Wall clock time and date at job start Tue Mar 31 2020 21:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47403 * 2 1 4 4 N 1.46503 * 109.47245 * 240.00715 * 2 1 3 5 5 C 1.34771 * 120.00228 * 84.99254 * 4 2 1 6 6 O 1.21279 * 119.99893 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00188 * 180.02562 * 5 4 2 8 8 C 1.53001 * 109.47176 * 300.00624 * 7 5 4 9 9 C 1.52998 * 109.47028 * 60.00596 * 7 5 4 10 10 C 1.53003 * 109.47258 * 180.02562 * 7 5 4 11 11 C 1.52996 * 117.49857 * 248.74808 * 10 7 5 12 12 C 1.53003 * 117.49612 * 180.08429 * 10 7 5 13 13 C 1.52996 * 109.47359 * 120.00551 * 2 1 3 14 14 C 1.53935 * 113.73564 * 201.23249 * 13 2 1 15 15 N 1.48296 * 86.06285 * 138.12918 * 14 13 2 16 16 C 1.46902 * 111.00409 * 222.41947 * 15 14 13 17 17 C 1.50702 * 109.47267 * 289.35248 * 16 15 14 18 18 O 1.21296 * 119.99494 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00134 * 180.02562 * 17 16 15 20 20 C 1.37095 * 120.00203 * 180.02562 * 19 17 16 21 21 H 1.08005 * 120.00145 * 359.97438 * 20 19 17 22 22 C 1.38944 * 120.00446 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00001 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00369 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47215 * 90.00381 * 24 22 20 26 26 H 1.48497 * 109.47270 * 210.00336 * 24 22 20 27 27 H 1.48500 * 109.47360 * 330.00473 * 24 22 20 28 28 C 1.47961 * 90.75572 * 335.31010 * 15 14 13 29 29 H 1.09001 * 109.47629 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46968 * 299.99696 * 1 2 3 31 31 H 1.09002 * 109.47264 * 59.99100 * 1 2 3 32 32 H 0.97005 * 119.99981 * 265.00373 * 4 2 1 33 33 H 1.09001 * 109.47158 * 59.99556 * 8 7 5 34 34 H 1.08998 * 109.47278 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.46915 * 299.99830 * 8 7 5 36 36 H 1.08994 * 109.47615 * 59.99689 * 9 7 5 37 37 H 1.09003 * 109.47212 * 180.02562 * 9 7 5 38 38 H 1.09008 * 109.47166 * 299.99928 * 9 7 5 39 39 H 1.09000 * 115.54707 * 34.41890 * 10 7 5 40 40 H 1.08997 * 117.49953 * 359.97438 * 11 10 7 41 41 H 1.09000 * 117.49509 * 145.02481 * 11 10 7 42 42 H 1.08994 * 117.49692 * 214.97738 * 12 10 7 43 43 H 1.09000 * 117.50139 * 0.02562 * 12 10 7 44 44 H 1.09002 * 112.93723 * 69.66427 * 13 2 1 45 45 H 1.09001 * 113.76001 * 252.50503 * 14 13 2 46 46 H 1.09000 * 113.75996 * 23.86319 * 14 13 2 47 47 H 1.08997 * 109.47246 * 49.35399 * 16 15 14 48 48 H 1.09007 * 109.46957 * 169.35176 * 16 15 14 49 49 H 0.97001 * 119.99910 * 359.97438 * 19 17 16 50 50 H 0.96996 * 119.99994 * 179.97438 * 23 22 20 51 51 H 1.09007 * 113.75652 * 270.36911 * 28 15 14 52 52 H 1.08993 * 113.76177 * 139.00817 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1469 -0.0181 -2.3572 6 8 1.8588 1.1587 -2.4114 7 6 2.6487 -0.7285 -3.5878 8 6 4.0512 -1.2795 -3.3224 9 6 1.7042 -1.8820 -3.9316 10 6 2.7008 0.2549 -4.7588 11 6 1.7045 0.0466 -5.9011 12 6 3.1860 -0.2786 -6.1083 13 6 2.0400 -0.7213 1.2491 14 6 3.4849 -0.3526 1.6310 15 7 2.9987 -0.3230 3.0317 16 6 3.5505 0.8296 3.7564 17 6 5.0224 0.6137 3.9972 18 8 5.5588 -0.4007 3.6042 19 7 5.7425 1.5473 4.6501 20 6 7.0816 1.3512 4.8687 21 1 7.5595 0.4484 4.5180 22 6 7.8241 2.3139 5.5413 23 7 7.2426 3.4123 5.9684 24 14 9.6486 2.0464 5.8398 25 1 10.4232 2.6020 4.7011 26 1 10.0509 2.7326 7.0937 27 1 9.9222 0.5919 5.9618 28 6 1.6208 -0.0476 2.5682 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 2.2490 -1.6317 -1.1528 33 1 4.0145 -1.9800 -2.4881 34 1 4.4143 -1.7929 -4.2127 35 1 4.7241 -0.4577 -3.0775 36 1 0.7051 -1.4895 -4.1207 37 1 2.0674 -2.3961 -4.8215 38 1 1.6675 -2.5825 -3.0973 39 1 2.9622 1.2809 -4.4998 40 1 1.0122 -0.7913 -5.8186 41 1 1.3108 0.9355 -6.3939 42 1 3.7661 0.3966 -6.7372 43 1 3.4677 -1.3302 -6.1619 44 1 1.8527 -1.7949 1.2259 45 1 4.2074 -1.1440 1.4317 46 1 3.8036 0.6200 1.2561 47 1 3.4080 1.7334 3.1641 48 1 3.0378 0.9370 4.7123 49 1 5.3134 2.3584 4.9647 50 1 7.7609 4.0842 6.4383 51 1 1.3954 1.0141 2.4669 52 1 0.8550 -0.5955 3.1172 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725259551.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:25 Heat of formation + Delta-G solvation = -46.492090 kcal Electronic energy + Delta-G solvation = -29772.370137 eV Core-core repulsion = 25772.421971 eV Total energy + Delta-G solvation = -3999.948166 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.76428 -41.05985 -39.64639 -38.62406 -36.37379 -35.90939 -34.32783 -33.33455 -32.07099 -30.47134 -28.38492 -27.61453 -26.90030 -25.78488 -25.35149 -23.50701 -23.08365 -21.85727 -21.04982 -20.91441 -19.93058 -19.50535 -18.18010 -17.84767 -17.55861 -16.84546 -16.64821 -16.51291 -16.21667 -15.97868 -15.70638 -15.52706 -15.26189 -15.02286 -14.70675 -14.32300 -13.97670 -13.79371 -13.70604 -13.60965 -13.54217 -13.27364 -13.14702 -13.09245 -13.02588 -12.86586 -12.68929 -12.46972 -12.45267 -12.15008 -11.99585 -11.84943 -11.77770 -11.70461 -11.65907 -11.51345 -11.27008 -10.92944 -10.58215 -10.36099 -10.13876 -10.04657 -9.66047 -8.49362 -5.98482 1.35541 1.39074 1.52275 1.66344 2.01400 2.12787 2.26605 2.80443 2.93158 3.16734 3.23902 3.44375 3.57915 3.62971 3.70217 3.95662 4.07279 4.11460 4.15903 4.17072 4.26501 4.29065 4.33894 4.43522 4.46984 4.49029 4.50997 4.52550 4.71128 4.76620 4.77394 4.80521 4.86797 4.87409 4.89236 4.95478 5.01994 5.04871 5.19430 5.23821 5.27540 5.30392 5.32341 5.37096 5.38016 5.40182 5.56665 5.87686 6.05523 6.56646 6.57846 7.09369 7.28322 7.52250 8.07714 8.68224 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013800 B = 0.002302 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.515630 B =12160.216429 C =13383.410832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.154 3.846 3 H 0.058 0.942 4 N -0.711 5.711 5 C 0.521 3.479 6 O -0.585 6.585 7 C -0.045 4.045 8 C -0.139 4.139 9 C -0.140 4.140 10 C -0.154 4.154 11 C -0.180 4.180 12 C -0.162 4.162 13 C -0.099 4.099 14 C 0.021 3.979 15 N -0.478 5.478 16 C 0.022 3.978 17 C 0.440 3.560 18 O -0.617 6.617 19 N -0.575 5.575 20 C -0.333 4.333 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.271 1.271 26 H -0.269 1.269 27 H -0.272 1.272 28 C 0.016 3.984 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.042 0.958 32 H 0.413 0.587 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.041 0.959 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.114 0.886 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.113 0.887 44 H 0.124 0.876 45 H 0.070 0.930 46 H 0.047 0.953 47 H 0.069 0.931 48 H 0.110 0.890 49 H 0.395 0.605 50 H 0.278 0.722 51 H 0.080 0.920 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.114 -9.970 -20.014 27.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.049 3.951 3 H 0.076 0.924 4 N -0.363 5.363 5 C 0.308 3.692 6 O -0.464 6.464 7 C -0.048 4.048 8 C -0.196 4.196 9 C -0.197 4.197 10 C -0.173 4.173 11 C -0.217 4.217 12 C -0.199 4.199 13 C -0.118 4.118 14 C -0.109 4.109 15 N -0.201 5.201 16 C -0.110 4.110 17 C 0.227 3.773 18 O -0.503 6.503 19 N -0.213 5.213 20 C -0.462 4.462 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.194 1.194 27 H -0.197 1.197 28 C -0.112 4.112 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.250 0.750 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.132 0.868 41 H 0.106 0.894 42 H 0.114 0.886 43 H 0.132 0.868 44 H 0.142 0.858 45 H 0.088 0.912 46 H 0.066 0.934 47 H 0.087 0.913 48 H 0.128 0.872 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.098 0.902 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.750 -10.184 -19.717 27.213 hybrid contribution 1.038 1.443 0.228 1.792 sum -14.712 -8.741 -19.488 25.936 Atomic orbital electron populations 1.22058 0.93336 1.03334 1.02281 1.20914 0.95227 0.95757 0.83242 0.92388 1.45977 1.66799 1.14618 1.08860 1.21010 0.76176 0.86654 0.85327 1.90663 1.51911 1.18154 1.85710 1.20247 0.98079 0.95789 0.90652 1.21873 0.93164 1.00850 1.03732 1.22005 0.98151 0.95786 1.03802 1.21974 1.07125 0.98843 0.89313 1.23221 0.93306 1.03885 1.01267 1.23071 0.96793 1.02811 0.97179 1.23194 0.93632 1.02097 0.92888 1.23783 0.97668 1.00330 0.89071 1.68493 1.04300 1.34962 1.12327 1.22354 0.92112 0.94424 1.02094 1.20745 0.89742 0.84347 0.82437 1.90477 1.73516 1.30144 1.56175 1.41965 1.08990 1.19543 1.50777 1.19650 0.85326 1.05439 1.35834 0.90354 1.26074 1.04727 0.94613 0.96005 1.69676 1.38746 1.08971 1.38816 0.84917 0.76765 0.78423 0.78172 1.19651 1.19389 1.19667 1.24089 0.92093 1.00943 0.94090 0.90371 0.90309 0.93886 0.75045 0.90780 0.89372 0.94012 0.92088 0.89494 0.90396 0.90129 0.86833 0.89446 0.88641 0.86847 0.85789 0.91152 0.93437 0.91268 0.87174 0.77092 0.91268 0.90199 0.86641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.31 71.98 0.67 -1.77 16 2 C 0.15 3.06 2.38 44.99 0.11 3.16 16 3 H 0.06 1.54 7.42 -2.39 -0.02 1.52 16 4 N -0.71 -12.88 4.86 -442.55 -2.15 -15.03 16 5 C 0.52 11.87 6.45 87.66 0.56 12.43 16 6 O -0.58 -18.80 15.31 -3.03 -0.05 -18.85 16 7 C -0.04 -0.72 0.72 -52.93 -0.04 -0.76 16 8 C -0.14 -2.01 8.21 71.98 0.59 -1.42 16 9 C -0.14 -1.40 6.97 71.98 0.50 -0.90 16 10 C -0.15 -2.86 4.75 -10.79 -0.05 -2.92 16 11 C -0.18 -2.61 9.57 30.62 0.29 -2.32 16 12 C -0.16 -2.09 9.39 30.62 0.29 -1.80 16 13 C -0.10 -1.98 3.46 -10.15 -0.04 -2.02 16 14 C 0.02 0.63 6.34 86.34 0.55 1.18 16 15 N -0.48 -15.30 5.95 -911.41 -5.42 -20.73 16 16 C 0.02 0.78 5.31 85.56 0.45 1.24 16 17 C 0.44 21.67 7.59 87.66 0.67 22.34 16 18 O -0.62 -34.90 15.13 -3.08 -0.05 -34.95 16 19 N -0.58 -30.52 5.29 -306.99 -1.62 -32.14 16 20 C -0.33 -19.36 9.68 84.04 0.81 -18.55 16 21 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 22 C -0.01 -0.80 5.50 84.92 0.47 -0.33 16 23 N -0.92 -50.75 13.05 21.66 0.28 -50.47 16 24 Si 0.99 43.70 29.55 68.60 2.03 45.73 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 27 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 28 C 0.02 0.35 6.67 86.41 0.58 0.92 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 1.10 7.52 -2.39 -0.02 1.08 16 31 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.41 5.21 7.44 -92.70 -0.69 4.52 16 33 H 0.07 0.89 7.56 -2.39 -0.02 0.87 16 34 H 0.09 0.93 7.29 -2.39 -0.02 0.92 16 35 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 0.69 6.97 -2.39 -0.02 0.67 16 37 H 0.09 0.59 7.08 -2.39 -0.02 0.57 16 38 H 0.08 0.54 7.57 -2.38 -0.02 0.53 16 39 H 0.08 2.04 7.47 -2.39 -0.02 2.03 16 40 H 0.11 1.30 5.85 -2.39 -0.01 1.28 16 41 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.11 1.04 7.07 -2.39 -0.02 1.02 16 44 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.07 2.45 8.10 -2.39 -0.02 2.43 16 46 H 0.05 1.62 7.64 -2.39 -0.02 1.60 16 47 H 0.07 2.26 7.69 -2.39 -0.02 2.25 16 48 H 0.11 3.51 8.14 -2.38 -0.02 3.49 16 49 H 0.40 19.97 7.90 -92.71 -0.73 19.24 16 50 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 51 H 0.08 1.57 7.75 -2.38 -0.02 1.55 16 52 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -76.60 411.67 -1.06 -77.66 By element: Atomic # 1 Polarization: 40.77 SS G_CDS: -0.49 Total: 40.27 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 6.41 Total: 8.51 kcal Atomic # 7 Polarization: -109.45 SS G_CDS: -8.92 Total: -118.37 kcal Atomic # 8 Polarization: -53.70 SS G_CDS: -0.09 Total: -53.80 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -76.60 -1.06 -77.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725259551.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.167 kcal (2) G-P(sol) polarization free energy of solvation -76.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds