Wall clock time and date at job start Tue Mar 31 2020 19:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.80261 * 2 1 4 4 C 1.54943 * 110.73545 * 236.71419 * 2 1 3 5 5 N 1.48119 * 103.25373 * 279.04002 * 4 2 1 6 6 C 1.34779 * 127.03161 * 140.74804 * 5 4 2 7 7 O 1.21284 * 120.00135 * 175.56746 * 6 5 4 8 8 C 1.50694 * 120.00300 * 355.56406 * 6 5 4 9 9 C 1.52998 * 112.85034 * 57.24079 * 8 6 5 10 10 C 1.53788 * 113.61493 * 285.93991 * 8 6 5 11 11 C 1.53780 * 87.08027 * 220.01832 * 10 8 6 12 12 C 1.53779 * 87.08341 * 25.43117 * 11 10 8 13 13 C 1.47480 * 105.93356 * 320.70711 * 5 4 2 14 14 C 1.54000 * 107.08449 * 25.44964 * 13 5 4 15 15 H 1.09001 * 110.32627 * 239.69889 * 14 13 5 16 16 C 1.53001 * 110.32850 * 117.58124 * 14 13 5 17 17 N 1.46897 * 109.47074 * 66.45528 * 16 14 13 18 18 C 1.46899 * 111.00253 * 179.97438 * 17 16 14 19 19 C 1.50701 * 109.47321 * 180.02562 * 18 17 16 20 20 O 1.21289 * 120.00050 * 359.97438 * 19 18 17 21 21 N 1.34776 * 119.99802 * 179.72746 * 19 18 17 22 22 C 1.37099 * 119.99706 * 180.27443 * 21 19 18 23 23 H 1.08004 * 120.00153 * 359.97438 * 22 21 19 24 24 C 1.38946 * 120.00088 * 180.02562 * 22 21 19 25 25 N 1.31421 * 119.99801 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00561 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.46997 * 89.99364 * 26 24 22 28 28 H 1.48501 * 109.47461 * 209.99755 * 26 24 22 29 29 H 1.48500 * 109.46803 * 330.00040 * 26 24 22 30 30 H 1.09000 * 109.46927 * 296.70879 * 1 2 3 31 31 H 1.09007 * 109.46969 * 56.70461 * 1 2 3 32 32 H 1.08997 * 109.47575 * 176.70359 * 1 2 3 33 33 H 1.09007 * 110.66318 * 160.60313 * 4 2 1 34 34 H 1.09001 * 110.80902 * 37.54781 * 4 2 1 35 35 H 1.09000 * 109.47093 * 53.63376 * 9 8 6 36 36 H 1.09001 * 109.47119 * 173.62753 * 9 8 6 37 37 H 1.08993 * 109.47396 * 293.62838 * 9 8 6 38 38 H 1.09003 * 113.61215 * 334.56606 * 10 8 6 39 39 H 1.08999 * 113.61643 * 105.46805 * 10 8 6 40 40 H 1.09005 * 113.61051 * 270.87796 * 11 10 8 41 41 H 1.08999 * 113.61386 * 139.98434 * 11 10 8 42 42 H 1.09002 * 113.60974 * 220.02040 * 12 11 10 43 43 H 1.08999 * 113.69121 * 89.12567 * 12 11 10 44 44 H 1.09000 * 109.91974 * 266.08767 * 13 5 4 45 45 H 1.09000 * 110.07053 * 144.89415 * 13 5 4 46 46 H 1.09000 * 109.47147 * 306.45316 * 16 14 13 47 47 H 1.09004 * 109.47106 * 186.45271 * 16 14 13 48 48 H 1.00898 * 111.00203 * 303.95644 * 17 16 14 49 49 H 1.08997 * 109.46875 * 59.99946 * 18 17 16 50 50 H 1.09008 * 109.47354 * 300.00174 * 18 17 16 51 51 H 0.96996 * 120.00119 * 0.27455 * 21 19 18 52 52 H 0.97003 * 119.99439 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 6 2.0786 -0.7953 -1.2113 5 7 1.9870 -2.2038 -0.7624 6 6 1.6232 -3.2697 -1.5028 7 8 1.6691 -4.3837 -1.0255 8 6 1.1593 -3.0773 -2.9236 9 6 2.1955 -2.3654 -3.7957 10 6 -0.2548 -2.4831 -3.0349 11 6 -0.4877 -3.4586 -4.2007 12 6 0.5881 -4.3537 -3.5634 13 6 2.3762 -2.2016 0.6601 14 6 2.0775 -0.7939 1.2086 15 1 2.9907 -0.3324 1.5844 16 6 1.0253 -0.8675 2.3168 17 7 1.5816 -1.5817 3.4737 18 6 0.5972 -1.6714 4.5603 19 6 1.2027 -2.4081 5.7272 20 8 2.3420 -2.8186 5.6600 21 7 0.4798 -2.6066 6.8472 22 6 1.0326 -3.2719 7.9109 23 1 2.0471 -3.6374 7.8511 24 6 0.2872 -3.4770 9.0654 25 7 -0.9475 -3.0327 9.1380 26 14 1.0400 -4.3841 10.5145 27 1 1.7069 -3.4103 11.4158 28 1 -0.0273 -5.0982 11.2602 29 1 2.0391 -5.3649 10.0195 30 1 -0.3633 0.4619 0.9180 31 1 -0.3633 0.5642 -0.8590 32 1 -0.3634 -1.0259 -0.0591 33 1 3.1145 -0.5226 -1.4132 34 1 1.4602 -0.6319 -2.0939 35 1 3.1476 -2.8923 -3.7319 36 1 1.8542 -2.3559 -4.8308 37 1 2.3229 -1.3411 -3.4457 38 1 -0.8820 -2.6832 -2.1662 39 1 -0.2657 -1.4350 -3.3338 40 1 -0.2009 -3.0549 -5.1717 41 1 -1.4819 -3.9056 -4.2040 42 1 1.2576 -4.8156 -4.2891 43 1 0.1926 -5.0658 -2.8391 44 1 3.4402 -2.4186 0.7543 45 1 1.7960 -2.9442 1.2078 46 1 0.1473 -1.3989 1.9495 47 1 0.7407 0.1416 2.6153 48 1 1.9124 -2.4973 3.2085 49 1 -0.2839 -2.2082 4.2089 50 1 0.3100 -0.6677 4.8742 51 1 -0.4315 -2.2787 6.9008 52 1 -1.4677 -3.1756 9.9442 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724610207.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:27 Heat of formation + Delta-G solvation = -51.652846 kcal Electronic energy + Delta-G solvation = -29963.210174 eV Core-core repulsion = 25963.038221 eV Total energy + Delta-G solvation = -4000.171954 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.14151 -39.37982 -38.18563 -37.46728 -35.34258 -33.84968 -32.87151 -31.22075 -30.78602 -29.67100 -27.56549 -26.70507 -26.02202 -25.46492 -24.57602 -23.54288 -22.25389 -20.41687 -19.54256 -19.12406 -18.69497 -17.85468 -17.26092 -16.82074 -16.13744 -15.99679 -15.60829 -15.35284 -14.76119 -14.54675 -14.41929 -14.04436 -14.00174 -13.84183 -13.73129 -13.47394 -13.07725 -12.87405 -12.80538 -12.73069 -12.62904 -12.40584 -12.23575 -12.03469 -11.87530 -11.64945 -11.53995 -11.45914 -11.44520 -11.02525 -10.98840 -10.85377 -10.74946 -10.70854 -10.60217 -10.37129 -10.19095 -9.73256 -9.48304 -8.85436 -8.43345 -8.03468 -7.93071 -6.39181 -3.79817 2.45615 2.75159 3.20096 3.28400 3.34768 3.93447 3.99097 4.02601 4.08039 4.19892 4.23549 4.31739 4.40967 4.42013 4.62289 4.69496 4.92918 5.01550 5.02762 5.10398 5.13474 5.17721 5.22886 5.24655 5.28324 5.32013 5.36922 5.41749 5.47503 5.49158 5.53191 5.59709 5.61665 5.65490 5.69406 5.78677 5.82832 5.83551 5.88468 5.95385 5.96807 6.01765 6.08187 6.23851 6.30377 7.22575 7.36418 7.57877 7.66296 8.01763 8.09117 8.64125 9.20617 9.57096 10.08724 10.78643 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019379 B = 0.002083 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.553449 B =13439.543214 C =13902.857407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 H 0.091 0.909 4 C 0.100 3.900 5 N -0.615 5.615 6 C 0.544 3.456 7 O -0.537 6.537 8 C -0.106 4.106 9 C -0.132 4.132 10 C -0.121 4.121 11 C -0.141 4.141 12 C -0.114 4.114 13 C 0.107 3.893 14 C -0.094 4.094 15 H 0.097 0.903 16 C 0.067 3.933 17 N -0.671 5.671 18 C 0.051 3.949 19 C 0.441 3.559 20 O -0.582 6.582 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.903 5.903 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.031 0.969 47 H 0.075 0.925 48 H 0.348 0.652 49 H 0.042 0.958 50 H 0.086 0.914 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.395 8.411 -28.863 30.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 H 0.109 0.891 4 C -0.023 4.023 5 N -0.349 5.349 6 C 0.333 3.667 7 O -0.413 6.413 8 C -0.109 4.109 9 C -0.189 4.189 10 C -0.158 4.158 11 C -0.178 4.178 12 C -0.152 4.152 13 C -0.015 4.015 14 C -0.113 4.113 15 H 0.115 0.885 16 C -0.062 4.062 17 N -0.304 5.304 18 C -0.082 4.082 19 C 0.226 3.774 20 O -0.466 6.466 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.210 1.210 29 H -0.194 1.194 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.111 0.889 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.049 0.951 47 H 0.094 0.906 48 H 0.168 0.832 49 H 0.060 0.940 50 H 0.104 0.896 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.544 7.954 -28.272 29.375 hybrid contribution -0.841 -0.808 0.621 1.322 sum -0.298 7.146 -27.652 28.561 Atomic orbital electron populations 1.21842 0.94261 1.02070 1.02071 1.22300 0.96605 0.99207 0.93932 0.89052 1.22789 1.01108 0.80673 0.97707 1.48753 1.67102 1.07508 1.11580 1.20108 0.76399 0.83081 0.87119 1.90728 1.53933 1.23637 1.73034 1.22108 0.96444 1.00202 0.92180 1.21744 0.97717 1.00328 0.99130 1.22933 0.94061 0.99402 0.99444 1.22832 0.99668 0.97580 0.97733 1.22868 0.97522 0.95242 0.99521 1.22124 1.00673 0.97753 0.80957 1.22164 1.00230 0.94612 0.94330 0.88456 1.22097 0.94845 0.99435 0.89866 1.60112 1.37358 1.25459 1.07491 1.21659 0.93289 1.00891 0.92323 1.19815 0.87461 0.85524 0.84563 1.90523 1.18602 1.55057 1.82460 1.41862 1.15064 1.50579 1.12611 1.19707 0.99954 1.31478 0.91630 0.87924 1.25266 0.95522 0.98076 0.99164 1.69621 1.08713 1.46646 1.29434 0.85851 0.78444 0.79386 0.80572 1.20395 1.20951 1.19420 0.91676 0.92675 0.92516 0.90791 0.89621 0.91855 0.91261 0.91260 0.89737 0.90682 0.89861 0.90941 0.90933 0.88857 0.91171 0.90661 0.95090 0.90621 0.83172 0.93986 0.89589 0.77476 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 7.99 37.16 0.30 -0.74 16 2 C -0.10 -0.71 3.60 -88.74 -0.32 -1.03 16 3 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 4 C 0.10 0.68 5.04 -2.13 -0.01 0.67 16 5 N -0.62 -6.38 3.19 -169.76 -0.54 -6.92 16 6 C 0.54 6.62 6.94 -10.99 -0.08 6.55 16 7 O -0.54 -9.01 16.36 5.55 0.09 -8.92 16 8 C -0.11 -0.89 0.72 -154.85 -0.11 -1.00 16 9 C -0.13 -0.80 8.63 37.16 0.32 -0.48 16 10 C -0.12 -0.82 6.66 -25.92 -0.17 -0.99 16 11 C -0.14 -0.87 7.73 -25.92 -0.20 -1.07 16 12 C -0.11 -0.96 6.93 -25.92 -0.18 -1.14 16 13 C 0.11 1.26 6.14 -2.98 -0.02 1.24 16 14 C -0.09 -0.93 3.18 -89.25 -0.28 -1.21 16 15 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 16 C 0.07 0.80 3.70 -3.83 -0.01 0.78 16 17 N -0.67 -10.99 6.12 -115.06 -0.70 -11.69 16 18 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 19 C 0.44 10.70 7.82 -10.99 -0.09 10.62 16 20 O -0.58 -16.24 15.78 5.55 0.09 -16.16 16 21 N -0.56 -14.65 5.29 -10.96 -0.06 -14.71 16 22 C -0.30 -8.49 9.68 -14.93 -0.14 -8.64 16 23 H 0.10 3.07 7.16 -52.48 -0.38 2.69 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.95 13.05 55.50 0.72 -24.22 16 26 Si 0.93 21.46 29.55 -169.99 -5.02 16.43 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 29 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 30 H 0.06 0.48 6.67 -51.93 -0.35 0.14 16 31 H 0.05 0.31 8.14 -51.92 -0.42 -0.12 16 32 H 0.06 0.50 7.61 -51.93 -0.40 0.10 16 33 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 34 H 0.09 0.45 5.09 -51.93 -0.26 0.19 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.32 7.32 -51.93 -0.38 -0.06 16 37 H 0.07 0.34 5.26 -51.93 -0.27 0.06 16 38 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 39 H 0.07 0.39 7.78 -51.93 -0.40 -0.02 16 40 H 0.08 0.40 7.62 -51.93 -0.40 0.00 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 43 H 0.09 0.98 7.55 -51.93 -0.39 0.59 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.07 1.07 6.79 -51.93 -0.35 0.72 16 46 H 0.03 0.37 6.85 -51.93 -0.36 0.02 16 47 H 0.08 0.84 7.55 -51.93 -0.39 0.45 16 48 H 0.35 6.11 7.07 -39.29 -0.28 5.83 16 49 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.09 1.42 8.14 -51.92 -0.42 1.00 16 51 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 52 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 403.11 15.07 6.07 6.07 Total: -1.00 -34.22 403.11 -9.18 -43.41 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -8.71 Total: 11.76 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -1.13 Total: 4.94 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.58 Total: -57.54 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: 0.18 Total: -25.08 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.22 -9.18 -43.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724610207.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.245 kcal (2) G-P(sol) polarization free energy of solvation -34.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds