Wall clock time and date at job start Tue Mar 31 2020 21:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47336 * 2 1 4 4 N 1.46496 * 109.47596 * 239.99707 * 2 1 3 5 5 C 1.36935 * 119.99899 * 85.00188 * 4 2 1 6 6 H 1.08000 * 120.00076 * 0.02562 * 5 4 2 7 7 C 1.38818 * 120.00188 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99652 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00073 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47169 * 89.99696 * 9 7 5 11 11 H 1.48505 * 109.46730 * 209.99673 * 9 7 5 12 12 H 1.48495 * 109.47079 * 329.99757 * 9 7 5 13 13 C 1.53004 * 109.46846 * 119.99548 * 2 1 3 14 14 C 1.53033 * 109.46289 * 300.00272 * 13 2 1 15 15 C 1.53190 * 109.31495 * 178.61333 * 14 13 2 16 16 N 1.46926 * 108.77582 * 54.63195 * 15 14 13 17 17 C 1.34780 * 120.62899 * 126.37446 * 16 15 14 18 18 O 1.21280 * 119.99901 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99645 * 180.02562 * 17 16 15 20 20 C 1.52999 * 109.46776 * 179.97438 * 19 17 16 21 21 H 1.09011 * 109.60086 * 305.31939 * 20 19 17 22 22 C 1.53345 * 109.60300 * 185.00072 * 20 19 17 23 23 C 1.53076 * 108.42724 * 172.71039 * 22 20 19 24 24 C 1.50181 * 109.88819 * 48.89612 * 23 22 20 25 25 O 1.21276 * 118.24118 * 162.41822 * 24 23 22 26 26 N 1.33348 * 123.50691 * 342.42517 * 24 23 22 27 27 C 1.45754 * 124.11454 * 2.21198 * 26 24 23 28 28 C 1.46924 * 118.73957 * 306.64623 * 16 15 14 29 29 C 1.52761 * 109.00923 * 53.30945 * 28 16 15 30 30 H 1.09002 * 109.46918 * 60.00177 * 1 2 3 31 31 H 1.08995 * 109.47134 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47477 * 300.00331 * 1 2 3 33 33 H 0.96999 * 119.99937 * 265.00603 * 4 2 1 34 34 H 0.97005 * 119.99512 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.44695 * 59.97154 * 13 2 1 36 36 H 1.09002 * 109.49871 * 58.65832 * 14 13 2 37 37 H 1.08996 * 109.49820 * 298.56499 * 14 13 2 38 38 H 1.09010 * 109.58565 * 294.85035 * 15 14 13 39 39 H 1.09000 * 109.59008 * 174.42356 * 15 14 13 40 40 H 1.08999 * 109.46995 * 60.00070 * 19 17 16 41 41 H 1.08991 * 109.47240 * 299.99312 * 19 17 16 42 42 H 1.09000 * 109.67410 * 52.97795 * 22 20 19 43 43 H 1.08994 * 109.70393 * 292.46118 * 22 20 19 44 44 H 1.08992 * 109.39915 * 169.03068 * 23 22 20 45 45 H 1.09004 * 109.39849 * 288.77287 * 23 22 20 46 46 H 0.97010 * 117.94119 * 182.22487 * 26 24 23 47 47 H 1.08996 * 109.30278 * 220.62192 * 27 26 24 48 48 H 1.08998 * 109.12855 * 101.13302 * 27 26 24 49 49 H 1.09001 * 109.58678 * 173.14231 * 28 16 15 50 50 H 1.09001 * 109.59078 * 293.56739 * 28 16 15 51 51 H 1.09000 * 109.56570 * 185.55370 * 29 28 16 52 52 H 1.08999 * 109.36454 * 65.49686 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3756 6 1 1.8928 1.0404 -2.4241 7 6 2.6116 -0.6620 -3.5092 8 7 2.9246 -1.9391 -3.4500 9 14 2.7907 0.2700 -5.1181 10 1 4.1534 0.8542 -5.2027 11 1 2.5798 -0.6611 -6.2556 12 1 1.7815 1.3578 -5.1750 13 6 2.0399 -0.7212 1.2494 14 6 1.5296 0.0004 2.4987 15 6 2.0132 -0.7442 3.7470 16 7 3.4750 -0.8771 3.6817 17 6 4.2489 -0.4577 4.7023 18 8 3.7399 0.0353 5.6865 19 6 5.7469 -0.6004 4.6200 20 6 6.3825 -0.0510 5.8987 21 1 6.0486 0.9738 6.0619 22 6 7.9101 -0.0795 5.7672 23 6 8.5133 0.6400 6.9762 24 6 7.8904 0.1233 8.2413 25 8 8.4611 0.3354 9.2902 26 7 6.7435 -0.5562 8.2730 27 6 5.9771 -0.9220 7.0884 28 6 4.0774 -1.4703 2.4801 29 6 3.5703 -0.7226 1.2483 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.2490 -1.6318 -1.1525 34 1 3.2480 -2.3964 -4.2420 35 1 1.6759 -1.7486 1.2493 36 1 0.4398 0.0216 2.4870 37 1 1.9135 1.0205 2.5119 38 1 1.5576 -1.7339 3.7816 39 1 1.7370 -0.1810 4.6384 40 1 6.1184 -0.0418 3.7610 41 1 6.0060 -1.6532 4.5085 42 1 8.2091 0.4292 4.8507 43 1 8.2577 -1.1122 5.7438 44 1 9.5884 0.4631 7.0034 45 1 8.3257 1.7104 6.8912 46 1 6.3974 -0.8237 9.1389 47 1 4.9148 -0.7847 7.2900 48 1 6.1662 -1.9685 6.8497 49 1 5.1628 -1.3861 2.5358 50 1 3.7936 -2.5203 2.4093 51 1 3.9331 -1.2161 0.3467 52 1 3.9350 0.3043 1.2733 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731998654.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:14 Heat of formation + Delta-G solvation = -104.497487 kcal Electronic energy + Delta-G solvation = -29938.205223 eV Core-core repulsion = 25935.741753 eV Total energy + Delta-G solvation = -4002.463469 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.61878 -40.92511 -39.27834 -37.69321 -36.76565 -34.66000 -34.35058 -32.83423 -32.13232 -31.80907 -29.99436 -27.93776 -26.52664 -25.60076 -25.13507 -23.91498 -23.05236 -22.16362 -21.06168 -20.13028 -19.79456 -19.07073 -18.22718 -17.99761 -17.16240 -16.93383 -16.72015 -16.34251 -16.28732 -15.68528 -15.47591 -15.34195 -15.10473 -14.93528 -14.72307 -14.44782 -14.29125 -14.18253 -14.04549 -13.74254 -13.52285 -13.38633 -13.04683 -12.94881 -12.83142 -12.72283 -12.50362 -12.29185 -12.22013 -12.15359 -12.01600 -11.90138 -11.78637 -11.74748 -11.44137 -11.28124 -11.14569 -10.88191 -10.81458 -10.58221 -10.06003 -9.54355 -8.92013 -7.89119 -5.14676 1.49293 1.49942 1.57578 1.60812 1.70733 2.09900 2.36131 2.59575 3.44630 3.49374 3.57962 3.72658 3.81150 3.83225 3.89086 3.93520 4.03797 4.23480 4.30070 4.40427 4.41766 4.47288 4.52281 4.55424 4.59030 4.65276 4.67364 4.78023 4.81165 4.84654 4.90065 4.92599 4.96081 4.99004 5.00265 5.10366 5.14411 5.17693 5.19383 5.29865 5.37665 5.43798 5.52222 5.56690 5.68067 5.73536 5.78672 6.34214 6.34910 6.52019 7.18469 7.25177 7.40965 8.19083 8.42442 9.33909 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018595 B = 0.002166 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.445951 B =12921.004745 C =13944.293162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.172 3.828 3 H 0.033 0.967 4 N -0.730 5.730 5 C -0.230 4.230 6 H 0.068 0.932 7 C -0.073 4.073 8 N -0.965 5.965 9 Si 0.962 3.038 10 H -0.288 1.288 11 H -0.299 1.299 12 H -0.276 1.276 13 C -0.080 4.080 14 C -0.118 4.118 15 C 0.114 3.886 16 N -0.608 5.608 17 C 0.509 3.491 18 O -0.581 6.581 19 C -0.129 4.129 20 C -0.085 4.085 21 H 0.071 0.929 22 C -0.112 4.112 23 C -0.132 4.132 24 C 0.510 3.490 25 O -0.617 6.617 26 N -0.712 5.712 27 C 0.110 3.890 28 C 0.112 3.888 29 C -0.119 4.119 30 H 0.028 0.972 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.374 0.626 34 H 0.249 0.751 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.110 0.890 45 H 0.107 0.893 46 H 0.399 0.601 47 H 0.081 0.919 48 H 0.081 0.919 49 H 0.112 0.888 50 H 0.079 0.921 51 H 0.064 0.936 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.231 0.032 18.598 19.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.064 3.936 3 H 0.051 0.949 4 N -0.370 5.370 5 C -0.362 4.362 6 H 0.086 0.914 7 C -0.265 4.265 8 N -0.617 5.617 9 Si 0.792 3.208 10 H -0.215 1.215 11 H -0.225 1.225 12 H -0.201 1.201 13 C -0.099 4.099 14 C -0.156 4.156 15 C -0.009 4.009 16 N -0.340 5.340 17 C 0.299 3.701 18 O -0.461 6.461 19 C -0.169 4.169 20 C -0.104 4.104 21 H 0.090 0.910 22 C -0.149 4.149 23 C -0.172 4.172 24 C 0.299 3.701 25 O -0.500 6.500 26 N -0.361 5.361 27 C -0.014 4.014 28 C -0.010 4.010 29 C -0.157 4.157 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.206 0.794 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.121 0.879 43 H 0.104 0.896 44 H 0.128 0.872 45 H 0.125 0.875 46 H 0.233 0.767 47 H 0.099 0.901 48 H 0.099 0.901 49 H 0.130 0.870 50 H 0.097 0.903 51 H 0.083 0.917 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.310 0.600 19.269 20.284 hybrid contribution -0.444 0.024 -0.983 1.079 sum 5.867 0.623 18.285 19.214 Atomic orbital electron populations 1.22372 0.98365 1.00744 1.00366 1.20443 0.92300 0.94751 0.86127 0.94881 1.42545 1.78237 1.10250 1.05970 1.19515 1.34286 0.93831 0.88554 0.91430 1.25381 1.03503 0.96810 1.00853 1.69784 1.52897 1.09840 1.29149 0.85307 0.77744 0.77459 0.80273 1.21515 1.22549 1.20104 1.21245 0.95623 0.99470 0.93592 1.21906 1.01685 0.98933 0.93082 1.21570 0.79827 1.01039 0.98427 1.48273 1.07123 1.60755 1.17873 1.21237 0.90744 0.76405 0.81696 1.90649 1.76385 1.46323 1.32788 1.21785 0.89321 1.05951 0.99826 1.21166 0.96011 1.00089 0.93150 0.91025 1.21748 0.92599 1.02489 0.98110 1.21671 1.02162 1.02555 0.90779 1.20869 0.80428 0.76803 0.91970 1.90727 1.62834 1.60381 1.36103 1.45550 1.23159 1.55967 1.11379 1.21715 0.96155 0.99075 0.84437 1.21815 0.99585 0.97192 0.82405 1.21704 0.95445 1.00715 0.97873 0.95322 0.93817 0.91000 0.79363 0.94227 0.91489 0.89517 0.92467 0.90554 0.89962 0.86123 0.85726 0.87939 0.89592 0.87166 0.87535 0.76657 0.90082 0.90132 0.87020 0.90290 0.91746 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.17 9.14 71.98 0.66 -4.52 16 2 C 0.17 6.07 2.47 44.99 0.11 6.18 16 3 H 0.03 1.24 8.08 -2.39 -0.02 1.23 16 4 N -0.73 -33.54 4.41 -322.95 -1.42 -34.96 16 5 C -0.23 -12.06 9.93 84.04 0.83 -11.23 16 6 H 0.07 3.50 7.83 -2.91 -0.02 3.47 16 7 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 8 N -0.97 -56.09 13.06 21.65 0.28 -55.81 16 9 Si 0.96 44.67 29.55 68.60 2.03 46.70 16 10 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 13 C -0.08 -2.13 1.79 -10.77 -0.02 -2.15 16 14 C -0.12 -2.54 5.04 30.67 0.15 -2.39 16 15 C 0.11 2.22 6.43 86.36 0.56 2.78 16 16 N -0.61 -11.05 2.98 -819.72 -2.44 -13.49 16 17 C 0.51 9.19 7.46 87.66 0.65 9.84 16 18 O -0.58 -14.38 13.47 -3.03 -0.04 -14.43 16 19 C -0.13 -1.27 3.52 29.85 0.11 -1.16 16 20 C -0.08 -0.96 1.89 -10.71 -0.02 -0.98 16 21 H 0.07 1.12 7.93 -2.38 -0.02 1.10 16 22 C -0.11 -0.86 5.33 30.74 0.16 -0.70 16 23 C -0.13 -1.64 6.03 29.71 0.18 -1.46 16 24 C 0.51 10.31 7.71 87.72 0.68 10.98 16 25 O -0.62 -18.28 17.78 -3.02 -0.05 -18.33 16 26 N -0.71 -11.74 5.45 -467.34 -2.55 -14.28 16 27 C 0.11 1.45 6.12 86.49 0.53 1.98 16 28 C 0.11 1.88 6.31 86.22 0.54 2.42 16 29 C -0.12 -2.98 5.21 30.53 0.16 -2.83 16 30 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.85 6.40 -2.39 -0.02 1.83 16 33 H 0.37 18.38 7.58 -92.71 -0.70 17.68 16 34 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.09 1.72 6.36 -2.39 -0.02 1.70 16 37 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.08 1.76 7.00 -2.39 -0.02 1.74 16 40 H 0.12 0.87 7.68 -2.39 -0.02 0.85 16 41 H 0.12 0.63 7.92 -2.39 -0.02 0.61 16 42 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.09 0.51 8.13 -2.39 -0.02 0.49 16 44 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 46 H 0.40 6.37 8.80 -92.70 -0.82 5.55 16 47 H 0.08 1.39 6.23 -2.39 -0.01 1.38 16 48 H 0.08 0.78 8.09 -2.39 -0.02 0.76 16 49 H 0.11 1.23 5.93 -2.39 -0.01 1.22 16 50 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 51 H 0.06 2.03 7.40 -2.39 -0.02 2.01 16 52 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -72.43 399.00 0.96 -71.46 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: -0.59 Total: 29.91 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 5.75 Total: 3.23 kcal Atomic # 7 Polarization: -112.42 SS G_CDS: -6.13 Total: -118.55 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -0.09 Total: -32.76 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -72.43 0.96 -71.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731998654.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.033 kcal (2) G-P(sol) polarization free energy of solvation -72.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds