Wall clock time and date at job start Tue Mar 31 2020 21:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 5 5 C 1.36931 * 119.99971 * 274.99678 * 4 2 1 6 6 H 1.08005 * 120.00425 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00390 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99556 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00553 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47196 * 60.00050 * 9 7 5 11 11 H 1.48500 * 109.47547 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46942 * 299.99859 * 9 7 5 13 13 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 14 14 C 1.53040 * 109.46312 * 180.02562 * 13 2 1 15 15 C 1.53194 * 109.31121 * 178.61246 * 14 13 2 16 16 N 1.46923 * 108.77716 * 54.64007 * 15 14 13 17 17 C 1.34774 * 120.63498 * 126.36135 * 16 15 14 18 18 O 1.21274 * 120.00360 * 180.02562 * 17 16 15 19 19 C 1.50708 * 119.99562 * 0.02562 * 17 16 15 20 20 C 1.53005 * 109.46670 * 179.97438 * 19 17 16 21 21 H 1.08994 * 109.60236 * 54.68207 * 20 19 17 22 22 C 1.53352 * 109.59829 * 175.00047 * 20 19 17 23 23 C 1.53072 * 108.41949 * 187.29002 * 22 20 19 24 24 C 1.50182 * 109.89141 * 311.09520 * 23 22 20 25 25 O 1.21277 * 118.24279 * 197.56325 * 24 23 22 26 26 N 1.33350 * 123.50626 * 17.59429 * 24 23 22 27 27 C 1.45756 * 124.10917 * 357.76407 * 26 24 23 28 28 C 1.46927 * 118.73640 * 306.39032 * 16 15 14 29 29 C 1.53046 * 109.46065 * 59.99861 * 13 2 1 30 30 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 31 31 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 32 32 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 33 33 H 0.97004 * 120.00223 * 94.99655 * 4 2 1 34 34 H 0.96997 * 119.99679 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.46098 * 300.02872 * 13 2 1 36 36 H 1.08995 * 109.49816 * 298.56656 * 14 13 2 37 37 H 1.09004 * 109.49570 * 58.66330 * 14 13 2 38 38 H 1.08997 * 109.59215 * 294.84754 * 15 14 13 39 39 H 1.09006 * 109.57985 * 174.42675 * 15 14 13 40 40 H 1.08995 * 109.47096 * 299.99809 * 19 17 16 41 41 H 1.09003 * 109.47144 * 60.00044 * 19 17 16 42 42 H 1.08992 * 109.67463 * 307.02249 * 22 20 19 43 43 H 1.08999 * 109.67408 * 67.55886 * 22 20 19 44 44 H 1.08994 * 109.39995 * 71.23244 * 23 22 20 45 45 H 1.09005 * 109.39706 * 190.97661 * 23 22 20 46 46 H 0.97003 * 117.94379 * 177.77503 * 26 24 23 47 47 H 1.08994 * 109.30371 * 258.76797 * 27 26 24 48 48 H 1.08998 * 109.30105 * 139.38990 * 27 26 24 49 49 H 1.08995 * 109.58232 * 293.82053 * 28 16 15 50 50 H 1.09001 * 109.70171 * 173.46484 * 28 16 15 51 51 H 1.08997 * 109.49615 * 301.34091 * 29 13 2 52 52 H 1.09007 * 109.48994 * 61.40466 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0405 2.4242 7 6 2.6123 -0.6617 3.5090 8 7 2.9253 -1.9388 3.4499 9 14 2.7901 0.2700 5.1183 10 1 1.4674 0.8058 5.5288 11 1 3.3003 -0.6481 6.1681 12 1 3.7446 1.3931 4.9371 13 6 2.0400 -0.7213 -1.2492 14 6 3.5704 -0.7217 -1.2487 15 6 4.0772 -1.4747 -2.4828 16 7 3.4744 -0.8771 -3.6820 17 6 4.2477 -0.4574 -4.7030 18 8 3.7381 0.0347 -5.6873 19 6 5.7459 -0.5997 -4.6213 20 6 6.3806 -0.0512 -5.9008 21 1 6.0465 0.9733 -6.0647 22 6 7.9083 -0.0792 -5.7701 23 6 8.5106 0.6394 -6.9800 24 6 7.8873 0.1215 -8.2444 25 8 8.4573 0.3331 -9.2937 26 7 6.7404 -0.5582 -8.2749 27 6 5.9748 -0.9233 -7.0896 28 6 2.0125 -0.7450 -3.7469 29 6 1.5297 0.0003 -2.4987 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 2.2490 -1.6318 1.1526 34 1 3.2493 -2.3958 4.2417 35 1 1.6761 -1.7488 -1.2493 36 1 3.9345 0.3053 -1.2742 37 1 3.9337 -1.2148 -0.3470 38 1 3.7905 -2.5241 -2.4140 39 1 5.1627 -1.3934 -2.5401 40 1 6.1176 -0.0410 -3.7625 41 1 6.0053 -1.6525 -4.5099 42 1 8.2076 0.4302 -4.8542 43 1 8.2557 -1.1121 -5.7464 44 1 8.3229 1.7098 -6.8957 45 1 9.5859 0.4627 -7.0077 46 1 6.3940 -0.8266 -9.1403 47 1 6.1608 -1.9699 -6.8487 48 1 4.9123 -0.7864 -7.2907 49 1 1.5575 -1.7348 -3.7811 50 1 1.7335 -0.1835 -4.6385 51 1 0.4399 0.0214 -2.4870 52 1 1.9132 1.0206 -2.5116 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731998648.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:00 Heat of formation + Delta-G solvation = -104.337426 kcal Electronic energy + Delta-G solvation = -29937.036879 eV Core-core repulsion = 25934.580351 eV Total energy + Delta-G solvation = -4002.456528 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.61633 -40.92104 -39.27224 -37.69253 -36.76136 -34.65932 -34.35000 -32.83199 -32.12122 -31.79306 -29.99285 -27.93639 -26.52221 -25.59933 -25.13402 -23.91694 -23.05189 -22.16556 -21.05757 -20.13165 -19.79626 -19.06803 -18.22827 -17.99615 -17.16280 -16.93317 -16.71824 -16.34325 -16.28591 -15.68310 -15.47619 -15.33696 -15.10389 -14.93083 -14.71670 -14.44734 -14.29082 -14.17772 -14.04438 -13.74163 -13.52210 -13.37930 -13.04545 -12.93409 -12.82712 -12.71218 -12.50371 -12.28658 -12.22459 -12.18987 -12.01936 -11.90131 -11.78372 -11.74629 -11.44166 -11.28180 -11.14395 -10.87534 -10.81344 -10.58146 -10.05990 -9.54172 -8.91905 -7.88731 -5.14392 1.49764 1.50704 1.56695 1.60771 1.70897 2.09977 2.36074 2.59864 3.44781 3.49422 3.57982 3.72716 3.81243 3.83246 3.89369 3.93320 4.03666 4.23448 4.30094 4.40408 4.41755 4.47225 4.52219 4.55397 4.59122 4.65376 4.67344 4.78108 4.81218 4.84453 4.89977 4.92639 4.96140 4.98934 5.00243 5.10348 5.14410 5.17735 5.19470 5.29954 5.37693 5.44005 5.52195 5.56540 5.68081 5.73550 5.78675 6.34410 6.34873 6.52137 7.18449 7.25273 7.41162 8.19316 8.42710 9.34096 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018603 B = 0.002166 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.787915 B =12923.715274 C =13945.992663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.172 3.828 3 H 0.033 0.967 4 N -0.730 5.730 5 C -0.231 4.231 6 H 0.068 0.932 7 C -0.073 4.073 8 N -0.965 5.965 9 Si 0.962 3.038 10 H -0.284 1.284 11 H -0.297 1.297 12 H -0.280 1.280 13 C -0.080 4.080 14 C -0.119 4.119 15 C 0.112 3.888 16 N -0.608 5.608 17 C 0.509 3.491 18 O -0.581 6.581 19 C -0.129 4.129 20 C -0.085 4.085 21 H 0.071 0.929 22 C -0.112 4.112 23 C -0.132 4.132 24 C 0.510 3.490 25 O -0.617 6.617 26 N -0.712 5.712 27 C 0.110 3.890 28 C 0.114 3.886 29 C -0.117 4.117 30 H 0.028 0.972 31 H 0.071 0.929 32 H 0.043 0.957 33 H 0.374 0.626 34 H 0.249 0.751 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.107 0.893 45 H 0.110 0.890 46 H 0.399 0.601 47 H 0.081 0.919 48 H 0.081 0.919 49 H 0.076 0.924 50 H 0.082 0.918 51 H 0.086 0.914 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.283 0.000 -18.577 19.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.064 3.936 3 H 0.051 0.949 4 N -0.370 5.370 5 C -0.363 4.363 6 H 0.086 0.914 7 C -0.265 4.265 8 N -0.617 5.617 9 Si 0.792 3.208 10 H -0.211 1.211 11 H -0.224 1.224 12 H -0.206 1.206 13 C -0.099 4.099 14 C -0.157 4.157 15 C -0.010 4.010 16 N -0.340 5.340 17 C 0.299 3.701 18 O -0.462 6.462 19 C -0.169 4.169 20 C -0.104 4.104 21 H 0.090 0.910 22 C -0.149 4.149 23 C -0.172 4.172 24 C 0.299 3.701 25 O -0.500 6.500 26 N -0.360 5.360 27 C -0.014 4.014 28 C -0.009 4.009 29 C -0.156 4.156 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.206 0.794 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.130 0.870 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.121 0.879 43 H 0.104 0.896 44 H 0.125 0.875 45 H 0.128 0.872 46 H 0.233 0.767 47 H 0.099 0.901 48 H 0.099 0.901 49 H 0.094 0.906 50 H 0.100 0.900 51 H 0.105 0.895 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.372 0.563 -19.244 20.280 hybrid contribution -0.467 0.032 0.978 1.084 sum 5.905 0.595 -18.267 19.207 Atomic orbital electron populations 1.22374 0.98373 1.00738 1.00361 1.20443 0.92295 0.94749 0.86134 0.94891 1.42537 1.78263 1.10245 1.05949 1.19480 1.34400 0.93855 0.88592 0.91448 1.25380 1.03455 0.96824 1.00854 1.69774 1.52811 1.09847 1.29227 0.85379 0.77676 0.77459 0.80255 1.21098 1.22353 1.20624 1.21247 0.95637 0.99464 0.93583 1.21777 0.95419 1.00660 0.97848 1.21908 0.99590 0.97101 0.82401 1.48271 1.07126 1.60642 1.17990 1.21237 0.90752 0.76421 0.81683 1.90648 1.76362 1.46378 1.32764 1.21790 0.89327 1.05955 0.99818 1.21166 0.96018 1.00082 0.93147 0.91032 1.21749 0.92601 1.02492 0.98100 1.21672 1.02163 1.02548 0.90785 1.20870 0.80418 0.76811 0.91965 1.90727 1.62862 1.60403 1.36047 1.45543 1.23173 1.55953 1.11369 1.21703 0.96166 0.99091 0.84432 1.21562 0.79827 1.01041 0.98423 1.21909 1.01675 0.98929 0.93087 0.95319 0.91010 0.93824 0.79363 0.94212 0.91487 0.92750 0.91789 0.90253 0.87003 0.86119 0.85728 0.87935 0.89590 0.87534 0.87164 0.76658 0.90126 0.90114 0.90566 0.89966 0.89541 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.18 9.14 71.98 0.66 -4.52 16 2 C 0.17 6.08 2.47 44.99 0.11 6.19 16 3 H 0.03 1.24 8.08 -2.39 -0.02 1.22 16 4 N -0.73 -33.57 4.41 -322.94 -1.42 -34.99 16 5 C -0.23 -12.15 9.93 84.03 0.83 -11.31 16 6 H 0.07 3.48 7.83 -2.91 -0.02 3.46 16 7 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 8 N -0.97 -56.09 13.06 21.65 0.28 -55.81 16 9 Si 0.96 44.66 29.55 68.60 2.03 46.68 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 11 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 13 C -0.08 -2.13 1.79 -10.77 -0.02 -2.15 16 14 C -0.12 -2.98 5.22 30.67 0.16 -2.82 16 15 C 0.11 1.87 6.34 86.36 0.55 2.42 16 16 N -0.61 -11.05 2.97 -818.91 -2.43 -13.49 16 17 C 0.51 9.19 7.46 87.66 0.65 9.85 16 18 O -0.58 -14.40 13.48 -3.01 -0.04 -14.44 16 19 C -0.13 -1.27 3.52 29.85 0.11 -1.16 16 20 C -0.08 -0.96 1.89 -10.70 -0.02 -0.98 16 21 H 0.07 1.12 7.93 -2.39 -0.02 1.10 16 22 C -0.11 -0.86 5.33 30.74 0.16 -0.70 16 23 C -0.13 -1.64 6.03 29.71 0.18 -1.46 16 24 C 0.51 10.31 7.71 87.72 0.68 10.98 16 25 O -0.62 -18.28 17.78 -3.02 -0.05 -18.33 16 26 N -0.71 -11.73 5.45 -467.33 -2.55 -14.28 16 27 C 0.11 1.45 6.12 86.49 0.53 1.98 16 28 C 0.11 2.23 6.43 86.36 0.56 2.78 16 29 C -0.12 -2.54 5.04 30.67 0.15 -2.39 16 30 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.85 6.40 -2.39 -0.02 1.83 16 32 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.37 18.39 7.58 -92.71 -0.70 17.69 16 34 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.06 2.01 7.41 -2.39 -0.02 2.00 16 38 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.11 1.23 5.93 -2.38 -0.01 1.22 16 40 H 0.12 0.87 7.69 -2.39 -0.02 0.85 16 41 H 0.12 0.63 7.91 -2.39 -0.02 0.61 16 42 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.09 0.51 8.13 -2.39 -0.02 0.49 16 44 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 46 H 0.40 6.37 8.80 -92.71 -0.82 5.55 16 47 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 48 H 0.08 1.39 6.23 -2.39 -0.01 1.37 16 49 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.08 1.76 7.01 -2.39 -0.02 1.74 16 51 H 0.09 1.71 6.36 -2.39 -0.02 1.70 16 52 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -72.41 399.04 0.98 -71.44 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: -0.59 Total: 30.04 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 5.76 Total: 3.17 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -6.12 Total: -118.57 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -0.09 Total: -32.77 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -72.41 0.98 -71.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731998648.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.900 kcal (2) G-P(sol) polarization free energy of solvation -72.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds