Wall clock time and date at job start Tue Mar 31 2020 21:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 5 5 C 1.36931 * 119.99971 * 274.99678 * 4 2 1 6 6 H 1.08005 * 120.00425 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00390 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99556 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00553 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47196 * 60.00050 * 9 7 5 11 11 H 1.48500 * 109.47547 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46942 * 299.99859 * 9 7 5 13 13 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 14 14 C 1.53040 * 109.46312 * 180.02562 * 13 2 1 15 15 C 1.53194 * 109.31121 * 178.61246 * 14 13 2 16 16 N 1.46923 * 108.77716 * 54.64007 * 15 14 13 17 17 C 1.34774 * 120.63498 * 126.36135 * 16 15 14 18 18 O 1.21274 * 120.00360 * 180.02562 * 17 16 15 19 19 C 1.50708 * 119.99562 * 0.02562 * 17 16 15 20 20 C 1.53005 * 109.46670 * 179.97438 * 19 17 16 21 21 H 1.08994 * 109.60236 * 54.68207 * 20 19 17 22 22 C 1.53352 * 109.59829 * 175.00047 * 20 19 17 23 23 C 1.53072 * 108.41949 * 187.29002 * 22 20 19 24 24 C 1.50182 * 109.89141 * 311.09520 * 23 22 20 25 25 O 1.21277 * 118.24279 * 197.56325 * 24 23 22 26 26 N 1.33350 * 123.50626 * 17.59429 * 24 23 22 27 27 C 1.45756 * 124.10917 * 357.76407 * 26 24 23 28 28 C 1.46927 * 118.73640 * 306.39032 * 16 15 14 29 29 C 1.53046 * 109.46065 * 59.99861 * 13 2 1 30 30 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 31 31 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 32 32 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 33 33 H 0.97004 * 120.00223 * 94.99655 * 4 2 1 34 34 H 0.96997 * 119.99679 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.46098 * 300.02872 * 13 2 1 36 36 H 1.08995 * 109.49816 * 298.56656 * 14 13 2 37 37 H 1.09004 * 109.49570 * 58.66330 * 14 13 2 38 38 H 1.08997 * 109.59215 * 294.84754 * 15 14 13 39 39 H 1.09006 * 109.57985 * 174.42675 * 15 14 13 40 40 H 1.08995 * 109.47096 * 299.99809 * 19 17 16 41 41 H 1.09003 * 109.47144 * 60.00044 * 19 17 16 42 42 H 1.08992 * 109.67463 * 307.02249 * 22 20 19 43 43 H 1.08999 * 109.67408 * 67.55886 * 22 20 19 44 44 H 1.08994 * 109.39995 * 71.23244 * 23 22 20 45 45 H 1.09005 * 109.39706 * 190.97661 * 23 22 20 46 46 H 0.97003 * 117.94379 * 177.77503 * 26 24 23 47 47 H 1.08994 * 109.30371 * 258.76797 * 27 26 24 48 48 H 1.08998 * 109.30105 * 139.38990 * 27 26 24 49 49 H 1.08995 * 109.58232 * 293.82053 * 28 16 15 50 50 H 1.09001 * 109.70171 * 173.46484 * 28 16 15 51 51 H 1.08997 * 109.49615 * 301.34091 * 29 13 2 52 52 H 1.09007 * 109.48994 * 61.40466 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0405 2.4242 7 6 2.6123 -0.6617 3.5090 8 7 2.9253 -1.9388 3.4499 9 14 2.7901 0.2700 5.1183 10 1 1.4674 0.8058 5.5288 11 1 3.3003 -0.6481 6.1681 12 1 3.7446 1.3931 4.9371 13 6 2.0400 -0.7213 -1.2492 14 6 3.5704 -0.7217 -1.2487 15 6 4.0772 -1.4747 -2.4828 16 7 3.4744 -0.8771 -3.6820 17 6 4.2477 -0.4574 -4.7030 18 8 3.7381 0.0347 -5.6873 19 6 5.7459 -0.5997 -4.6213 20 6 6.3806 -0.0512 -5.9008 21 1 6.0465 0.9733 -6.0647 22 6 7.9083 -0.0792 -5.7701 23 6 8.5106 0.6394 -6.9800 24 6 7.8873 0.1215 -8.2444 25 8 8.4573 0.3331 -9.2937 26 7 6.7404 -0.5582 -8.2749 27 6 5.9748 -0.9233 -7.0896 28 6 2.0125 -0.7450 -3.7469 29 6 1.5297 0.0003 -2.4987 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 2.2490 -1.6318 1.1526 34 1 3.2493 -2.3958 4.2417 35 1 1.6761 -1.7488 -1.2493 36 1 3.9345 0.3053 -1.2742 37 1 3.9337 -1.2148 -0.3470 38 1 3.7905 -2.5241 -2.4140 39 1 5.1627 -1.3934 -2.5401 40 1 6.1176 -0.0410 -3.7625 41 1 6.0053 -1.6525 -4.5099 42 1 8.2076 0.4302 -4.8542 43 1 8.2557 -1.1121 -5.7464 44 1 8.3229 1.7098 -6.8957 45 1 9.5859 0.4627 -7.0077 46 1 6.3940 -0.8266 -9.1403 47 1 6.1608 -1.9699 -6.8487 48 1 4.9123 -0.7864 -7.2907 49 1 1.5575 -1.7348 -3.7811 50 1 1.7335 -0.1835 -4.6385 51 1 0.4399 0.0214 -2.4870 52 1 1.9132 1.0206 -2.5116 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731998648.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:01 Heat of formation + Delta-G solvation = -82.770663 kcal Electronic energy + Delta-G solvation = -29936.101674 eV Core-core repulsion = 25934.580351 eV Total energy + Delta-G solvation = -4001.521323 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.87328 -40.08255 -38.21787 -36.86297 -35.46576 -33.77297 -33.00526 -31.94414 -30.92590 -30.77508 -28.44593 -27.17161 -25.33980 -24.78419 -23.76035 -22.92234 -22.27994 -21.07679 -19.76402 -19.44877 -18.96256 -17.55626 -17.36764 -16.95861 -16.40466 -16.16682 -15.60879 -15.52136 -15.01199 -14.63385 -14.44138 -14.09840 -13.95009 -13.89971 -13.75588 -13.68951 -13.49680 -13.16417 -12.84425 -12.60183 -12.48768 -12.27173 -12.10998 -11.91909 -11.66356 -11.58488 -11.35449 -11.25649 -11.20835 -11.02915 -10.88976 -10.76298 -10.33606 -10.31450 -10.23621 -10.03899 -9.89903 -9.75350 -9.62068 -9.31611 -8.94699 -8.65918 -6.99423 -5.81237 -3.09090 2.38706 2.47213 2.87055 3.02872 3.39864 3.45236 3.45374 4.11455 4.18581 4.25546 4.38944 4.54144 4.56698 4.80607 4.90655 4.96457 4.99265 5.01921 5.07027 5.15570 5.17976 5.25523 5.31340 5.34999 5.42782 5.44544 5.49079 5.50018 5.62280 5.67605 5.73588 5.86865 5.87168 5.89276 5.96397 6.06625 6.15818 6.26495 6.36816 6.42661 6.48257 6.49569 6.60989 6.73101 6.89745 7.06044 7.08408 7.31216 7.65985 7.94274 8.03072 8.37916 9.49124 10.06955 10.41794 11.41327 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018603 B = 0.002166 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.787915 B =12923.715274 C =13945.992663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.178 3.822 3 H 0.044 0.956 4 N -0.722 5.722 5 C -0.235 4.235 6 H 0.068 0.932 7 C -0.014 4.014 8 N -0.934 5.934 9 Si 0.904 3.096 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.089 4.089 14 C -0.123 4.123 15 C 0.104 3.896 16 N -0.606 5.606 17 C 0.513 3.487 18 O -0.549 6.549 19 C -0.135 4.135 20 C -0.088 4.088 21 H 0.090 0.910 22 C -0.121 4.121 23 C -0.134 4.134 24 C 0.518 3.482 25 O -0.566 6.566 26 N -0.716 5.716 27 C 0.109 3.891 28 C 0.112 3.888 29 C -0.128 4.128 30 H 0.051 0.949 31 H 0.038 0.962 32 H 0.045 0.955 33 H 0.383 0.617 34 H 0.255 0.745 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.093 0.907 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.399 0.601 47 H 0.061 0.939 48 H 0.097 0.903 49 H 0.065 0.935 50 H 0.088 0.912 51 H 0.077 0.923 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.708 0.108 -18.427 19.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.068 3.932 3 H 0.062 0.938 4 N -0.364 5.364 5 C -0.367 4.367 6 H 0.086 0.914 7 C -0.210 4.210 8 N -0.583 5.583 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.217 1.217 12 H -0.214 1.214 13 C -0.109 4.109 14 C -0.162 4.162 15 C -0.019 4.019 16 N -0.339 5.339 17 C 0.301 3.699 18 O -0.428 6.428 19 C -0.175 4.175 20 C -0.107 4.107 21 H 0.109 0.891 22 C -0.159 4.159 23 C -0.174 4.174 24 C 0.305 3.695 25 O -0.445 6.445 26 N -0.367 5.367 27 C -0.015 4.015 28 C -0.010 4.010 29 C -0.167 4.167 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.216 0.784 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.122 0.878 41 H 0.116 0.884 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.234 0.766 47 H 0.079 0.921 48 H 0.115 0.885 49 H 0.083 0.917 50 H 0.107 0.893 51 H 0.096 0.904 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.837 0.652 -19.092 19.975 hybrid contribution -0.184 -0.050 1.001 1.019 sum 5.652 0.601 -18.091 18.963 Atomic orbital electron populations 1.22497 0.99550 1.00749 0.99866 1.20215 0.91598 0.95310 0.86093 0.93766 1.42400 1.78111 1.10591 1.05278 1.19172 1.36284 0.93768 0.87427 0.91419 1.24704 1.02353 0.95963 0.97945 1.69638 1.51066 1.08601 1.28965 0.86310 0.77761 0.78613 0.83749 1.21375 1.21749 1.21351 1.21375 0.94937 0.99915 0.94660 1.21897 0.96122 1.00953 0.97180 1.21936 0.98006 0.97486 0.84461 1.48210 1.07297 1.60610 1.17760 1.20606 0.89348 0.77454 0.82444 1.90648 1.75482 1.45105 1.31563 1.21734 0.92262 1.04009 0.99525 1.21216 0.94865 1.01313 0.93314 0.89138 1.21771 0.94203 1.01689 0.98250 1.21629 1.01808 1.02177 0.91803 1.20229 0.80434 0.77365 0.91459 1.90755 1.61365 1.58323 1.34076 1.45472 1.23628 1.56898 1.10721 1.21642 0.97359 0.97860 0.84686 1.21631 0.79116 1.00742 0.99552 1.22015 1.01199 0.99604 0.93842 0.93026 0.94315 0.93603 0.78356 0.93530 0.91407 0.91935 0.88877 0.91130 0.89955 0.87829 0.88400 0.89966 0.90840 0.88091 0.88029 0.76623 0.92051 0.88482 0.91675 0.89349 0.90438 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.14 37.16 0.34 -2.46 16 2 C 0.18 3.18 2.47 -67.93 -0.17 3.01 16 3 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 4 N -0.72 -16.52 4.41 -53.43 -0.24 -16.75 16 5 C -0.24 -6.16 9.93 -15.06 -0.15 -6.31 16 6 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -26.80 13.06 55.49 0.72 -26.08 16 9 Si 0.90 21.64 29.55 -169.99 -5.02 16.61 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 C -0.09 -1.25 1.79 -90.58 -0.16 -1.41 16 14 C -0.12 -1.63 5.22 -26.61 -0.14 -1.77 16 15 C 0.10 1.02 6.34 -3.71 -0.02 0.99 16 16 N -0.61 -6.29 2.97 -172.77 -0.51 -6.81 16 17 C 0.51 5.27 7.46 -10.98 -0.08 5.19 16 18 O -0.55 -7.17 13.48 5.56 0.07 -7.10 16 19 C -0.14 -0.91 3.52 -27.88 -0.10 -1.01 16 20 C -0.09 -0.61 1.89 -90.48 -0.17 -0.78 16 21 H 0.09 0.78 7.93 -51.93 -0.41 0.37 16 22 C -0.12 -0.67 5.33 -26.51 -0.14 -0.81 16 23 C -0.13 -0.96 6.03 -28.10 -0.17 -1.12 16 24 C 0.52 5.37 7.71 -11.87 -0.09 5.28 16 25 O -0.57 -8.24 17.78 5.56 0.10 -8.14 16 26 N -0.72 -6.17 5.45 -61.39 -0.33 -6.50 16 27 C 0.11 0.81 6.12 -4.49 -0.03 0.79 16 28 C 0.11 1.21 6.43 -3.71 -0.02 1.19 16 29 C -0.13 -1.51 5.04 -26.61 -0.13 -1.64 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.04 0.54 6.40 -51.93 -0.33 0.21 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.38 9.28 7.58 -40.82 -0.31 8.97 16 34 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 1.48 7.41 -51.93 -0.38 1.09 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.63 5.93 -51.93 -0.31 0.32 16 40 H 0.10 0.61 7.69 -51.93 -0.40 0.21 16 41 H 0.10 0.50 7.91 -51.93 -0.41 0.09 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.37 8.13 -51.93 -0.42 -0.05 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.40 3.19 8.80 -40.82 -0.36 2.83 16 47 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 48 H 0.10 0.88 6.23 -51.93 -0.32 0.56 16 49 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 50 H 0.09 1.02 7.01 -51.93 -0.36 0.65 16 51 H 0.08 0.86 6.36 -51.93 -0.33 0.53 16 52 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 399.04 15.07 6.01 6.01 Total: -1.00 -32.57 399.04 -9.50 -42.07 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -8.97 Total: 8.02 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -1.34 Total: -1.35 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.36 Total: -56.14 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.17 Total: -15.24 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.57 -9.50 -42.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731998648.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.699 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds