Wall clock time and date at job start Tue Mar 31 2020 21:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47403 * 2 1 4 4 N 1.46503 * 109.47245 * 240.00715 * 2 1 3 5 5 C 1.34771 * 120.00228 * 84.99254 * 4 2 1 6 6 O 1.21279 * 119.99893 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00188 * 180.02562 * 5 4 2 8 8 C 1.53001 * 109.47176 * 300.00624 * 7 5 4 9 9 C 1.52998 * 109.47028 * 60.00596 * 7 5 4 10 10 C 1.53003 * 109.47258 * 180.02562 * 7 5 4 11 11 C 1.52996 * 117.49857 * 248.74808 * 10 7 5 12 12 C 1.53003 * 117.49612 * 180.08429 * 10 7 5 13 13 C 1.52996 * 109.47359 * 120.00551 * 2 1 3 14 14 C 1.53935 * 113.73564 * 201.23249 * 13 2 1 15 15 N 1.48296 * 86.06285 * 138.12918 * 14 13 2 16 16 C 1.46902 * 111.00409 * 222.41947 * 15 14 13 17 17 C 1.50702 * 109.47267 * 289.35248 * 16 15 14 18 18 O 1.21296 * 119.99494 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00134 * 180.02562 * 17 16 15 20 20 C 1.37095 * 120.00203 * 180.02562 * 19 17 16 21 21 H 1.08005 * 120.00145 * 359.97438 * 20 19 17 22 22 C 1.38944 * 120.00446 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00001 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00369 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47215 * 90.00381 * 24 22 20 26 26 H 1.48497 * 109.47270 * 210.00336 * 24 22 20 27 27 H 1.48500 * 109.47360 * 330.00473 * 24 22 20 28 28 C 1.47961 * 90.75572 * 335.31010 * 15 14 13 29 29 H 1.09001 * 109.47629 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46968 * 299.99696 * 1 2 3 31 31 H 1.09002 * 109.47264 * 59.99100 * 1 2 3 32 32 H 0.97005 * 119.99981 * 265.00373 * 4 2 1 33 33 H 1.09001 * 109.47158 * 59.99556 * 8 7 5 34 34 H 1.08998 * 109.47278 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.46915 * 299.99830 * 8 7 5 36 36 H 1.08994 * 109.47615 * 59.99689 * 9 7 5 37 37 H 1.09003 * 109.47212 * 180.02562 * 9 7 5 38 38 H 1.09008 * 109.47166 * 299.99928 * 9 7 5 39 39 H 1.09000 * 115.54707 * 34.41890 * 10 7 5 40 40 H 1.08997 * 117.49953 * 359.97438 * 11 10 7 41 41 H 1.09000 * 117.49509 * 145.02481 * 11 10 7 42 42 H 1.08994 * 117.49692 * 214.97738 * 12 10 7 43 43 H 1.09000 * 117.50139 * 0.02562 * 12 10 7 44 44 H 1.09002 * 112.93723 * 69.66427 * 13 2 1 45 45 H 1.09001 * 113.76001 * 252.50503 * 14 13 2 46 46 H 1.09000 * 113.75996 * 23.86319 * 14 13 2 47 47 H 1.08997 * 109.47246 * 49.35399 * 16 15 14 48 48 H 1.09007 * 109.46957 * 169.35176 * 16 15 14 49 49 H 0.97001 * 119.99910 * 359.97438 * 19 17 16 50 50 H 0.96996 * 119.99994 * 179.97438 * 23 22 20 51 51 H 1.09007 * 113.75652 * 270.36911 * 28 15 14 52 52 H 1.08993 * 113.76177 * 139.00817 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1469 -0.0181 -2.3572 6 8 1.8588 1.1587 -2.4114 7 6 2.6487 -0.7285 -3.5878 8 6 4.0512 -1.2795 -3.3224 9 6 1.7042 -1.8820 -3.9316 10 6 2.7008 0.2549 -4.7588 11 6 1.7045 0.0466 -5.9011 12 6 3.1860 -0.2786 -6.1083 13 6 2.0400 -0.7213 1.2491 14 6 3.4849 -0.3526 1.6310 15 7 2.9987 -0.3230 3.0317 16 6 3.5505 0.8296 3.7564 17 6 5.0224 0.6137 3.9972 18 8 5.5588 -0.4007 3.6042 19 7 5.7425 1.5473 4.6501 20 6 7.0816 1.3512 4.8687 21 1 7.5595 0.4484 4.5180 22 6 7.8241 2.3139 5.5413 23 7 7.2426 3.4123 5.9684 24 14 9.6486 2.0464 5.8398 25 1 10.4232 2.6020 4.7011 26 1 10.0509 2.7326 7.0937 27 1 9.9222 0.5919 5.9618 28 6 1.6208 -0.0476 2.5682 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 2.2490 -1.6317 -1.1528 33 1 4.0145 -1.9800 -2.4881 34 1 4.4143 -1.7929 -4.2127 35 1 4.7241 -0.4577 -3.0775 36 1 0.7051 -1.4895 -4.1207 37 1 2.0674 -2.3961 -4.8215 38 1 1.6675 -2.5825 -3.0973 39 1 2.9622 1.2809 -4.4998 40 1 1.0122 -0.7913 -5.8186 41 1 1.3108 0.9355 -6.3939 42 1 3.7661 0.3966 -6.7372 43 1 3.4677 -1.3302 -6.1619 44 1 1.8527 -1.7949 1.2259 45 1 4.2074 -1.1440 1.4317 46 1 3.8036 0.6200 1.2561 47 1 3.4080 1.7334 3.1641 48 1 3.0378 0.9370 4.7123 49 1 5.3134 2.3584 4.9647 50 1 7.7609 4.0842 6.4383 51 1 1.3954 1.0141 2.4669 52 1 0.8550 -0.5955 3.1172 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725259551.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:26 Heat of formation + Delta-G solvation = -21.626464 kcal Electronic energy + Delta-G solvation = -29771.291883 eV Core-core repulsion = 25772.421971 eV Total energy + Delta-G solvation = -3998.869912 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.83243 -39.95054 -38.08116 -37.59181 -35.33213 -33.90570 -33.59635 -31.34468 -30.94683 -29.32223 -27.84537 -26.24680 -25.48619 -24.89189 -24.10227 -22.53450 -22.41169 -20.93253 -19.98959 -19.19823 -18.68654 -17.87362 -17.39626 -16.65760 -16.09542 -15.94429 -15.31392 -15.29900 -14.92549 -14.68231 -14.62077 -14.22141 -14.03908 -13.70320 -13.53636 -13.23041 -13.07119 -12.96268 -12.65032 -12.51867 -12.48035 -12.45963 -12.22487 -11.87219 -11.74681 -11.70114 -11.46539 -11.43949 -11.11642 -11.07035 -10.88814 -10.61790 -10.59760 -10.57868 -10.38728 -10.28486 -10.20721 -9.71563 -9.49612 -9.22454 -8.62255 -8.20995 -7.95473 -6.40838 -3.81670 2.53155 2.92571 3.18142 3.26654 3.32589 3.56159 3.90104 4.00252 4.20254 4.21365 4.30887 4.47494 4.56064 4.60860 4.70501 4.76526 4.88215 4.95667 5.08077 5.11023 5.20566 5.21148 5.23638 5.27881 5.34410 5.39204 5.43081 5.47547 5.50171 5.54098 5.58208 5.60390 5.72113 5.74780 5.77197 5.81858 5.83728 5.87010 5.91032 5.99565 6.04183 6.11105 6.26444 6.27664 6.42055 6.63644 7.22197 7.36737 7.55780 8.06476 8.11235 8.62272 9.18709 9.55117 10.06821 10.77006 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013800 B = 0.002302 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.515630 B =12160.216429 C =13383.410832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.150 3.850 3 H 0.088 0.912 4 N -0.721 5.721 5 C 0.527 3.473 6 O -0.537 6.537 7 C -0.051 4.051 8 C -0.140 4.140 9 C -0.144 4.144 10 C -0.130 4.130 11 C -0.182 4.182 12 C -0.178 4.178 13 C -0.128 4.128 14 C 0.029 3.971 15 N -0.454 5.454 16 C 0.010 3.990 17 C 0.444 3.556 18 O -0.580 6.580 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.270 1.270 28 C 0.010 3.990 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.399 0.601 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.115 0.885 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.093 0.907 46 H 0.066 0.934 47 H 0.053 0.947 48 H 0.090 0.910 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.070 0.930 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.894 -8.327 -19.550 25.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.045 3.955 3 H 0.106 0.894 4 N -0.372 5.372 5 C 0.313 3.687 6 O -0.413 6.413 7 C -0.054 4.054 8 C -0.197 4.197 9 C -0.201 4.201 10 C -0.148 4.148 11 C -0.219 4.219 12 C -0.215 4.215 13 C -0.148 4.148 14 C -0.100 4.100 15 N -0.176 5.176 16 C -0.122 4.122 17 C 0.229 3.771 18 O -0.464 6.464 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.120 4.120 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.234 0.766 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.133 0.867 40 H 0.117 0.883 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.120 0.880 45 H 0.111 0.889 46 H 0.084 0.916 47 H 0.072 0.928 48 H 0.108 0.892 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.088 0.912 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.506 -8.527 -19.261 25.576 hybrid contribution 0.669 0.914 0.096 1.136 sum -13.836 -7.614 -19.165 24.834 Atomic orbital electron populations 1.22129 0.95106 1.02095 1.02504 1.21043 0.94039 0.97271 0.83151 0.89435 1.46043 1.67553 1.14079 1.09527 1.20406 0.76995 0.87088 0.84230 1.90687 1.49721 1.16009 1.84901 1.20258 0.97260 0.95461 0.92457 1.21853 0.94089 1.01413 1.02392 1.21991 0.99124 0.96636 1.02345 1.22056 1.04815 1.00003 0.87945 1.23135 0.92701 1.03520 1.02540 1.22989 0.97284 1.01869 0.99331 1.23366 0.97444 1.00961 0.92981 1.23849 0.95398 1.01872 0.88863 1.68487 1.01677 1.35451 1.11962 1.22462 0.96446 0.92915 1.00404 1.19687 0.87430 0.85588 0.84347 1.90512 1.71970 1.28740 1.55156 1.41875 1.09373 1.18915 1.49999 1.19686 0.83789 1.05397 1.33908 0.87969 1.25263 1.00585 0.95201 0.96950 1.69613 1.37171 1.08608 1.38953 0.85860 0.82083 0.78659 0.77700 1.20427 1.20906 1.19412 1.23958 0.94193 0.99734 0.94124 0.92431 0.91417 0.92275 0.76615 0.91858 0.91291 0.91660 0.91678 0.91281 0.91957 0.86691 0.88306 0.88972 0.88769 0.88754 0.87968 0.88900 0.91613 0.92848 0.89164 0.77498 0.91877 0.91228 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.31 37.15 0.35 -1.10 16 2 C 0.15 1.56 2.38 -67.93 -0.16 1.40 16 3 H 0.09 1.13 7.42 -51.93 -0.39 0.75 16 4 N -0.72 -6.81 4.86 -53.81 -0.26 -7.08 16 5 C 0.53 5.92 6.45 -10.99 -0.07 5.85 16 6 O -0.54 -8.16 15.31 5.56 0.09 -8.08 16 7 C -0.05 -0.43 0.72 -155.66 -0.11 -0.54 16 8 C -0.14 -1.07 8.21 37.16 0.31 -0.77 16 9 C -0.14 -0.90 6.97 37.16 0.26 -0.64 16 10 C -0.13 -1.19 4.75 -90.62 -0.43 -1.62 16 11 C -0.18 -1.40 9.57 -26.69 -0.26 -1.65 16 12 C -0.18 -1.26 9.39 -26.69 -0.25 -1.51 16 13 C -0.13 -1.40 3.46 -89.69 -0.31 -1.71 16 14 C 0.03 0.44 6.34 -2.57 -0.02 0.42 16 15 N -0.45 -7.48 5.95 -239.43 -1.42 -8.91 16 16 C 0.01 0.18 5.31 -4.97 -0.03 0.15 16 17 C 0.44 10.69 7.59 -10.99 -0.08 10.61 16 18 O -0.58 -15.86 15.13 5.54 0.08 -15.78 16 19 N -0.56 -14.59 5.29 -10.96 -0.06 -14.65 16 20 C -0.30 -8.43 9.68 -14.94 -0.14 -8.57 16 21 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.86 13.05 55.50 0.72 -24.13 16 24 Si 0.93 21.29 29.55 -169.99 -5.02 16.26 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 C 0.01 0.11 6.67 -2.76 -0.02 0.09 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.56 7.52 -51.93 -0.39 0.17 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.40 2.90 7.44 -40.82 -0.30 2.60 16 33 H 0.06 0.43 7.56 -51.93 -0.39 0.04 16 34 H 0.07 0.44 7.29 -51.93 -0.38 0.06 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.44 6.97 -51.93 -0.36 0.08 16 37 H 0.07 0.36 7.08 -51.93 -0.37 -0.01 16 38 H 0.06 0.32 7.57 -51.92 -0.39 -0.07 16 39 H 0.12 1.31 7.47 -51.93 -0.39 0.92 16 40 H 0.10 0.66 5.85 -51.93 -0.30 0.36 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 0.57 7.07 -51.93 -0.37 0.20 16 44 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.09 1.56 8.10 -51.93 -0.42 1.14 16 46 H 0.07 1.07 7.64 -51.93 -0.40 0.67 16 47 H 0.05 0.89 7.69 -51.93 -0.40 0.49 16 48 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16 49 H 0.39 9.70 7.90 -40.82 -0.32 9.37 16 50 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 51 H 0.07 0.77 7.75 -51.92 -0.40 0.37 16 52 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 411.67 15.07 6.20 6.20 Total: -1.00 -33.65 411.67 -9.60 -43.26 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -8.87 Total: 12.00 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.07 Total: 0.89 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -1.02 Total: -54.76 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: 0.17 Total: -23.86 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.65 -9.60 -43.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725259551.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.631 kcal (2) G-P(sol) polarization free energy of solvation -33.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds