Wall clock time and date at job start Tue Mar 31 2020 20:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.63500 * 2 1 4 4 C 1.54327 * 110.72113 * 236.86128 * 2 1 3 5 5 N 1.47025 * 107.26903 * 263.65253 * 4 2 1 6 6 C 1.34771 * 125.64854 * 181.02696 * 5 4 2 7 7 O 1.21277 * 120.00261 * 180.02562 * 6 5 4 8 8 C 1.50702 * 119.99701 * 0.02562 * 6 5 4 9 9 C 1.53005 * 109.46911 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47252 * 179.97438 * 9 8 6 11 11 C 1.53006 * 115.56089 * 325.69464 * 10 9 8 12 12 C 1.53000 * 117.50223 * 180.02562 * 10 9 8 13 13 C 1.52997 * 117.49889 * 111.37590 * 10 9 8 14 14 C 1.47428 * 108.70140 * 1.28407 * 5 4 2 15 15 C 1.55124 * 104.72287 * 335.55569 * 14 5 4 16 16 H 1.09004 * 111.19498 * 279.18647 * 15 14 5 17 17 N 1.46905 * 110.93750 * 155.29002 * 15 14 5 18 18 C 1.46897 * 111.00001 * 92.95490 * 17 15 14 19 19 C 1.50699 * 109.47232 * 180.02562 * 18 17 15 20 20 O 1.21300 * 119.99786 * 359.97438 * 19 18 17 21 21 N 1.34773 * 120.00400 * 180.02562 * 19 18 17 22 22 C 1.37098 * 120.00260 * 179.97438 * 21 19 18 23 23 H 1.07999 * 120.00195 * 359.97438 * 22 21 19 24 24 C 1.38952 * 120.00095 * 179.97438 * 22 21 19 25 25 N 1.31412 * 119.99825 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00166 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47075 * 0.02562 * 26 24 22 28 28 H 1.48496 * 109.47444 * 119.99973 * 26 24 22 29 29 H 1.48499 * 109.47372 * 240.00332 * 26 24 22 30 30 H 1.09004 * 109.46847 * 181.68674 * 1 2 3 31 31 H 1.08998 * 109.47471 * 301.68539 * 1 2 3 32 32 H 1.09002 * 109.47440 * 61.69047 * 1 2 3 33 33 H 1.08996 * 109.88210 * 144.23157 * 4 2 1 34 34 H 1.09005 * 110.01142 * 23.13705 * 4 2 1 35 35 H 1.08997 * 109.47425 * 60.00427 * 8 6 5 36 36 H 1.08994 * 109.47554 * 299.99862 * 8 6 5 37 37 H 1.09004 * 109.46915 * 60.00615 * 9 8 6 38 38 H 1.08996 * 109.47530 * 300.00258 * 9 8 6 39 39 H 1.09000 * 109.46919 * 274.30794 * 11 10 9 40 40 H 1.09000 * 109.47139 * 34.30150 * 11 10 9 41 41 H 1.08994 * 109.47047 * 154.31069 * 11 10 9 42 42 H 1.08990 * 117.49990 * 145.01974 * 12 10 9 43 43 H 1.09004 * 117.49237 * 359.97438 * 12 10 9 44 44 H 1.08999 * 117.49685 * 0.02562 * 13 10 9 45 45 H 1.08999 * 117.52022 * 214.97106 * 13 10 9 46 46 H 1.08999 * 110.36320 * 94.49164 * 14 5 4 47 47 H 1.08999 * 110.36259 * 216.80695 * 14 5 4 48 48 H 1.00899 * 111.00027 * 329.00375 * 17 15 14 49 49 H 1.08994 * 109.47424 * 300.00197 * 18 17 15 50 50 H 1.09000 * 109.47237 * 60.00289 * 18 17 15 51 51 H 0.96999 * 119.99978 * 359.97438 * 21 19 18 52 52 H 0.96997 * 120.00118 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9141 1.0200 0.0000 4 6 2.0761 -0.7891 -1.2087 5 7 2.3757 -2.1506 -0.7417 6 6 2.8903 -3.1435 -1.4938 7 8 3.0972 -4.2324 -1.0015 8 6 3.2088 -2.9006 -2.9466 9 6 3.7760 -4.1800 -3.5652 10 6 4.0988 -3.9336 -5.0403 11 6 3.1557 -2.9759 -5.7714 12 6 4.6797 -5.1009 -5.8409 13 6 5.5732 -3.9219 -5.4485 14 6 2.0141 -2.2517 0.6840 15 6 2.0828 -0.7948 1.2124 16 1 3.1096 -0.5043 1.4347 17 7 1.2231 -0.6228 2.3911 18 6 1.9806 -0.8377 3.6311 19 6 1.0676 -0.6538 4.8159 20 8 -0.0994 -0.3710 4.6440 21 7 1.5478 -0.8025 6.0663 22 6 0.7173 -0.6347 7.1441 23 1 -0.3217 -0.3829 6.9912 24 6 1.2124 -0.7885 8.4333 25 7 2.4768 -1.0944 8.6194 26 14 0.0806 -0.5606 9.9018 27 1 -1.2852 -0.2231 9.4264 28 1 0.0331 -1.8181 10.6901 29 1 0.5939 0.5402 10.7562 30 1 -0.3633 -1.0273 0.0303 31 1 -0.3634 0.5398 0.8745 32 1 -0.3634 0.4874 -0.9047 33 1 2.9851 -0.3161 -1.5801 34 1 1.3271 -0.8250 -1.9999 35 1 3.9439 -2.1001 -3.0286 36 1 2.2994 -2.6143 -3.4750 37 1 3.0404 -4.9802 -3.4833 38 1 4.6853 -4.4668 -3.0369 39 1 2.2928 -3.5286 -6.1428 40 1 2.8212 -2.1996 -5.0833 41 1 3.6814 -2.5173 -6.6089 42 1 4.3903 -5.1862 -6.8882 43 1 4.8324 -6.0442 -5.3165 44 1 6.3133 -4.0901 -4.6662 45 1 5.8718 -3.2322 -6.2380 46 1 1.0052 -2.6498 0.7921 47 1 2.7298 -2.8809 1.2131 48 1 0.4216 -1.2342 2.3464 49 1 2.3857 -1.8495 3.6387 50 1 2.7980 -0.1187 3.6868 51 1 2.4811 -1.0283 6.2038 52 1 2.8223 -1.2022 9.5194 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724952626.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:46 Heat of formation + Delta-G solvation = -75.877938 kcal Electronic energy + Delta-G solvation = -28951.934612 eV Core-core repulsion = 24950.712180 eV Total energy + Delta-G solvation = -4001.222432 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.40167 -40.20908 -39.51282 -38.76856 -36.21331 -35.55671 -33.53684 -33.25717 -32.98954 -30.15708 -29.06728 -27.94323 -27.47480 -26.20120 -25.17036 -23.58235 -23.24776 -21.18142 -20.78865 -20.20944 -19.93447 -19.60458 -18.37328 -17.67012 -17.38422 -17.02536 -16.53123 -16.35390 -16.21755 -16.03384 -15.71101 -15.42513 -15.08166 -14.92613 -14.53768 -14.31855 -14.19687 -13.91637 -13.75433 -13.56731 -13.50085 -13.38814 -13.19523 -13.14801 -13.05726 -12.89781 -12.84250 -12.41098 -12.39210 -12.12225 -12.10933 -12.04937 -11.91077 -11.78200 -11.56496 -11.51715 -11.00133 -10.89009 -10.47253 -10.34810 -10.02377 -9.74028 -9.35364 -8.47593 -5.96374 1.36186 1.41565 1.55794 1.59050 1.89726 2.04340 2.28756 2.84909 2.89371 3.19696 3.32193 3.51803 3.63631 3.72854 3.75685 3.94393 3.97490 4.03140 4.17274 4.19709 4.25059 4.30690 4.32577 4.43133 4.43965 4.53704 4.58197 4.63172 4.69864 4.76420 4.80493 4.82122 4.90388 4.94913 5.00402 5.04850 5.08410 5.13625 5.18546 5.23847 5.29138 5.29389 5.35010 5.40587 5.49811 5.57745 5.86420 6.06993 6.29292 6.50043 6.58693 7.11328 7.11718 7.55236 8.10035 8.70026 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025170 B = 0.001761 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.170392 B =15894.074654 C =16612.383810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.085 4.085 3 H 0.110 0.890 4 C 0.103 3.897 5 N -0.614 5.614 6 C 0.517 3.483 7 O -0.596 6.596 8 C -0.121 4.121 9 C -0.063 4.063 10 C -0.130 4.130 11 C -0.122 4.122 12 C -0.183 4.183 13 C -0.174 4.174 14 C 0.078 3.922 15 C 0.083 3.917 16 H 0.103 0.897 17 N -0.655 5.655 18 C 0.062 3.938 19 C 0.439 3.561 20 O -0.621 6.621 21 N -0.574 5.574 22 C -0.333 4.333 23 H 0.080 0.920 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.994 3.006 27 H -0.273 1.273 28 H -0.272 1.272 29 H -0.270 1.270 30 H 0.038 0.962 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.106 0.894 46 H 0.058 0.942 47 H 0.056 0.944 48 H 0.346 0.654 49 H 0.060 0.940 50 H 0.109 0.891 51 H 0.396 0.604 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.904 0.152 -30.549 31.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.104 4.104 3 H 0.128 0.872 4 C -0.019 4.019 5 N -0.347 5.347 6 C 0.308 3.692 7 O -0.477 6.477 8 C -0.161 4.161 9 C -0.102 4.102 10 C -0.130 4.130 11 C -0.179 4.179 12 C -0.220 4.220 13 C -0.210 4.210 14 C -0.048 4.048 15 C -0.028 4.028 16 H 0.121 0.879 17 N -0.286 5.286 18 C -0.070 4.070 19 C 0.226 3.774 20 O -0.507 6.507 21 N -0.211 5.211 22 C -0.463 4.463 23 H 0.098 0.902 24 C -0.213 4.213 25 N -0.562 5.562 26 Si 0.817 3.183 27 H -0.197 1.197 28 H -0.198 1.198 29 H -0.195 1.195 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.122 0.878 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.124 0.876 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.166 0.834 49 H 0.078 0.922 50 H 0.127 0.873 51 H 0.230 0.770 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.442 0.384 -30.252 30.740 hybrid contribution 0.134 -1.523 1.457 2.111 sum 5.576 -1.139 -28.795 29.352 Atomic orbital electron populations 1.21646 0.94112 1.01150 1.02449 1.22211 0.96718 0.99961 0.91513 0.87222 1.22472 1.02177 0.79862 0.97374 1.48519 1.62493 1.13160 1.10555 1.21255 0.75693 0.82401 0.89858 1.90699 1.55545 1.26101 1.75323 1.21759 1.04776 1.00837 0.88687 1.20772 1.00535 0.96387 0.92457 1.21530 0.95974 1.01228 0.94302 1.21516 0.98174 0.98110 1.00053 1.23094 1.04726 0.93286 1.00923 1.23236 0.92631 1.01602 1.03567 1.22984 0.99795 0.99330 0.82678 1.22935 0.97717 0.91907 0.90264 0.87916 1.60205 1.09060 1.59810 0.99481 1.21625 0.95637 1.01661 0.88127 1.20828 0.89192 0.82543 0.84832 1.90495 1.19874 1.54328 1.86051 1.41944 1.12474 1.61999 1.04673 1.19719 0.94496 1.46699 0.85381 0.90203 1.26054 0.97939 0.96311 1.01044 1.69680 1.14298 1.48097 1.24113 0.84857 0.77905 0.78255 0.77235 1.19709 1.19757 1.19543 0.94254 0.92829 0.90691 0.88370 0.88864 0.86376 0.86088 0.92782 0.92880 0.92170 0.90230 0.91575 0.87837 0.89676 0.89403 0.87566 0.92341 0.92545 0.83421 0.92176 0.87274 0.77031 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.29 71.98 0.60 -1.84 16 2 C -0.08 -1.31 3.55 -9.60 -0.03 -1.34 16 3 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 4 C 0.10 1.18 6.06 86.73 0.53 1.71 16 5 N -0.61 -11.90 3.32 -811.35 -2.70 -14.60 16 6 C 0.52 11.52 7.85 87.66 0.69 12.21 16 7 O -0.60 -19.41 16.24 -3.02 -0.05 -19.46 16 8 C -0.12 -1.57 3.90 29.85 0.12 -1.45 16 9 C -0.06 -1.02 4.69 30.60 0.14 -0.88 16 10 C -0.13 -1.53 2.47 -52.18 -0.13 -1.65 16 11 C -0.12 -0.94 9.49 71.98 0.68 -0.25 16 12 C -0.18 -2.20 9.97 30.61 0.31 -1.90 16 13 C -0.17 -1.92 9.82 30.61 0.30 -1.62 16 14 C 0.08 1.84 6.19 86.93 0.54 2.38 16 15 C 0.08 1.77 3.19 46.38 0.15 1.92 16 16 H 0.10 2.04 7.83 -2.38 -0.02 2.02 16 17 N -0.65 -19.18 4.96 -488.03 -2.42 -21.60 16 18 C 0.06 2.06 6.03 85.56 0.52 2.58 16 19 C 0.44 20.68 7.82 87.66 0.69 21.36 16 20 O -0.62 -33.98 15.78 -3.09 -0.05 -34.03 16 21 N -0.57 -29.51 5.29 -306.98 -1.62 -31.13 16 22 C -0.33 -19.02 9.68 84.04 0.81 -18.21 16 23 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 24 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 25 N -0.92 -50.06 13.05 21.66 0.28 -49.78 16 26 Si 0.99 43.19 29.55 68.60 2.03 45.22 16 27 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 28 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 29 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 30 H 0.04 0.78 7.44 -2.38 -0.02 0.76 16 31 H 0.05 1.27 7.65 -2.39 -0.02 1.25 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.09 0.74 7.85 -2.38 -0.02 0.72 16 35 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.12 1.01 6.45 -2.39 -0.02 0.99 16 37 H 0.05 1.07 8.10 -2.38 -0.02 1.05 16 38 H 0.05 1.04 7.86 -2.39 -0.02 1.02 16 39 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.08 0.41 5.58 -2.39 -0.01 0.39 16 41 H 0.07 0.41 7.90 -2.39 -0.02 0.39 16 42 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 44 H 0.09 1.07 8.05 -2.39 -0.02 1.05 16 45 H 0.11 0.89 8.05 -2.39 -0.02 0.87 16 46 H 0.06 1.51 7.33 -2.39 -0.02 1.49 16 47 H 0.06 1.56 8.03 -2.39 -0.02 1.54 16 48 H 0.35 11.07 7.53 -89.69 -0.68 10.40 16 49 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 50 H 0.11 3.22 8.09 -2.39 -0.02 3.20 16 51 H 0.40 19.41 7.90 -92.71 -0.73 18.68 16 52 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -74.03 416.24 1.35 -72.68 By element: Atomic # 1 Polarization: 40.46 SS G_CDS: -0.49 Total: 39.98 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 6.36 Total: 12.73 kcal Atomic # 7 Polarization: -110.66 SS G_CDS: -6.46 Total: -117.12 kcal Atomic # 8 Polarization: -53.39 SS G_CDS: -0.10 Total: -53.49 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -74.03 1.35 -72.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724952626.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.197 kcal (2) G-P(sol) polarization free energy of solvation -74.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds