Wall clock time and date at job start Tue Mar 31 2020 21:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47336 * 2 1 4 4 N 1.46496 * 109.47596 * 239.99707 * 2 1 3 5 5 C 1.36935 * 119.99899 * 85.00188 * 4 2 1 6 6 H 1.08000 * 120.00076 * 0.02562 * 5 4 2 7 7 C 1.38818 * 120.00188 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99652 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00073 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47169 * 89.99696 * 9 7 5 11 11 H 1.48505 * 109.46730 * 209.99673 * 9 7 5 12 12 H 1.48495 * 109.47079 * 329.99757 * 9 7 5 13 13 C 1.53004 * 109.46846 * 119.99548 * 2 1 3 14 14 C 1.53033 * 109.46289 * 300.00272 * 13 2 1 15 15 C 1.53190 * 109.31495 * 178.61333 * 14 13 2 16 16 N 1.46926 * 108.77582 * 54.63195 * 15 14 13 17 17 C 1.34780 * 120.62899 * 126.37446 * 16 15 14 18 18 O 1.21280 * 119.99901 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99645 * 180.02562 * 17 16 15 20 20 C 1.52999 * 109.46776 * 179.97438 * 19 17 16 21 21 H 1.09011 * 109.60086 * 305.31939 * 20 19 17 22 22 C 1.53345 * 109.60300 * 185.00072 * 20 19 17 23 23 C 1.53076 * 108.42724 * 172.71039 * 22 20 19 24 24 C 1.50181 * 109.88819 * 48.89612 * 23 22 20 25 25 O 1.21276 * 118.24118 * 162.41822 * 24 23 22 26 26 N 1.33348 * 123.50691 * 342.42517 * 24 23 22 27 27 C 1.45754 * 124.11454 * 2.21198 * 26 24 23 28 28 C 1.46924 * 118.73957 * 306.64623 * 16 15 14 29 29 C 1.52761 * 109.00923 * 53.30945 * 28 16 15 30 30 H 1.09002 * 109.46918 * 60.00177 * 1 2 3 31 31 H 1.08995 * 109.47134 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47477 * 300.00331 * 1 2 3 33 33 H 0.96999 * 119.99937 * 265.00603 * 4 2 1 34 34 H 0.97005 * 119.99512 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.44695 * 59.97154 * 13 2 1 36 36 H 1.09002 * 109.49871 * 58.65832 * 14 13 2 37 37 H 1.08996 * 109.49820 * 298.56499 * 14 13 2 38 38 H 1.09010 * 109.58565 * 294.85035 * 15 14 13 39 39 H 1.09000 * 109.59008 * 174.42356 * 15 14 13 40 40 H 1.08999 * 109.46995 * 60.00070 * 19 17 16 41 41 H 1.08991 * 109.47240 * 299.99312 * 19 17 16 42 42 H 1.09000 * 109.67410 * 52.97795 * 22 20 19 43 43 H 1.08994 * 109.70393 * 292.46118 * 22 20 19 44 44 H 1.08992 * 109.39915 * 169.03068 * 23 22 20 45 45 H 1.09004 * 109.39849 * 288.77287 * 23 22 20 46 46 H 0.97010 * 117.94119 * 182.22487 * 26 24 23 47 47 H 1.08996 * 109.30278 * 220.62192 * 27 26 24 48 48 H 1.08998 * 109.12855 * 101.13302 * 27 26 24 49 49 H 1.09001 * 109.58678 * 173.14231 * 28 16 15 50 50 H 1.09001 * 109.59078 * 293.56739 * 28 16 15 51 51 H 1.09000 * 109.56570 * 185.55370 * 29 28 16 52 52 H 1.08999 * 109.36454 * 65.49686 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3756 6 1 1.8928 1.0404 -2.4241 7 6 2.6116 -0.6620 -3.5092 8 7 2.9246 -1.9391 -3.4500 9 14 2.7907 0.2700 -5.1181 10 1 4.1534 0.8542 -5.2027 11 1 2.5798 -0.6611 -6.2556 12 1 1.7815 1.3578 -5.1750 13 6 2.0399 -0.7212 1.2494 14 6 1.5296 0.0004 2.4987 15 6 2.0132 -0.7442 3.7470 16 7 3.4750 -0.8771 3.6817 17 6 4.2489 -0.4577 4.7023 18 8 3.7399 0.0353 5.6865 19 6 5.7469 -0.6004 4.6200 20 6 6.3825 -0.0510 5.8987 21 1 6.0486 0.9738 6.0619 22 6 7.9101 -0.0795 5.7672 23 6 8.5133 0.6400 6.9762 24 6 7.8904 0.1233 8.2413 25 8 8.4611 0.3354 9.2902 26 7 6.7435 -0.5562 8.2730 27 6 5.9771 -0.9220 7.0884 28 6 4.0774 -1.4703 2.4801 29 6 3.5703 -0.7226 1.2483 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.2490 -1.6318 -1.1525 34 1 3.2480 -2.3964 -4.2420 35 1 1.6759 -1.7486 1.2493 36 1 0.4398 0.0216 2.4870 37 1 1.9135 1.0205 2.5119 38 1 1.5576 -1.7339 3.7816 39 1 1.7370 -0.1810 4.6384 40 1 6.1184 -0.0418 3.7610 41 1 6.0060 -1.6532 4.5085 42 1 8.2091 0.4292 4.8507 43 1 8.2577 -1.1122 5.7438 44 1 9.5884 0.4631 7.0034 45 1 8.3257 1.7104 6.8912 46 1 6.3974 -0.8237 9.1389 47 1 4.9148 -0.7847 7.2900 48 1 6.1662 -1.9685 6.8497 49 1 5.1628 -1.3861 2.5358 50 1 3.7936 -2.5203 2.4093 51 1 3.9331 -1.2161 0.3467 52 1 3.9350 0.3043 1.2733 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731998654.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:15 Heat of formation + Delta-G solvation = -82.910502 kcal Electronic energy + Delta-G solvation = -29937.269141 eV Core-core repulsion = 25935.741753 eV Total energy + Delta-G solvation = -4001.527387 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.87535 -40.08677 -38.22551 -36.86396 -35.46900 -33.77374 -33.00615 -31.94757 -30.94805 -30.78041 -28.44815 -27.17279 -25.34298 -24.78429 -23.76298 -22.92045 -22.28100 -21.07725 -19.76794 -19.44858 -18.95924 -17.55706 -17.36811 -16.96049 -16.40441 -16.16748 -15.60803 -15.52250 -15.01463 -14.63812 -14.44277 -14.10146 -13.95026 -13.90391 -13.75955 -13.69051 -13.49780 -13.16629 -12.84620 -12.61038 -12.49022 -12.27330 -12.11467 -11.91926 -11.66336 -11.58484 -11.35533 -11.25686 -11.20865 -11.02918 -10.89946 -10.77055 -10.32994 -10.30677 -10.22449 -10.03871 -9.89630 -9.75302 -9.62490 -9.31630 -8.95372 -8.66199 -6.99535 -5.81624 -3.09395 2.38752 2.47028 2.86958 3.02922 3.39058 3.45288 3.46222 4.11398 4.18566 4.25472 4.38962 4.53922 4.56724 4.80328 4.90721 4.96342 4.99130 5.01923 5.07384 5.15667 5.17836 5.25431 5.31256 5.35120 5.42783 5.44606 5.49221 5.49978 5.62142 5.67467 5.73496 5.86900 5.87117 5.89185 5.96458 6.06470 6.15646 6.26429 6.36660 6.42459 6.48246 6.49482 6.60758 6.73005 6.89626 7.06081 7.08313 7.31091 7.66323 7.94297 8.02946 8.37519 9.48853 10.06693 10.41507 11.40996 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018595 B = 0.002166 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.445951 B =12921.004745 C =13944.293162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.178 3.822 3 H 0.044 0.956 4 N -0.723 5.723 5 C -0.234 4.234 6 H 0.068 0.932 7 C -0.014 4.014 8 N -0.934 5.934 9 Si 0.904 3.096 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.089 4.089 14 C -0.128 4.128 15 C 0.112 3.888 16 N -0.606 5.606 17 C 0.513 3.487 18 O -0.549 6.549 19 C -0.135 4.135 20 C -0.088 4.088 21 H 0.090 0.910 22 C -0.121 4.121 23 C -0.134 4.134 24 C 0.518 3.482 25 O -0.566 6.566 26 N -0.716 5.716 27 C 0.109 3.891 28 C 0.104 3.896 29 C -0.124 4.124 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.038 0.962 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.399 0.601 47 H 0.097 0.903 48 H 0.061 0.939 49 H 0.082 0.918 50 H 0.070 0.930 51 H 0.093 0.907 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.672 0.133 18.443 19.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.068 3.932 3 H 0.062 0.938 4 N -0.364 5.364 5 C -0.366 4.366 6 H 0.086 0.914 7 C -0.210 4.210 8 N -0.582 5.582 9 Si 0.735 3.265 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.209 1.209 13 C -0.109 4.109 14 C -0.167 4.167 15 C -0.011 4.011 16 N -0.339 5.339 17 C 0.302 3.698 18 O -0.428 6.428 19 C -0.175 4.175 20 C -0.107 4.107 21 H 0.109 0.891 22 C -0.159 4.159 23 C -0.174 4.174 24 C 0.305 3.695 25 O -0.445 6.445 26 N -0.367 5.367 27 C -0.015 4.015 28 C -0.019 4.019 29 C -0.162 4.162 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.216 0.784 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.107 0.893 40 H 0.122 0.878 41 H 0.116 0.884 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.234 0.766 47 H 0.115 0.885 48 H 0.079 0.921 49 H 0.100 0.900 50 H 0.088 0.912 51 H 0.112 0.888 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.791 0.681 19.110 19.980 hybrid contribution -0.168 -0.056 -1.005 1.020 sum 5.624 0.625 18.105 18.969 Atomic orbital electron populations 1.22495 0.99545 1.00754 0.99872 1.20214 0.91601 0.95309 0.86090 0.93764 1.42408 1.78091 1.10595 1.05300 1.19218 1.36190 0.93772 0.87392 0.91361 1.24708 1.02387 0.95952 0.97954 1.69652 1.51143 1.08590 1.28859 0.86235 0.77757 0.78621 0.83855 1.21792 1.21845 1.20867 1.21374 0.94925 0.99920 0.94666 1.22012 1.01206 0.99607 0.93840 1.21639 0.79119 1.00741 0.99552 1.48212 1.07294 1.60724 1.17645 1.20606 0.89341 0.77437 0.82457 1.90650 1.75506 1.45050 1.31590 1.21730 0.92253 1.04011 0.99531 1.21217 0.94861 1.01317 0.93319 0.89136 1.21770 0.94198 1.01689 0.98258 1.21629 1.01807 1.02180 0.91801 1.20227 0.80443 0.77358 0.91462 1.90755 1.61336 1.58299 1.34133 1.45480 1.23614 1.56915 1.10732 1.21654 0.97344 0.97847 0.84690 1.21843 0.98009 0.97570 0.84440 1.21825 0.96145 1.01014 0.97218 0.93029 0.93598 0.94305 0.78360 0.93586 0.91407 0.90419 0.91724 0.91658 0.89344 0.87835 0.88390 0.89971 0.90839 0.88028 0.88094 0.76623 0.88455 0.92053 0.89965 0.91155 0.88837 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.14 37.15 0.34 -2.46 16 2 C 0.18 3.18 2.47 -67.93 -0.17 3.01 16 3 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 4 N -0.72 -16.51 4.41 -53.43 -0.24 -16.75 16 5 C -0.23 -6.14 9.93 -15.06 -0.15 -6.28 16 6 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -26.80 13.06 55.49 0.72 -26.07 16 9 Si 0.90 21.64 29.55 -169.99 -5.02 16.61 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 13 C -0.09 -1.25 1.79 -90.58 -0.16 -1.41 16 14 C -0.13 -1.51 5.04 -26.62 -0.13 -1.64 16 15 C 0.11 1.21 6.43 -3.71 -0.02 1.18 16 16 N -0.61 -6.29 2.98 -173.03 -0.52 -6.81 16 17 C 0.51 5.27 7.46 -10.98 -0.08 5.19 16 18 O -0.55 -7.17 13.47 5.56 0.07 -7.09 16 19 C -0.13 -0.91 3.52 -27.88 -0.10 -1.01 16 20 C -0.09 -0.61 1.89 -90.48 -0.17 -0.78 16 21 H 0.09 0.78 7.93 -51.92 -0.41 0.36 16 22 C -0.12 -0.67 5.33 -26.51 -0.14 -0.81 16 23 C -0.13 -0.96 6.03 -28.09 -0.17 -1.13 16 24 C 0.52 5.37 7.71 -11.87 -0.09 5.28 16 25 O -0.57 -8.24 17.78 5.56 0.10 -8.14 16 26 N -0.72 -6.17 5.45 -61.39 -0.33 -6.50 16 27 C 0.11 0.81 6.12 -4.49 -0.03 0.79 16 28 C 0.10 1.02 6.31 -3.93 -0.02 0.99 16 29 C -0.12 -1.63 5.21 -26.83 -0.14 -1.77 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.04 0.54 6.40 -51.93 -0.33 0.21 16 33 H 0.38 9.28 7.58 -40.82 -0.31 8.97 16 34 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.08 0.87 6.36 -51.93 -0.33 0.54 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 39 H 0.09 1.02 7.00 -51.93 -0.36 0.65 16 40 H 0.10 0.61 7.68 -51.93 -0.40 0.21 16 41 H 0.10 0.50 7.92 -51.93 -0.41 0.09 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.37 8.13 -51.93 -0.42 -0.05 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.40 3.19 8.80 -40.82 -0.36 2.83 16 47 H 0.10 0.88 6.23 -51.93 -0.32 0.56 16 48 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 49 H 0.08 0.63 5.93 -51.93 -0.31 0.32 16 50 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 51 H 0.09 1.49 7.40 -51.93 -0.38 1.10 16 52 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 399.00 15.07 6.01 6.01 Total: -1.00 -32.59 399.00 -9.51 -42.09 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -8.97 Total: 7.98 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -1.34 Total: -1.34 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.36 Total: -56.13 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.17 Total: -15.23 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.59 -9.51 -42.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731998654.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.817 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds