Wall clock time and date at job start Tue Mar 31 2020 19:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.80261 * 2 1 4 4 C 1.54943 * 110.73545 * 236.71419 * 2 1 3 5 5 N 1.48119 * 103.25373 * 279.04002 * 4 2 1 6 6 C 1.34779 * 127.03161 * 140.74804 * 5 4 2 7 7 O 1.21284 * 120.00135 * 175.56746 * 6 5 4 8 8 C 1.50694 * 120.00300 * 355.56406 * 6 5 4 9 9 C 1.52998 * 112.85034 * 57.24079 * 8 6 5 10 10 C 1.53788 * 113.61493 * 285.93991 * 8 6 5 11 11 C 1.53780 * 87.08027 * 220.01832 * 10 8 6 12 12 C 1.53779 * 87.08341 * 25.43117 * 11 10 8 13 13 C 1.47480 * 105.93356 * 320.70711 * 5 4 2 14 14 C 1.54000 * 107.08449 * 25.44964 * 13 5 4 15 15 H 1.09001 * 110.32627 * 239.69889 * 14 13 5 16 16 C 1.53001 * 110.32850 * 117.58124 * 14 13 5 17 17 N 1.46897 * 109.47074 * 66.45528 * 16 14 13 18 18 C 1.46899 * 111.00253 * 179.97438 * 17 16 14 19 19 C 1.50701 * 109.47321 * 180.02562 * 18 17 16 20 20 O 1.21289 * 120.00050 * 359.97438 * 19 18 17 21 21 N 1.34776 * 119.99802 * 179.72746 * 19 18 17 22 22 C 1.37099 * 119.99706 * 180.27443 * 21 19 18 23 23 H 1.08004 * 120.00153 * 359.97438 * 22 21 19 24 24 C 1.38946 * 120.00088 * 180.02562 * 22 21 19 25 25 N 1.31421 * 119.99801 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00561 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.46997 * 89.99364 * 26 24 22 28 28 H 1.48501 * 109.47461 * 209.99755 * 26 24 22 29 29 H 1.48500 * 109.46803 * 330.00040 * 26 24 22 30 30 H 1.09000 * 109.46927 * 296.70879 * 1 2 3 31 31 H 1.09007 * 109.46969 * 56.70461 * 1 2 3 32 32 H 1.08997 * 109.47575 * 176.70359 * 1 2 3 33 33 H 1.09007 * 110.66318 * 160.60313 * 4 2 1 34 34 H 1.09001 * 110.80902 * 37.54781 * 4 2 1 35 35 H 1.09000 * 109.47093 * 53.63376 * 9 8 6 36 36 H 1.09001 * 109.47119 * 173.62753 * 9 8 6 37 37 H 1.08993 * 109.47396 * 293.62838 * 9 8 6 38 38 H 1.09003 * 113.61215 * 334.56606 * 10 8 6 39 39 H 1.08999 * 113.61643 * 105.46805 * 10 8 6 40 40 H 1.09005 * 113.61051 * 270.87796 * 11 10 8 41 41 H 1.08999 * 113.61386 * 139.98434 * 11 10 8 42 42 H 1.09002 * 113.60974 * 220.02040 * 12 11 10 43 43 H 1.08999 * 113.69121 * 89.12567 * 12 11 10 44 44 H 1.09000 * 109.91974 * 266.08767 * 13 5 4 45 45 H 1.09000 * 110.07053 * 144.89415 * 13 5 4 46 46 H 1.09000 * 109.47147 * 306.45316 * 16 14 13 47 47 H 1.09004 * 109.47106 * 186.45271 * 16 14 13 48 48 H 1.00898 * 111.00203 * 303.95644 * 17 16 14 49 49 H 1.08997 * 109.46875 * 59.99946 * 18 17 16 50 50 H 1.09008 * 109.47354 * 300.00174 * 18 17 16 51 51 H 0.96996 * 120.00119 * 0.27455 * 21 19 18 52 52 H 0.97003 * 119.99439 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 6 2.0786 -0.7953 -1.2113 5 7 1.9870 -2.2038 -0.7624 6 6 1.6232 -3.2697 -1.5028 7 8 1.6691 -4.3837 -1.0255 8 6 1.1593 -3.0773 -2.9236 9 6 2.1955 -2.3654 -3.7957 10 6 -0.2548 -2.4831 -3.0349 11 6 -0.4877 -3.4586 -4.2007 12 6 0.5881 -4.3537 -3.5634 13 6 2.3762 -2.2016 0.6601 14 6 2.0775 -0.7939 1.2086 15 1 2.9907 -0.3324 1.5844 16 6 1.0253 -0.8675 2.3168 17 7 1.5816 -1.5817 3.4737 18 6 0.5972 -1.6714 4.5603 19 6 1.2027 -2.4081 5.7272 20 8 2.3420 -2.8186 5.6600 21 7 0.4798 -2.6066 6.8472 22 6 1.0326 -3.2719 7.9109 23 1 2.0471 -3.6374 7.8511 24 6 0.2872 -3.4770 9.0654 25 7 -0.9475 -3.0327 9.1380 26 14 1.0400 -4.3841 10.5145 27 1 1.7069 -3.4103 11.4158 28 1 -0.0273 -5.0982 11.2602 29 1 2.0391 -5.3649 10.0195 30 1 -0.3633 0.4619 0.9180 31 1 -0.3633 0.5642 -0.8590 32 1 -0.3634 -1.0259 -0.0591 33 1 3.1145 -0.5226 -1.4132 34 1 1.4602 -0.6319 -2.0939 35 1 3.1476 -2.8923 -3.7319 36 1 1.8542 -2.3559 -4.8308 37 1 2.3229 -1.3411 -3.4457 38 1 -0.8820 -2.6832 -2.1662 39 1 -0.2657 -1.4350 -3.3338 40 1 -0.2009 -3.0549 -5.1717 41 1 -1.4819 -3.9056 -4.2040 42 1 1.2576 -4.8156 -4.2891 43 1 0.1926 -5.0658 -2.8391 44 1 3.4402 -2.4186 0.7543 45 1 1.7960 -2.9442 1.2078 46 1 0.1473 -1.3989 1.9495 47 1 0.7407 0.1416 2.6153 48 1 1.9124 -2.4973 3.2085 49 1 -0.2839 -2.2082 4.2089 50 1 0.3100 -0.6677 4.8742 51 1 -0.4315 -2.2787 6.9008 52 1 -1.4677 -3.1756 9.9442 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724610207.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:26 Heat of formation + Delta-G solvation = -76.249080 kcal Electronic energy + Delta-G solvation = -29964.276747 eV Core-core repulsion = 25963.038221 eV Total energy + Delta-G solvation = -4001.238526 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.91627 -40.34691 -39.87805 -38.39722 -36.65937 -35.84734 -33.79417 -33.28224 -31.59350 -30.42678 -28.62050 -27.77054 -26.72887 -26.50573 -25.76542 -24.73284 -23.09766 -21.29214 -21.00792 -20.23628 -19.91995 -19.39354 -18.03373 -17.98203 -17.52347 -16.95826 -16.76329 -16.48513 -16.15013 -16.06900 -15.59308 -15.31542 -15.15915 -14.71663 -14.69281 -14.49460 -14.23917 -13.85433 -13.75718 -13.56778 -13.51861 -13.28299 -13.25050 -13.06614 -13.05160 -12.86596 -12.75865 -12.68692 -12.45038 -12.23753 -12.14496 -12.11905 -11.65662 -11.54331 -11.52046 -11.48269 -11.43968 -11.17061 -10.61438 -10.38690 -10.04917 -9.73754 -9.37415 -8.49545 -5.98591 1.35874 1.39445 1.52613 1.55235 1.93977 2.01134 2.26986 2.87094 3.17229 3.33508 3.42438 3.43738 3.57648 3.61321 3.76314 3.85491 3.86542 3.98993 4.22992 4.26192 4.27258 4.41076 4.43517 4.48701 4.52684 4.57304 4.61204 4.67062 4.70099 4.75037 4.78694 4.80904 4.84385 4.87198 4.92140 4.97846 5.04231 5.08671 5.16952 5.18507 5.22022 5.27791 5.31289 5.38019 5.51547 5.53931 5.85185 6.06739 6.29469 6.53714 6.56756 7.09265 7.10768 7.52170 8.07737 8.67909 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019379 B = 0.002083 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.553449 B =13439.543214 C =13902.857407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 H 0.121 0.879 4 C 0.097 3.903 5 N -0.612 5.612 6 C 0.533 3.467 7 O -0.600 6.600 8 C -0.104 4.104 9 C -0.128 4.128 10 C -0.115 4.115 11 C -0.126 4.126 12 C -0.128 4.128 13 C 0.105 3.895 14 C -0.086 4.086 15 H 0.099 0.901 16 C 0.071 3.929 17 N -0.684 5.684 18 C 0.065 3.935 19 C 0.435 3.565 20 O -0.624 6.624 21 N -0.572 5.572 22 C -0.335 4.335 23 H 0.078 0.922 24 C -0.014 4.014 25 N -0.920 5.920 26 Si 0.994 3.006 27 H -0.269 1.269 28 H -0.269 1.269 29 H -0.275 1.275 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.033 0.967 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.050 0.950 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.040 0.960 46 H 0.030 0.970 47 H 0.094 0.906 48 H 0.337 0.663 49 H 0.059 0.941 50 H 0.110 0.890 51 H 0.397 0.603 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.099 11.313 -30.910 32.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.139 0.861 4 C -0.024 4.024 5 N -0.344 5.344 6 C 0.323 3.677 7 O -0.481 6.481 8 C -0.107 4.107 9 C -0.185 4.185 10 C -0.152 4.152 11 C -0.163 4.163 12 C -0.166 4.166 13 C -0.018 4.018 14 C -0.106 4.106 15 H 0.117 0.883 16 C -0.058 4.058 17 N -0.316 5.316 18 C -0.067 4.067 19 C 0.223 3.777 20 O -0.511 6.511 21 N -0.210 5.210 22 C -0.465 4.465 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.818 3.182 27 H -0.194 1.194 28 H -0.194 1.194 29 H -0.200 1.200 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.069 0.931 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.123 0.877 40 H 0.128 0.872 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.059 0.941 46 H 0.048 0.952 47 H 0.112 0.888 48 H 0.155 0.845 49 H 0.077 0.923 50 H 0.128 0.872 51 H 0.231 0.769 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.190 10.929 -30.342 32.250 hybrid contribution -0.611 -1.729 1.251 2.220 sum -0.801 9.199 -29.090 30.521 Atomic orbital electron populations 1.21843 0.94112 1.01062 1.03172 1.22343 0.96612 1.00074 0.91915 0.86083 1.23111 1.02843 0.77973 0.98486 1.48865 1.65798 1.08961 1.10811 1.20989 0.75530 0.82485 0.88671 1.90689 1.56680 1.26192 1.74580 1.22254 0.97957 1.00714 0.89777 1.21781 0.96209 1.00631 0.99866 1.22917 0.92142 1.01164 0.99008 1.22828 0.98773 0.96265 0.98451 1.22899 0.98954 0.95393 0.99334 1.22041 0.99400 0.98337 0.82070 1.22110 0.99901 0.93685 0.94870 0.88306 1.22209 0.95299 0.99431 0.88833 1.60175 1.37514 1.25070 1.08828 1.21535 0.93516 1.01228 0.90446 1.20905 0.86881 0.84535 0.85381 1.90488 1.20618 1.56595 1.83376 1.41929 1.15357 1.50823 1.12856 1.19665 0.99613 1.33686 0.93518 0.90448 1.26070 0.95895 0.98256 1.01111 1.69677 1.09340 1.46654 1.30371 0.84913 0.77862 0.78194 0.77265 1.19383 1.19383 1.19965 0.91837 0.90204 0.94734 0.88974 0.87143 0.93103 0.88909 0.89420 0.91705 0.87726 0.87214 0.90847 0.90420 0.92207 0.92255 0.94137 0.95191 0.88824 0.84485 0.92343 0.87158 0.76928 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 7.99 71.98 0.57 -1.04 16 2 C -0.09 -0.97 3.60 -9.58 -0.03 -1.01 16 3 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 4 C 0.10 1.03 5.04 86.73 0.44 1.46 16 5 N -0.61 -12.61 3.19 -809.40 -2.58 -15.19 16 6 C 0.53 13.50 6.94 87.65 0.61 14.11 16 7 O -0.60 -22.12 16.36 -3.04 -0.05 -22.17 16 8 C -0.10 -1.64 0.72 -52.40 -0.04 -1.68 16 9 C -0.13 -1.18 8.63 71.98 0.62 -0.56 16 10 C -0.11 -1.31 6.66 31.12 0.21 -1.11 16 11 C -0.13 -1.28 7.73 31.12 0.24 -1.04 16 12 C -0.13 -2.19 6.93 31.12 0.22 -1.98 16 13 C 0.10 2.59 6.14 86.53 0.53 3.12 16 14 C -0.09 -1.61 3.18 -9.90 -0.03 -1.64 16 15 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 16 C 0.07 1.62 3.70 86.30 0.32 1.93 16 17 N -0.68 -22.61 6.12 -517.93 -3.17 -25.78 16 18 C 0.07 2.35 6.17 85.56 0.53 2.88 16 19 C 0.44 21.75 7.82 87.66 0.69 22.43 16 20 O -0.62 -36.32 15.78 -3.06 -0.05 -36.37 16 21 N -0.57 -30.52 5.29 -306.99 -1.62 -32.14 16 22 C -0.34 -19.69 9.68 84.04 0.81 -18.87 16 23 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 24 C -0.01 -0.74 5.50 84.92 0.47 -0.28 16 25 N -0.92 -50.64 13.05 21.66 0.28 -50.36 16 26 Si 0.99 44.08 29.55 68.60 2.03 46.10 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 28 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 29 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 30 H 0.06 0.75 6.67 -2.39 -0.02 0.73 16 31 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.03 0.55 7.61 -2.39 -0.02 0.53 16 33 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.11 0.66 5.09 -2.39 -0.01 0.65 16 35 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.09 0.46 7.32 -2.39 -0.02 0.44 16 37 H 0.09 0.47 5.26 -2.39 -0.01 0.46 16 38 H 0.06 1.01 8.09 -2.39 -0.02 1.00 16 39 H 0.10 0.59 7.78 -2.39 -0.02 0.58 16 40 H 0.11 0.59 7.62 -2.38 -0.02 0.57 16 41 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.08 1.19 8.10 -2.39 -0.02 1.17 16 43 H 0.06 1.42 7.55 -2.39 -0.02 1.40 16 44 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.04 1.27 6.79 -2.39 -0.02 1.25 16 46 H 0.03 0.71 6.85 -2.39 -0.02 0.69 16 47 H 0.09 1.84 7.55 -2.38 -0.02 1.82 16 48 H 0.34 12.48 7.07 -89.70 -0.63 11.84 16 49 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 50 H 0.11 3.47 8.14 -2.38 -0.02 3.45 16 51 H 0.40 19.97 7.90 -92.71 -0.73 19.24 16 52 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -79.91 403.11 0.55 -79.36 By element: Atomic # 1 Polarization: 40.24 SS G_CDS: -0.43 Total: 39.80 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: 6.15 Total: 16.74 kcal Atomic # 7 Polarization: -116.38 SS G_CDS: -7.09 Total: -123.47 kcal Atomic # 8 Polarization: -58.44 SS G_CDS: -0.10 Total: -58.54 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -79.91 0.55 -79.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724610207.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.112 kcal (2) G-P(sol) polarization free energy of solvation -79.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds