Wall clock time and date at job start Tue Mar 31 2020 21:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47060 * 2 1 4 4 N 1.46495 * 109.47493 * 119.99668 * 2 1 3 5 5 C 1.36938 * 120.00489 * 275.00668 * 4 2 1 6 6 H 1.08005 * 119.99619 * 359.97438 * 5 4 2 7 7 C 1.38807 * 120.00296 * 179.97438 * 5 4 2 8 8 N 1.31619 * 119.99955 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99968 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46911 * 59.99800 * 9 7 5 11 11 H 1.48498 * 109.46875 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47125 * 299.99709 * 9 7 5 13 13 C 1.52999 * 109.47281 * 240.00290 * 2 1 3 14 14 C 1.53038 * 109.46149 * 59.99526 * 13 2 1 15 15 C 1.53202 * 109.31193 * 181.38700 * 14 13 2 16 16 N 1.46926 * 108.77451 * 305.36712 * 15 14 13 17 17 C 1.34780 * 120.62899 * 233.58840 * 16 15 14 18 18 O 1.21280 * 119.99901 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99645 * 180.02562 * 17 16 15 20 20 C 1.52999 * 109.46776 * 179.97438 * 19 17 16 21 21 H 1.09003 * 109.73395 * 305.40129 * 20 19 17 22 22 C 1.53345 * 109.60300 * 185.00072 * 20 19 17 23 23 C 1.53076 * 108.42724 * 172.71039 * 22 20 19 24 24 C 1.50181 * 109.88819 * 48.89612 * 23 22 20 25 25 O 1.21276 * 118.24118 * 162.41822 * 24 23 22 26 26 N 1.33348 * 123.50691 * 342.42517 * 24 23 22 27 27 C 1.45754 * 124.11454 * 2.21198 * 26 24 23 28 28 C 1.46924 * 118.73957 * 53.86018 * 16 15 14 29 29 C 1.53040 * 109.46073 * 180.02562 * 13 2 1 30 30 H 1.09002 * 109.47182 * 60.00005 * 1 2 3 31 31 H 1.09005 * 109.47060 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47403 * 300.00251 * 1 2 3 33 33 H 0.97004 * 119.99584 * 94.99658 * 4 2 1 34 34 H 0.96998 * 119.99995 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.45631 * 300.02382 * 13 2 1 36 36 H 1.09002 * 109.49476 * 61.44193 * 14 13 2 37 37 H 1.08996 * 109.49965 * 301.33762 * 14 13 2 38 38 H 1.08994 * 109.58286 * 185.58239 * 15 14 13 39 39 H 1.08998 * 109.70143 * 65.22210 * 15 14 13 40 40 H 1.08997 * 109.47452 * 59.99812 * 19 17 16 41 41 H 1.08991 * 109.47240 * 299.99312 * 19 17 16 42 42 H 1.09000 * 109.67410 * 52.97795 * 22 20 19 43 43 H 1.08994 * 109.70393 * 292.46118 * 22 20 19 44 44 H 1.08992 * 109.39915 * 169.03068 * 23 22 20 45 45 H 1.09004 * 109.39849 * 288.77287 * 23 22 20 46 46 H 0.97010 * 117.94119 * 182.22487 * 26 24 23 47 47 H 1.08996 * 109.30278 * 220.62192 * 27 26 24 48 48 H 1.08998 * 109.12855 * 101.13302 * 27 26 24 49 49 H 1.08998 * 109.58560 * 65.92553 * 28 16 15 50 50 H 1.09000 * 109.58861 * 186.34855 * 28 16 15 51 51 H 1.09001 * 109.49781 * 298.56231 * 29 13 2 52 52 H 1.09003 * 109.50055 * 58.65869 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.1491 -0.0074 2.3758 6 1 1.8925 1.0406 2.4242 7 6 2.6114 -0.6618 3.5092 8 7 2.9236 -1.9391 3.4504 9 14 2.7904 0.2702 5.1182 10 1 1.4684 0.8079 5.5284 11 1 3.2993 -0.6482 6.1683 12 1 3.7464 1.3920 4.9367 13 6 2.0400 -0.7212 -1.2493 14 6 1.5297 0.0004 -2.4986 15 6 2.0135 -0.7443 -3.7470 16 7 3.4753 -0.8771 -3.6816 17 6 4.2492 -0.4584 -4.7025 18 8 3.7401 0.0330 -5.6874 19 6 5.7471 -0.6020 -4.6205 20 6 6.3826 -0.0544 -5.9000 21 1 5.9428 -0.5448 -6.7685 22 6 7.8941 -0.3119 -5.8747 23 6 8.4742 0.0778 -7.2366 24 6 7.9833 1.4415 -7.6298 25 8 8.5810 2.0376 -8.5006 26 7 6.9255 2.0320 -7.0726 27 6 6.1441 1.4535 -5.9867 28 6 4.0770 -1.4805 -2.4846 29 6 3.5704 -0.7216 -1.2487 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 2.2490 -1.6317 1.1526 34 1 3.2463 -2.3965 4.2425 35 1 1.6762 -1.7487 -1.2493 36 1 1.9137 1.0205 -2.5119 37 1 0.4400 0.0214 -2.4871 38 1 1.7373 -0.1811 -4.6383 39 1 1.5580 -1.7339 -3.7842 40 1 6.0056 -1.6550 -4.5087 41 1 6.1192 -0.0434 -3.7618 42 1 8.0833 -1.3682 -5.6839 43 1 8.3565 0.2907 -5.0929 44 1 9.5625 0.0878 -7.1771 45 1 8.1605 -0.6498 -7.9853 46 1 6.6591 2.9011 -7.4115 47 1 5.0853 1.6412 -6.1650 48 1 6.4393 1.9195 -5.0466 49 1 3.7862 -2.5289 -2.4185 50 1 5.1627 -1.4033 -2.5429 51 1 3.9345 0.3055 -1.2741 52 1 3.9338 -1.2146 -0.3470 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731998650.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:05 Heat of formation + Delta-G solvation = -82.782723 kcal Electronic energy + Delta-G solvation = -30015.081083 eV Core-core repulsion = 26013.559236 eV Total energy + Delta-G solvation = -4001.521846 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.86542 -40.07251 -38.20811 -36.85485 -35.46452 -33.76143 -33.00609 -31.94095 -30.90442 -30.77202 -28.44644 -27.15962 -25.33465 -24.78131 -23.76060 -22.92551 -22.27701 -21.07455 -19.76911 -19.39751 -19.00466 -17.54704 -17.35306 -16.97827 -16.34279 -16.15644 -15.62099 -15.55136 -14.96218 -14.67622 -14.44834 -14.06943 -13.94674 -13.89138 -13.72717 -13.65796 -13.52374 -13.17959 -12.84931 -12.60619 -12.44849 -12.29676 -12.12393 -11.90437 -11.67315 -11.55951 -11.36062 -11.25575 -11.20611 -11.03100 -10.89111 -10.76711 -10.33796 -10.31677 -10.23851 -10.03008 -9.88967 -9.76086 -9.62254 -9.29533 -8.94873 -8.65551 -6.99603 -5.81380 -3.09292 2.40122 2.47249 2.87049 3.04892 3.39754 3.45142 3.45279 4.11782 4.18998 4.25839 4.39231 4.54056 4.56980 4.79965 4.91944 4.96637 5.01047 5.01680 5.06296 5.16998 5.19464 5.23997 5.31904 5.34933 5.41929 5.44704 5.48723 5.49946 5.61449 5.69031 5.73876 5.86169 5.88089 5.88973 5.96093 6.06347 6.15400 6.26128 6.36727 6.42580 6.49291 6.50350 6.60675 6.72961 6.89529 7.08173 7.08351 7.31167 7.65798 7.95924 8.03072 8.37775 9.48992 10.06812 10.41604 11.41188 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016158 B = 0.002250 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.504728 B =12439.115670 C =13308.501642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.178 3.822 3 H 0.044 0.956 4 N -0.723 5.723 5 C -0.235 4.235 6 H 0.068 0.932 7 C -0.013 4.013 8 N -0.934 5.934 9 Si 0.904 3.096 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.090 4.090 14 C -0.128 4.128 15 C 0.112 3.888 16 N -0.606 5.606 17 C 0.513 3.487 18 O -0.549 6.549 19 C -0.135 4.135 20 C -0.087 4.087 21 H 0.090 0.910 22 C -0.122 4.122 23 C -0.134 4.134 24 C 0.518 3.482 25 O -0.566 6.566 26 N -0.716 5.716 27 C 0.107 3.893 28 C 0.103 3.897 29 C -0.123 4.123 30 H 0.038 0.962 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.383 0.617 34 H 0.255 0.745 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.399 0.601 47 H 0.098 0.902 48 H 0.063 0.937 49 H 0.071 0.929 50 H 0.082 0.918 51 H 0.062 0.938 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.710 0.273 -18.339 19.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.068 3.932 3 H 0.062 0.938 4 N -0.364 5.364 5 C -0.367 4.367 6 H 0.086 0.914 7 C -0.209 4.209 8 N -0.583 5.583 9 Si 0.735 3.265 10 H -0.214 1.214 11 H -0.217 1.217 12 H -0.214 1.214 13 C -0.109 4.109 14 C -0.166 4.166 15 C -0.010 4.010 16 N -0.339 5.339 17 C 0.301 3.699 18 O -0.428 6.428 19 C -0.175 4.175 20 C -0.106 4.106 21 H 0.108 0.892 22 C -0.159 4.159 23 C -0.174 4.174 24 C 0.305 3.695 25 O -0.446 6.446 26 N -0.367 5.367 27 C -0.017 4.017 28 C -0.019 4.019 29 C -0.161 4.161 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.216 0.784 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.234 0.766 47 H 0.116 0.884 48 H 0.081 0.919 49 H 0.089 0.911 50 H 0.101 0.899 51 H 0.081 0.919 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.834 0.725 -19.046 19.933 hybrid contribution -0.153 0.376 1.201 1.268 sum 5.681 1.101 -17.845 18.760 Atomic orbital electron populations 1.22500 0.99556 1.00756 0.99864 1.20212 0.91592 0.95303 0.86094 0.93773 1.42404 1.78108 1.10601 1.05284 1.19170 1.36315 0.93759 0.87417 0.91424 1.24700 1.02344 0.95949 0.97936 1.69635 1.51107 1.08581 1.28943 0.86314 0.77766 0.78623 0.83760 1.21370 1.21743 1.21351 1.21376 0.94951 0.99924 0.94656 1.22011 1.01189 0.99582 0.93827 1.21635 0.79116 1.00762 0.99533 1.48214 1.07318 1.60501 1.17860 1.20609 0.89346 0.77527 0.82379 1.90650 1.75490 1.45161 1.31507 1.21728 0.92234 1.04056 0.99515 1.21210 0.95320 0.95516 0.98601 0.89214 1.21772 0.94465 1.02930 0.96758 1.21624 1.02826 0.94123 0.98806 1.20216 0.79634 0.88448 0.81231 1.90755 1.56182 1.64967 1.32658 1.45481 1.30369 1.23200 1.37630 1.21668 0.97300 0.93193 0.89490 1.22032 0.98025 0.97401 0.84474 1.21969 0.96090 1.00876 0.97147 0.94307 0.93600 0.93034 0.78356 0.93522 0.91411 0.91717 0.90431 0.89361 0.91691 0.88046 0.88175 0.90066 0.90756 0.88041 0.88166 0.76579 0.88423 0.91914 0.91112 0.89946 0.91905 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.14 37.16 0.34 -2.46 16 2 C 0.18 3.17 2.47 -67.94 -0.17 3.01 16 3 H 0.04 0.83 8.08 -51.93 -0.42 0.41 16 4 N -0.72 -16.50 4.41 -53.43 -0.24 -16.74 16 5 C -0.24 -6.16 9.93 -15.06 -0.15 -6.31 16 6 H 0.07 1.75 7.83 -52.48 -0.41 1.33 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -26.80 13.06 55.49 0.72 -26.07 16 9 Si 0.90 21.63 29.55 -169.99 -5.02 16.61 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 C -0.09 -1.25 1.79 -90.58 -0.16 -1.41 16 14 C -0.13 -1.49 5.04 -26.61 -0.13 -1.62 16 15 C 0.11 1.21 6.43 -3.71 -0.02 1.19 16 16 N -0.61 -6.29 2.97 -172.50 -0.51 -6.80 16 17 C 0.51 5.27 7.46 -10.98 -0.08 5.19 16 18 O -0.55 -7.17 13.47 5.56 0.07 -7.10 16 19 C -0.14 -0.91 3.52 -27.88 -0.10 -1.01 16 20 C -0.09 -0.61 1.89 -90.48 -0.17 -0.78 16 21 H 0.09 0.74 7.93 -51.93 -0.41 0.33 16 22 C -0.12 -0.67 5.33 -26.51 -0.14 -0.81 16 23 C -0.13 -0.94 6.03 -28.09 -0.17 -1.11 16 24 C 0.52 5.46 7.71 -11.87 -0.09 5.36 16 25 O -0.57 -8.34 17.78 5.56 0.10 -8.24 16 26 N -0.72 -6.43 5.45 -61.39 -0.33 -6.76 16 27 C 0.11 0.86 6.12 -4.49 -0.03 0.83 16 28 C 0.10 1.01 6.37 -3.48 -0.02 0.99 16 29 C -0.12 -1.61 5.24 -26.38 -0.14 -1.75 16 30 H 0.04 0.54 6.40 -51.93 -0.33 0.20 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.38 9.28 7.58 -40.82 -0.31 8.97 16 34 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.86 6.36 -51.93 -0.33 0.53 16 38 H 0.09 1.01 7.00 -51.93 -0.36 0.65 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.52 7.93 -51.93 -0.41 0.11 16 41 H 0.10 0.58 7.67 -51.93 -0.40 0.18 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.40 8.13 -51.93 -0.42 -0.03 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.40 3.38 8.80 -40.82 -0.36 3.02 16 47 H 0.10 0.94 6.23 -51.93 -0.32 0.61 16 48 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 49 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.08 0.62 5.93 -51.93 -0.31 0.32 16 51 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 52 H 0.09 1.47 7.41 -51.93 -0.38 1.08 16 LS Contribution 399.07 15.07 6.01 6.01 Total: -1.00 -32.56 399.07 -9.50 -42.05 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -8.97 Total: 8.20 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -1.33 Total: -1.16 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -0.36 Total: -56.38 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: 0.17 Total: -15.34 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.56 -9.50 -42.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731998650.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.729 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds