34096 * 0.10570 * 14 2 1 17 17 N 1.46903 * 109.47201 * 181.99204 * 16 14 2 18 18 C 1.46904 * 111.00071 * 179.97438 * 17 16 14 19 19 C 1.50704 * 109.46792 * 180.02562 * 18 17 16 20 20 O 1.21283 * 120.00160 * 359.97438 * 19 18 17 21 21 N 1.34770 * 119.99388 * 180.02562 * 19 18 17 22 22 C 1.37098 * 119.99712 * 179.97438 * 21 19 18 23 23 H 1.08003 * 120.00150 * 359.97438 * 22 21 19 24 24 C 1.38950 * 120.00030 * 179.97438 * 22 21 19 25 25 N 1.31412 * 119.99871 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 120.00187 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.47000 * 90.00056 * 26 24 22 28 28 H 1.48506 * 109.47232 * 210.00229 * 26 24 22 29 29 H 1.48501 * 109.46999 * 330.00014 * 26 24 22 30 30 H 1.08995 * 109.46710 * 297.82330 * 1 2 3 31 31 H 1.08998 * 109.46899 * 57.82424 * 1 2 3 32 32 H 1.09001 * 109.47281 * 177.82322 * 1 2 3 33 33 H 1.09004 * 110.40266 * 23.73925 * 4 2 1 34 34 H 1.09006 * 110.40687 * 146.04793 * 4 2 1 35 35 H 1.09000 * 109.47323 * 300.00107 * 8 6 5 36 36 H 1.09004 * 109.46806 * 60.00247 * 8 6 5 37 37 H 1.08999 * 112.85026 * 45.33304 * 9 8 6 38 38 H 1.09003 * 113.61300 * 334.57234 * 10 9 8 39 39 H 1.09001 * 113.61338 * 105.47163 * 10 9 8 40 40 H 1.08993 * 113.53676 * 270.81017 * 11 10 9 41 41 H 1.08999 * 113.74454 * 139.94099 * 11 10 9 42 42 H 1.08997 * 113.61479 * 254.53208 * 12 9 8 43 43 H 1.09005 * 113.61238 * 25.34888 * 12 9 8 44 44 H 1.09002 * 110.40776 * 280.72897 * 13 5 4 45 45 H 1.09002 * 110.40863 * 158.41306 * 13 5 4 46 46 H 1.09005 * 109.46850 * 301.99165 * 16 14 2 47 47 H 1.08998 * 109.47834 * 61.98951 * 16 14 2 48 48 H 1.00897 * 110.99972 * 56.04276 * 17 16 14 49 49 H 1.09004 * 109.47063 * 299.99681 * 18 17 16 50 50 H 1.08992 * 109.46774 * 59.99945 * 18 17 16 51 51 H 0.97001 * 120.00462 * 359.97438 * 21 19 18 52 52 H 0.97006 * 120.00119 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0689 -0.7717 -1.2238 5 7 2.3184 -2.1458 -0.7212 6 6 2.0845 -3.3145 -1.3506 7 8 2.3441 -4.3630 -0.7989 8 6 1.5006 -3.3184 -2.7398 9 6 1.3361 -4.7618 -3.2198 10 6 2.6030 -5.3432 -3.8695 11 6 1.6728 -6.0021 -4.9042 12 6 0.6666 -4.8798 -4.5992 13 6 2.8824 -1.9401 0.6332 14 6 2.0664 -0.7704 1.2244 15 1 2.7077 -0.1276 1.8274 16 6 0.9062 -1.3038 2.0672 17 7 1.4371 -1.9921 3.2515 18 6 0.3491 -2.5182 4.0866 19 6 0.9311 -3.2152 5.2893 20 8 2.1338 -3.2688 5.4361 21 7 0.1150 -3.7798 6.2012 22 6 0.6445 -4.4143 7.2952 23 1 1.7155 -4.4621 7.4259 24 6 -0.1969 -4.9960 8.2357 25 7 0.3106 -5.6047 9.2839 26 14 -2.0493 -4.9127 8.0100 27 1 -2.5072 -6.0941 7.2355 28 1 -2.7102 -4.9062 9.3399 29 1 -2.4032 -3.6717 7.2753 30 1 -0.3632 0.4796 0.9088 31 1 -0.3633 0.5472 -0.8698 32 1 -0.3634 -1.0269 -0.0390 33 1 1.3252 -0.7879 -2.0206 34 1 2.9958 -0.3213 -1.5792 35 1 0.5276 -2.8273 -2.7264 36 1 2.1680 -2.7841 -3.4160 37 1 0.8956 -5.4117 -2.4637 38 1 3.2623 -4.5863 -4.2945 39 1 3.1295 -6.0577 -3.2368 40 1 1.3253 -6.9921 -4.6090 41 1 2.0606 -5.9759 -5.9226 42 1 -0.3677 -5.2208 -4.5549 43 1 0.7944 -3.9955 -5.2236 44 1 3.9374 -1.6734 0.5692 45 1 2.7541 -2.8373 1.2387 46 1 0.2743 -0.4735 2.3824 47 1 0.3176 -2.0035 1.4739 48 1 2.0392 -1.3825 3.7844 49 1 -0.2864 -1.6960 4.4158 50 1 -0.2436 -3.2261 3.5074 51 1 -0.8469 -3.7372 6.0837 52 1 -0.2767 -6.0104 9.9407 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724575426.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:36 Heat of formation + Delta-G solvation = -75.125051 kcal Electronic energy + Delta-G solvation = -29520.462584 eV Core-core repulsion = 25519.272800 eV Total energy + Delta-G solvation = -4001.189785 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.34031 -40.36707 -39.84511 -38.64489 -36.60947 -35.86610 -33.86211 -33.70801 -31.91192 -30.85790 -28.68827 -27.57808 -26.46547 -26.32665 -25.08720 -24.12126 -23.10022 -21.37138 -20.52757 -20.34218 -20.17150 -19.84624 -18.02598 -17.80615 -17.50837 -17.03987 -16.78877 -16.60314 -16.02848 -15.87890 -15.69053 -15.44670 -15.23653 -15.07568 -14.65490 -14.48965 -14.18582 -14.07146 -13.96782 -13.71181 -13.51493 -13.28597 -13.11498 -13.07686 -12.86602 -12.82907 -12.67687 -12.54616 -12.44290 -12.33577 -12.00043 -11.69844 -11.59152 -11.54343 -11.49900 -11.29512 -11.20053 -11.06218 -10.72900 -10.47329 -10.28220 -9.66133 -9.29034 -8.44192 -6.05393 1.26915 1.33387 1.41876 1.70454 1.91426 2.04949 2.20422 2.69567 3.11607 3.33262 3.49961 3.63003 3.73347 3.75736 3.80949 3.87734 4.00172 4.08639 4.11129 4.28785 4.34861 4.37988 4.44900 4.46677 4.51766 4.55586 4.64363 4.67732 4.71248 4.76784 4.81755 4.86398 4.90300 4.96242 5.00898 5.02707 5.06674 5.09583 5.17385 5.20367 5.25390 5.38564 5.40435 5.49845 5.60428 5.63674 5.87560 6.03276 6.41627 6.56618 6.67298 6.84444 7.25109 7.35804 7.92445 8.73576 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011783 B = 0.002356 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.787726 B =11879.741658 C =13141.768542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.114 0.886 4 C 0.101 3.899 5 N -0.624 5.624 6 C 0.519 3.481 7 O -0.596 6.596 8 C -0.113 4.113 9 C -0.105 4.105 10 C -0.142 4.142 11 C -0.142 4.142 12 C -0.121 4.121 13 C 0.106 3.894 14 C -0.090 4.090 15 H 0.095 0.905 16 C 0.073 3.927 17 N -0.692 5.692 18 C 0.066 3.934 19 C 0.447 3.553 20 O -0.614 6.614 21 N -0.591 5.591 22 C -0.330 4.330 23 H 0.054 0.946 24 C -0.016 4.016 25 N -0.934 5.934 26 Si 0.966 3.034 27 H -0.259 1.259 28 H -0.271 1.271 29 H -0.230 1.230 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.039 0.961 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.104 0.896 44 H 0.069 0.931 45 H 0.052 0.948 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.346 0.654 49 H 0.081 0.919 50 H 0.101 0.899 51 H 0.390 0.610 52 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.850 16.114 -33.278 37.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.132 0.868 4 C -0.021 4.021 5 N -0.358 5.358 6 C 0.310 3.690 7 O -0.476 6.476 8 C -0.152 4.152 9 C -0.124 4.124 10 C -0.179 4.179 11 C -0.179 4.179 12 C -0.159 4.159 13 C -0.017 4.017 14 C -0.110 4.110 15 H 0.113 0.887 16 C -0.055 4.055 17 N -0.325 5.325 18 C -0.067 4.067 19 C 0.235 3.765 20 O -0.498 6.498 21 N -0.233 5.233 22 C -0.460 4.460 23 H 0.072 0.928 24 C -0.215 4.215 25 N -0.574 5.574 26 Si 0.786 3.214 27 H -0.184 1.184 28 H -0.196 1.196 29 H -0.154 1.154 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.123 0.877 34 H 0.109 0.891 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.058 0.942 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.123 0.877 44 H 0.087 0.913 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.165 0.835 49 H 0.098 0.902 50 H 0.119 0.881 51 H 0.225 0.775 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.852 14.724 -33.096 36.547 hybrid contribution -0.630 -0.145 1.604 1.730 sum -5.483 14.579 -31.492 35.133 Atomic orbital electron populations 1.21931 0.93925 1.01555 1.03018 1.22144 0.96850 0.99971 0.92145 0.86836 1.22836 1.02315 0.79537 0.97368 1.49234 1.62620 1.06651 1.17271 1.21188 0.77384 0.81464 0.88934 1.90732 1.54791 1.32906 1.69214 1.21696 1.03559 0.98945 0.91046 1.22322 0.98289 0.94950 0.96848 1.23030 0.96543 1.00320 0.98023 1.22826 0.97412 0.98230 0.99432 1.22937 0.98598 0.99571 0.94763 1.22272 0.97022 0.98983 0.83412 1.22116 0.96454 0.95733 0.96696 0.88688 1.22166 0.96453 0.96517 0.90369 1.60007 1.19520 1.43148 1.09843 1.21560 0.93806 0.99683 0.91643 1.21003 0.86961 0.82931 0.85592 1.90537 1.17100 1.63705 1.78487 1.42033 1.08339 1.51444 1.21456 1.19011 0.93973 1.32834 1.00139 0.92791 1.26149 1.05568 0.95377 0.94383 1.69808 1.38482 1.36690 1.12434 0.85347 0.76033 0.80670 0.79355 1.18408 1.19630 1.15353 0.91928 0.90471 0.93835 0.87712 0.89135 0.86559 0.86344 0.91633 0.89064 0.94182 0.91060 0.90003 0.91032 0.87722 0.91289 0.92896 0.92578 0.91962 0.83527 0.90170 0.88063 0.77491 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 7.93 71.98 0.57 -0.70 16 2 C -0.09 -0.84 3.65 -9.88 -0.04 -0.88 16 3 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 4 C 0.10 0.93 6.48 86.48 0.56 1.49 16 5 N -0.62 -12.35 3.33 -807.17 -2.69 -15.03 16 6 C 0.52 12.71 7.92 87.66 0.69 13.40 16 7 O -0.60 -21.95 16.05 -3.06 -0.05 -22.00 16 8 C -0.11 -1.59 4.52 29.85 0.13 -1.46 16 9 C -0.11 -1.84 3.11 -10.27 -0.03 -1.87 16 10 C -0.14 -2.51 7.65 31.18 0.24 -2.27 16 11 C -0.14 -1.91 8.09 31.18 0.25 -1.66 16 12 C -0.12 -1.35 7.65 31.12 0.24 -1.12 16 13 C 0.11 2.54 6.51 86.53 0.56 3.10 16 14 C -0.09 -1.54 3.25 -9.89 -0.03 -1.57 16 15 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 16 C 0.07 1.55 3.85 86.30 0.33 1.88 16 17 N -0.69 -21.48 5.57 -517.91 -2.88 -24.37 16 18 C 0.07 2.16 6.17 85.56 0.53 2.68 16 19 C 0.45 21.39 7.82 87.66 0.69 22.07 16 20 O -0.61 -35.82 15.78 -3.04 -0.05 -35.87 16 21 N -0.59 -29.27 5.09 -306.99 -1.56 -30.83 16 22 C -0.33 -20.11 10.16 84.04 0.85 -19.26 16 23 H 0.05 3.90 7.39 -2.91 -0.02 3.88 16 24 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 25 N -0.93 -57.74 13.96 21.66 0.30 -57.44 16 26 Si 0.97 40.03 27.74 68.60 1.90 41.93 16 27 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 28 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 29 H -0.23 -8.00 6.52 99.48 0.65 -7.35 16 30 H 0.06 0.57 6.75 -2.39 -0.02 0.55 16 31 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.04 0.54 6.85 -2.39 -0.02 0.52 16 33 H 0.10 0.46 7.05 -2.38 -0.02 0.44 16 34 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 35 H 0.12 1.06 7.96 -2.39 -0.02 1.04 16 36 H 0.12 1.02 7.88 -2.39 -0.02 1.00 16 37 H 0.07 1.60 7.73 -2.39 -0.02 1.58 16 38 H 0.09 1.31 7.92 -2.39 -0.02 1.29 16 39 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.10 0.69 8.10 -2.38 -0.02 0.67 16 44 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.05 1.83 7.19 -2.39 -0.02 1.81 16 46 H 0.06 0.95 6.68 -2.38 -0.02 0.93 16 47 H 0.06 1.47 6.92 -2.39 -0.02 1.45 16 48 H 0.35 11.02 8.43 -89.70 -0.76 10.26 16 49 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 50 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 51 H 0.39 16.00 5.76 -92.71 -0.53 15.46 16 52 H 0.28 15.76 8.31 -92.70 -0.77 14.99 16 Total: -1.00 -89.13 408.96 0.57 -88.56 By element: Atomic # 1 Polarization: 42.10 SS G_CDS: -0.43 Total: 41.67 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 6.02 Total: 13.38 kcal Atomic # 7 Polarization: -120.85 SS G_CDS: -6.83 Total: -127.68 kcal Atomic # 8 Polarization: -57.77 SS G_CDS: -0.10 Total: -57.87 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 1.90 Total: 41.93 kcal Total: -89.13 0.57 -88.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724575426.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.439 kcal (2) G-P(sol) polarization free energy of solvation -89.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds