Wall clock time and date at job start Tue Mar 31 2020 20:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47197 * 2 1 4 4 N 1.46502 * 109.47060 * 240.00232 * 2 1 3 5 5 C 1.34783 * 119.99659 * 85.00147 * 4 2 1 6 6 O 1.21282 * 120.00061 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99796 * 180.02562 * 5 4 2 8 8 C 1.52998 * 109.47390 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.29482 * 54.57600 * 8 7 5 10 10 C 1.52909 * 109.30390 * 173.96054 * 8 7 5 11 11 C 1.53350 * 108.67482 * 171.06409 * 10 8 7 12 12 C 1.53070 * 108.42617 * 292.46786 * 11 10 8 13 13 C 1.50179 * 109.88937 * 48.89901 * 12 11 10 14 14 O 1.21275 * 118.24723 * 162.39131 * 13 12 11 15 15 N 1.33355 * 123.50711 * 342.42136 * 13 12 11 16 16 C 1.52998 * 109.47444 * 120.00637 * 2 1 3 17 17 C 1.53040 * 109.45227 * 179.97438 * 16 2 1 18 18 C 1.53191 * 109.31462 * 181.37857 * 17 16 2 19 19 N 1.46929 * 108.77251 * 305.36323 * 18 17 16 20 20 C 1.36943 * 120.62913 * 233.58698 * 19 18 17 21 21 H 1.08000 * 119.99404 * 27.69419 * 20 19 18 22 22 C 1.38804 * 119.99837 * 207.69755 * 20 19 18 23 23 N 1.31618 * 120.00488 * 17.35070 * 22 20 19 24 24 Si 1.86806 * 119.99788 * 197.35548 * 22 20 19 25 25 H 1.48500 * 109.46986 * 59.99796 * 24 22 20 26 26 H 1.48495 * 109.47095 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.46875 * 300.00013 * 24 22 20 28 28 C 1.46924 * 118.74006 * 53.60682 * 19 18 17 29 29 C 1.53048 * 109.45532 * 300.02863 * 16 2 1 30 30 H 1.08998 * 109.46936 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47105 * 299.99522 * 1 2 3 32 32 H 1.08996 * 109.47040 * 59.99541 * 1 2 3 33 33 H 0.96993 * 120.00132 * 264.99891 * 4 2 1 34 34 H 1.09002 * 109.46770 * 299.99946 * 7 5 4 35 35 H 1.08999 * 109.47546 * 59.99453 * 7 5 4 36 36 H 1.09004 * 109.60560 * 290.82291 * 10 8 7 37 37 H 1.09002 * 109.60642 * 51.30983 * 10 8 7 38 38 H 1.09004 * 109.67195 * 172.73780 * 11 10 8 39 39 H 1.08997 * 109.69956 * 52.22218 * 11 10 8 40 40 H 1.09003 * 109.40304 * 288.77555 * 12 11 10 41 41 H 1.08995 * 109.40205 * 169.03022 * 12 11 10 42 42 H 0.97004 * 117.94664 * 182.19989 * 15 13 12 43 43 H 1.09003 * 109.46286 * 59.99466 * 16 2 1 44 44 H 1.09004 * 109.49060 * 301.32691 * 17 16 2 45 45 H 1.08994 * 109.49889 * 61.42294 * 17 16 2 46 46 H 1.08996 * 109.58661 * 185.57370 * 18 17 16 47 47 H 1.08999 * 109.58740 * 65.14438 * 18 17 16 48 48 H 0.97003 * 120.00197 * 179.97438 * 23 22 20 49 49 H 1.09004 * 109.58430 * 186.60482 * 28 19 18 50 50 H 1.08998 * 109.70564 * 66.25092 * 28 19 18 51 51 H 1.09005 * 109.49661 * 298.57714 * 29 16 2 52 52 H 1.08999 * 109.49769 * 58.67499 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0181 -2.3572 6 8 1.8582 1.1586 -2.4116 7 6 2.6488 -0.7285 -3.5878 8 6 2.6999 0.2545 -4.7591 9 1 3.2958 1.1220 -4.4756 10 6 3.3492 -0.4278 -5.9637 11 6 3.1923 0.4830 -7.1874 12 6 1.7077 0.5488 -7.5543 13 6 0.8911 0.8436 -6.3289 14 8 -0.2427 1.2473 -6.4781 15 7 1.3463 0.6857 -5.0854 16 6 2.0401 -0.7214 1.2491 17 6 3.5705 -0.7216 1.2483 18 6 4.0777 -1.4744 2.4823 19 7 3.4751 -0.8767 3.6816 20 6 4.2610 -0.4510 4.7191 21 1 5.2746 -0.1287 4.5317 22 6 3.7549 -0.4340 6.0115 23 7 2.6749 -1.1269 6.3046 24 14 4.6066 0.5725 7.3349 25 1 4.6211 2.0029 6.9363 26 1 3.8747 0.4230 8.6183 27 1 6.0013 0.0910 7.5020 28 6 2.0132 -0.7449 3.7468 29 6 1.5292 -0.0002 2.4986 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 2.2490 -1.6317 -1.1527 34 1 3.6480 -1.1211 -3.3987 35 1 1.9760 -1.5504 -3.8327 36 1 4.4081 -0.5926 -5.7638 37 1 2.8575 -1.3820 -6.1526 38 1 3.7593 0.0744 -8.0240 39 1 3.5565 1.4826 -6.9506 40 1 1.3961 -0.4070 -7.9757 41 1 1.5515 1.3363 -8.2916 42 1 0.7386 0.8696 -4.3521 43 1 1.6766 -1.7490 1.2489 44 1 3.9336 -1.2148 0.3465 45 1 3.9345 0.3054 1.2736 46 1 5.1631 -1.3930 2.5394 47 1 3.7910 -2.5238 2.4136 48 1 2.3214 -1.1152 7.2079 49 1 1.7365 -0.1820 4.6383 50 1 1.5562 -1.7338 3.7825 51 1 1.9125 1.0202 2.5121 52 1 0.4394 0.0202 2.4869 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725765577.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:56 Heat of formation + Delta-G solvation = -78.963077 kcal Electronic energy + Delta-G solvation = -29997.065933 eV Core-core repulsion = 25995.709719 eV Total energy + Delta-G solvation = -4001.356214 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.88131 -39.80428 -38.10974 -36.93255 -35.38552 -33.54008 -32.99338 -31.86791 -31.10889 -29.75593 -29.21031 -27.87002 -25.44825 -24.14726 -23.10321 -22.56816 -22.05383 -20.67212 -20.48822 -19.48940 -19.14798 -17.60480 -17.21256 -16.68476 -16.51592 -16.22458 -15.58104 -15.11749 -14.91117 -14.62525 -14.40211 -14.11848 -14.07179 -13.63142 -13.50909 -13.45051 -13.42576 -13.32336 -12.96843 -12.54545 -12.37900 -12.18449 -11.97354 -11.84854 -11.69593 -11.47791 -11.44396 -11.38935 -11.16115 -11.00784 -10.71960 -10.46546 -10.27870 -10.19181 -10.09875 -9.95813 -9.85705 -9.57760 -9.45967 -9.29751 -9.02964 -8.47924 -6.69214 -5.80605 -3.22505 2.43384 2.47867 3.03708 3.06874 3.37149 3.43171 3.44637 4.07130 4.18604 4.22807 4.37810 4.48387 4.60560 4.72123 4.78924 4.91770 5.01720 5.07698 5.12732 5.18397 5.29978 5.30884 5.36167 5.40820 5.43557 5.48778 5.50442 5.63423 5.68936 5.74104 5.82625 5.92067 6.03983 6.13826 6.23671 6.29400 6.40706 6.47408 6.58292 6.62241 6.68735 6.73952 6.81527 6.95317 7.17638 7.33927 7.42883 7.63949 7.77625 8.02005 8.10699 8.43588 9.19938 9.83612 10.39898 11.27829 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027746 B = 0.002044 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.914566 B =13693.172032 C =14143.286942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.086 0.914 4 N -0.717 5.717 5 C 0.509 3.491 6 O -0.542 6.542 7 C -0.158 4.158 8 C 0.156 3.844 9 H 0.085 0.915 10 C -0.134 4.134 11 C -0.124 4.124 12 C -0.136 4.136 13 C 0.516 3.484 14 O -0.563 6.563 15 N -0.707 5.707 16 C -0.084 4.084 17 C -0.125 4.125 18 C 0.146 3.854 19 N -0.592 5.592 20 C -0.252 4.252 21 H 0.064 0.936 22 C 0.002 3.998 23 N -0.903 5.903 24 Si 0.902 3.098 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.283 1.283 28 C 0.171 3.829 29 C -0.134 4.134 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.399 0.601 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.406 0.594 43 H 0.066 0.934 44 H 0.047 0.953 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.015 0.985 48 H 0.254 0.746 49 H 0.088 0.912 50 H 0.017 0.983 51 H 0.056 0.944 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.025 -2.445 -25.113 25.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.104 0.896 4 N -0.367 5.367 5 C 0.295 3.705 6 O -0.420 6.420 7 C -0.199 4.199 8 C 0.051 3.949 9 H 0.103 0.897 10 C -0.172 4.172 11 C -0.161 4.161 12 C -0.176 4.176 13 C 0.303 3.697 14 O -0.443 6.443 15 N -0.361 5.361 16 C -0.103 4.103 17 C -0.164 4.164 18 C 0.019 3.981 19 N -0.315 5.315 20 C -0.382 4.382 21 H 0.082 0.918 22 C -0.197 4.197 23 N -0.548 5.548 24 Si 0.732 3.268 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.209 1.209 28 C 0.045 3.955 29 C -0.174 4.174 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.234 0.766 34 H 0.129 0.871 35 H 0.118 0.882 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.244 0.756 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.033 0.967 48 H 0.064 0.936 49 H 0.106 0.894 50 H 0.035 0.965 51 H 0.075 0.925 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.314 -1.456 -25.210 25.254 hybrid contribution 0.363 -0.048 1.181 1.236 sum 0.678 -1.503 -24.029 24.086 Atomic orbital electron populations 1.22198 0.95520 1.01916 1.02406 1.21190 0.93717 0.97579 0.83565 0.89596 1.46172 1.66612 1.14065 1.09882 1.20570 0.77861 0.87438 0.84670 1.90724 1.50395 1.15887 1.84990 1.22167 1.04599 0.99922 0.93204 1.20706 0.83961 0.96926 0.93352 0.89699 1.21975 1.01980 0.99243 0.93963 1.21657 0.95369 1.00891 0.98231 1.21658 0.95054 1.04828 0.96043 1.20197 0.87455 0.76962 0.85108 1.90764 1.20263 1.46788 1.86443 1.45674 1.14415 1.67834 1.08132 1.21333 0.96398 0.99246 0.93290 1.22037 0.94517 1.01325 0.98531 1.20887 0.96524 0.93874 0.86811 1.44048 1.02043 1.69875 1.15527 1.19134 0.97009 1.36385 0.85679 0.91818 1.25026 0.98445 0.99172 0.97037 1.70019 1.24552 1.40805 1.19394 0.86379 0.78898 0.80495 0.81062 1.21025 1.21634 1.20910 1.20767 0.83245 0.96816 0.94627 1.22270 0.98874 1.00089 0.96130 0.92699 0.90949 0.92774 0.76645 0.87095 0.88162 0.89388 0.90617 0.90270 0.90879 0.88327 0.88257 0.75634 0.91538 0.93475 0.92392 0.92976 0.96695 0.93586 0.89428 0.96520 0.92521 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.13 37.16 0.34 -1.67 16 2 C 0.14 1.85 2.16 -67.93 -0.15 1.71 16 3 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 4 N -0.72 -7.23 4.36 -53.80 -0.23 -7.47 16 5 C 0.51 5.25 7.44 -10.98 -0.08 5.16 16 6 O -0.54 -7.69 14.22 5.56 0.08 -7.61 16 7 C -0.16 -0.96 5.34 -27.88 -0.15 -1.11 16 8 C 0.16 1.08 2.64 -68.38 -0.18 0.90 16 9 H 0.09 0.69 7.94 -51.93 -0.41 0.28 16 10 C -0.13 -0.55 5.30 -26.60 -0.14 -0.69 16 11 C -0.12 -0.55 6.03 -26.51 -0.16 -0.71 16 12 C -0.14 -0.90 6.03 -28.10 -0.17 -1.07 16 13 C 0.52 5.65 7.71 -11.87 -0.09 5.56 16 14 O -0.56 -8.84 17.78 5.56 0.10 -8.74 16 15 N -0.71 -7.01 5.01 -54.86 -0.27 -7.28 16 16 C -0.08 -1.24 1.79 -90.58 -0.16 -1.40 16 17 C -0.12 -1.97 5.22 -26.61 -0.14 -2.11 16 18 C 0.15 2.89 6.52 -3.71 -0.02 2.86 16 19 N -0.59 -14.40 3.00 -172.32 -0.52 -14.92 16 20 C -0.25 -6.83 9.58 -15.06 -0.14 -6.97 16 21 H 0.06 1.70 7.89 -52.49 -0.41 1.28 16 22 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 23 N -0.90 -25.88 11.19 55.49 0.62 -25.26 16 24 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 C 0.17 3.93 5.31 -3.71 -0.02 3.91 16 29 C -0.13 -2.40 5.04 -26.61 -0.13 -2.53 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.91 6.40 -51.93 -0.33 0.58 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.40 3.13 8.39 -40.82 -0.34 2.79 16 34 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 37 H 0.08 0.27 8.11 -51.93 -0.42 -0.15 16 38 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.07 0.36 8.13 -51.93 -0.42 -0.06 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.41 4.89 6.94 -40.82 -0.28 4.61 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.05 0.61 7.40 -51.93 -0.38 0.22 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 47 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 49 H 0.09 2.29 6.04 -51.93 -0.31 1.98 16 50 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 52 H 0.05 0.87 6.36 -51.93 -0.33 0.54 16 LS Contribution 399.87 15.07 6.03 6.03 Total: -1.00 -33.92 399.87 -9.81 -43.73 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -9.09 Total: 3.23 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -1.49 Total: 1.80 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.40 Total: -54.93 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 0.18 Total: -16.36 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.92 -9.81 -43.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725765577.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.234 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds