Wall clock time and date at job start Tue Mar 31 2020 20:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47197 * 2 1 4 4 N 1.46502 * 109.47060 * 240.00232 * 2 1 3 5 5 C 1.34783 * 119.99659 * 85.00147 * 4 2 1 6 6 O 1.21282 * 120.00061 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99796 * 180.02562 * 5 4 2 8 8 C 1.52998 * 109.47390 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.29482 * 54.57600 * 8 7 5 10 10 C 1.52909 * 109.30390 * 173.96054 * 8 7 5 11 11 C 1.53350 * 108.67482 * 171.06409 * 10 8 7 12 12 C 1.53070 * 108.42617 * 292.46786 * 11 10 8 13 13 C 1.50179 * 109.88937 * 48.89901 * 12 11 10 14 14 O 1.21275 * 118.24723 * 162.39131 * 13 12 11 15 15 N 1.33355 * 123.50711 * 342.42136 * 13 12 11 16 16 C 1.52998 * 109.47444 * 120.00637 * 2 1 3 17 17 C 1.53040 * 109.45227 * 179.97438 * 16 2 1 18 18 C 1.53191 * 109.31462 * 181.37857 * 17 16 2 19 19 N 1.46929 * 108.77251 * 305.36323 * 18 17 16 20 20 C 1.36943 * 120.62913 * 233.58698 * 19 18 17 21 21 H 1.08000 * 119.99404 * 27.69419 * 20 19 18 22 22 C 1.38804 * 119.99837 * 207.69755 * 20 19 18 23 23 N 1.31618 * 120.00488 * 17.35070 * 22 20 19 24 24 Si 1.86806 * 119.99788 * 197.35548 * 22 20 19 25 25 H 1.48500 * 109.46986 * 59.99796 * 24 22 20 26 26 H 1.48495 * 109.47095 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.46875 * 300.00013 * 24 22 20 28 28 C 1.46924 * 118.74006 * 53.60682 * 19 18 17 29 29 C 1.53048 * 109.45532 * 300.02863 * 16 2 1 30 30 H 1.08998 * 109.46936 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47105 * 299.99522 * 1 2 3 32 32 H 1.08996 * 109.47040 * 59.99541 * 1 2 3 33 33 H 0.96993 * 120.00132 * 264.99891 * 4 2 1 34 34 H 1.09002 * 109.46770 * 299.99946 * 7 5 4 35 35 H 1.08999 * 109.47546 * 59.99453 * 7 5 4 36 36 H 1.09004 * 109.60560 * 290.82291 * 10 8 7 37 37 H 1.09002 * 109.60642 * 51.30983 * 10 8 7 38 38 H 1.09004 * 109.67195 * 172.73780 * 11 10 8 39 39 H 1.08997 * 109.69956 * 52.22218 * 11 10 8 40 40 H 1.09003 * 109.40304 * 288.77555 * 12 11 10 41 41 H 1.08995 * 109.40205 * 169.03022 * 12 11 10 42 42 H 0.97004 * 117.94664 * 182.19989 * 15 13 12 43 43 H 1.09003 * 109.46286 * 59.99466 * 16 2 1 44 44 H 1.09004 * 109.49060 * 301.32691 * 17 16 2 45 45 H 1.08994 * 109.49889 * 61.42294 * 17 16 2 46 46 H 1.08996 * 109.58661 * 185.57370 * 18 17 16 47 47 H 1.08999 * 109.58740 * 65.14438 * 18 17 16 48 48 H 0.97003 * 120.00197 * 179.97438 * 23 22 20 49 49 H 1.09004 * 109.58430 * 186.60482 * 28 19 18 50 50 H 1.08998 * 109.70564 * 66.25092 * 28 19 18 51 51 H 1.09005 * 109.49661 * 298.57714 * 29 16 2 52 52 H 1.08999 * 109.49769 * 58.67499 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0181 -2.3572 6 8 1.8582 1.1586 -2.4116 7 6 2.6488 -0.7285 -3.5878 8 6 2.6999 0.2545 -4.7591 9 1 3.2958 1.1220 -4.4756 10 6 3.3492 -0.4278 -5.9637 11 6 3.1923 0.4830 -7.1874 12 6 1.7077 0.5488 -7.5543 13 6 0.8911 0.8436 -6.3289 14 8 -0.2427 1.2473 -6.4781 15 7 1.3463 0.6857 -5.0854 16 6 2.0401 -0.7214 1.2491 17 6 3.5705 -0.7216 1.2483 18 6 4.0777 -1.4744 2.4823 19 7 3.4751 -0.8767 3.6816 20 6 4.2610 -0.4510 4.7191 21 1 5.2746 -0.1287 4.5317 22 6 3.7549 -0.4340 6.0115 23 7 2.6749 -1.1269 6.3046 24 14 4.6066 0.5725 7.3349 25 1 4.6211 2.0029 6.9363 26 1 3.8747 0.4230 8.6183 27 1 6.0013 0.0910 7.5020 28 6 2.0132 -0.7449 3.7468 29 6 1.5292 -0.0002 2.4986 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 2.2490 -1.6317 -1.1527 34 1 3.6480 -1.1211 -3.3987 35 1 1.9760 -1.5504 -3.8327 36 1 4.4081 -0.5926 -5.7638 37 1 2.8575 -1.3820 -6.1526 38 1 3.7593 0.0744 -8.0240 39 1 3.5565 1.4826 -6.9506 40 1 1.3961 -0.4070 -7.9757 41 1 1.5515 1.3363 -8.2916 42 1 0.7386 0.8696 -4.3521 43 1 1.6766 -1.7490 1.2489 44 1 3.9336 -1.2148 0.3465 45 1 3.9345 0.3054 1.2736 46 1 5.1631 -1.3930 2.5394 47 1 3.7910 -2.5238 2.4136 48 1 2.3214 -1.1152 7.2079 49 1 1.7365 -0.1820 4.6383 50 1 1.5562 -1.7338 3.7825 51 1 1.9125 1.0202 2.5121 52 1 0.4394 0.0202 2.4869 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725765577.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:55 Heat of formation + Delta-G solvation = -102.499012 kcal Electronic energy + Delta-G solvation = -29998.086528 eV Core-core repulsion = 25995.709719 eV Total energy + Delta-G solvation = -4002.376809 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.62319 -40.73371 -39.43264 -37.74881 -36.72220 -34.49996 -34.06335 -33.08254 -32.15569 -31.38918 -30.51162 -28.45032 -27.15201 -25.05315 -24.15038 -23.65215 -23.32716 -21.91041 -21.42211 -20.61987 -20.01404 -18.75069 -18.28296 -17.87011 -17.28473 -17.15802 -16.78943 -16.31606 -15.90908 -15.80832 -15.39688 -15.31425 -15.04562 -14.87636 -14.76308 -14.47075 -14.36543 -14.25185 -14.01211 -13.89374 -13.57296 -13.39399 -12.99566 -12.84593 -12.74288 -12.61756 -12.52682 -12.39715 -12.19624 -12.17623 -12.02618 -11.87555 -11.78838 -11.78202 -11.48062 -11.24205 -11.07331 -10.89540 -10.64725 -10.51639 -10.08667 -9.99666 -8.66522 -7.87325 -5.31378 1.45273 1.48047 1.54377 1.63114 1.70060 2.24484 2.37399 2.50927 3.26685 3.56501 3.67858 3.70802 3.72318 3.77495 3.97027 3.97989 4.07627 4.11541 4.26732 4.33583 4.41779 4.49279 4.56903 4.60219 4.63086 4.68997 4.74942 4.76986 4.81649 4.90647 4.93190 5.01195 5.02314 5.04498 5.12945 5.13523 5.15288 5.20251 5.30666 5.37769 5.40150 5.45147 5.54585 5.58872 5.66174 5.78776 5.80997 6.39932 6.44978 6.64407 7.16070 7.20890 7.33986 7.89119 8.38954 9.18404 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027746 B = 0.002044 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.914566 B =13693.172032 C =14143.286942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.157 3.843 3 H 0.061 0.939 4 N -0.709 5.709 5 C 0.504 3.496 6 O -0.586 6.586 7 C -0.147 4.147 8 C 0.149 3.851 9 H 0.070 0.930 10 C -0.127 4.127 11 C -0.120 4.120 12 C -0.130 4.130 13 C 0.507 3.493 14 O -0.624 6.624 15 N -0.707 5.707 16 C -0.072 4.072 17 C -0.111 4.111 18 C 0.140 3.860 19 N -0.613 5.613 20 C -0.262 4.262 21 H 0.063 0.937 22 C -0.052 4.052 23 N -0.933 5.933 24 Si 0.963 3.037 25 H -0.281 1.281 26 H -0.294 1.294 27 H -0.274 1.274 28 C 0.177 3.823 29 C -0.123 4.123 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.415 0.585 34 H 0.147 0.853 35 H 0.121 0.879 36 H 0.114 0.886 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.064 0.936 40 H 0.117 0.883 41 H 0.098 0.902 42 H 0.391 0.609 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.041 0.959 46 H 0.049 0.951 47 H 0.020 0.980 48 H 0.249 0.751 49 H 0.049 0.951 50 H 0.000 1.000 51 H 0.042 0.958 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.830 -4.052 -27.579 28.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.052 3.948 3 H 0.079 0.921 4 N -0.361 5.361 5 C 0.292 3.708 6 O -0.467 6.467 7 C -0.186 4.186 8 C 0.045 3.955 9 H 0.088 0.912 10 C -0.164 4.164 11 C -0.158 4.158 12 C -0.170 4.170 13 C 0.296 3.704 14 O -0.508 6.508 15 N -0.356 5.356 16 C -0.091 4.091 17 C -0.150 4.150 18 C 0.015 3.985 19 N -0.336 5.336 20 C -0.392 4.392 21 H 0.081 0.919 22 C -0.247 4.247 23 N -0.580 5.580 24 Si 0.791 3.209 25 H -0.208 1.208 26 H -0.220 1.220 27 H -0.200 1.200 28 C 0.051 3.949 29 C -0.162 4.162 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.252 0.748 34 H 0.165 0.835 35 H 0.139 0.861 36 H 0.132 0.868 37 H 0.108 0.892 38 H 0.124 0.876 39 H 0.083 0.917 40 H 0.135 0.865 41 H 0.117 0.883 42 H 0.226 0.774 43 H 0.097 0.903 44 H 0.106 0.894 45 H 0.059 0.941 46 H 0.068 0.932 47 H 0.038 0.962 48 H 0.058 0.942 49 H 0.067 0.933 50 H 0.018 0.982 51 H 0.060 0.940 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.188 -3.107 -27.704 27.964 hybrid contribution -0.179 0.452 1.954 2.014 sum 2.009 -2.655 -25.750 25.964 Atomic orbital electron populations 1.22144 0.95033 1.02643 1.01764 1.20767 0.93947 0.96216 0.83895 0.92096 1.46020 1.66399 1.14700 1.08954 1.21366 0.76809 0.87021 0.85584 1.90721 1.52150 1.18130 1.85663 1.22209 1.06787 0.99480 0.90169 1.20962 0.82193 0.97072 0.95300 0.91181 1.22012 1.03289 0.99136 0.91998 1.21682 0.93671 1.00922 0.99481 1.21699 0.95982 1.05629 0.93681 1.21062 0.87109 0.75806 0.86453 1.90726 1.23017 1.49701 1.87342 1.45875 1.15390 1.66926 1.07455 1.21178 0.95766 0.99580 0.92585 1.21879 0.94918 1.00080 0.98088 1.21082 0.96408 0.94400 0.86633 1.44339 1.02417 1.70578 1.16312 1.19452 0.97287 1.35800 0.86671 0.91885 1.25748 0.99431 1.00457 0.99070 1.70165 1.26050 1.42355 1.19392 0.85405 0.78128 0.78997 0.78326 1.20776 1.22020 1.20002 1.20572 0.82982 0.95823 0.95488 1.22068 0.99953 0.98780 0.95412 0.91219 0.91528 0.93534 0.74792 0.83510 0.86090 0.86772 0.89209 0.87564 0.91739 0.86475 0.88334 0.77382 0.90275 0.89416 0.94059 0.93213 0.96171 0.94158 0.93298 0.98185 0.93955 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 9.13 71.98 0.66 -3.03 16 2 C 0.16 3.80 2.16 44.99 0.10 3.89 16 3 H 0.06 1.83 7.58 -2.39 -0.02 1.81 16 4 N -0.71 -12.23 4.36 -442.52 -1.93 -14.16 16 5 C 0.50 9.25 7.44 87.66 0.65 9.91 16 6 O -0.59 -16.37 14.22 -3.04 -0.04 -16.41 16 7 C -0.15 -1.22 5.34 29.85 0.16 -1.06 16 8 C 0.15 1.69 2.64 45.10 0.12 1.81 16 9 H 0.07 1.02 7.94 -2.39 -0.02 1.01 16 10 C -0.13 -0.51 5.30 30.68 0.16 -0.35 16 11 C -0.12 -0.68 6.03 30.73 0.19 -0.49 16 12 C -0.13 -1.48 6.03 29.71 0.18 -1.30 16 13 C 0.51 11.00 7.71 87.71 0.68 11.68 16 14 O -0.62 -20.40 17.78 -3.01 -0.05 -20.46 16 15 N -0.71 -13.56 5.01 -446.66 -2.24 -15.79 16 16 C -0.07 -2.01 1.79 -10.77 -0.02 -2.02 16 17 C -0.11 -3.26 5.22 30.67 0.16 -3.10 16 18 C 0.14 5.39 6.52 86.36 0.56 5.95 16 19 N -0.61 -30.12 3.00 -699.10 -2.09 -32.21 16 20 C -0.26 -14.36 9.58 84.03 0.81 -13.56 16 21 H 0.06 3.38 7.89 -2.91 -0.02 3.36 16 22 C -0.05 -2.89 4.91 84.86 0.42 -2.48 16 23 N -0.93 -55.06 11.19 21.65 0.24 -54.82 16 24 Si 0.96 45.02 29.59 68.60 2.03 47.05 16 25 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 26 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 27 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 28 C 0.18 8.33 5.31 86.36 0.46 8.79 16 29 C -0.12 -4.38 5.04 30.67 0.15 -4.22 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.62 6.40 -2.39 -0.02 1.61 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.42 4.67 8.39 -92.71 -0.78 3.89 16 34 H 0.15 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.11 -0.05 8.14 -2.38 -0.02 -0.07 16 37 H 0.09 0.18 8.11 -2.39 -0.02 0.16 16 38 H 0.11 0.11 8.14 -2.38 -0.02 0.09 16 39 H 0.06 0.49 8.13 -2.39 -0.02 0.48 16 40 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.39 9.60 6.94 -92.70 -0.64 8.96 16 43 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.09 1.89 7.40 -2.38 -0.02 1.88 16 45 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.05 1.91 7.93 -2.39 -0.02 1.89 16 47 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 49 H 0.05 2.66 6.04 -2.38 -0.01 2.65 16 50 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 51 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 52 H 0.07 2.29 6.36 -2.39 -0.02 2.28 16 Total: -1.00 -79.49 399.87 0.84 -78.65 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -0.50 Total: 17.73 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: 5.43 Total: 10.43 kcal Atomic # 7 Polarization: -110.97 SS G_CDS: -6.02 Total: -116.99 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -0.10 Total: -36.87 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -79.49 0.84 -78.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725765577.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.850 kcal (2) G-P(sol) polarization free energy of solvation -79.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds