Wall clock time and date at job start Tue Mar 31 2020 20:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47268 * 2 1 4 4 C 1.50697 * 109.47057 * 240.00005 * 2 1 3 5 5 O 1.21289 * 120.00538 * 258.38160 * 4 2 1 6 6 N 1.34780 * 120.00305 * 78.38106 * 4 2 1 7 7 C 1.47422 * 125.64577 * 3.80812 * 6 4 2 8 8 C 1.54905 * 104.83700 * 204.09296 * 7 6 4 9 9 C 1.55156 * 101.57854 * 322.99367 * 8 7 6 10 10 C 1.47020 * 125.65028 * 183.50383 * 6 4 2 11 11 H 1.09001 * 109.88289 * 59.55855 * 10 6 4 12 12 C 1.53002 * 109.88214 * 298.39192 * 10 6 4 13 13 N 1.46901 * 109.47149 * 173.88243 * 12 10 6 14 14 C 1.46896 * 111.00145 * 174.34311 * 13 12 10 15 15 C 1.50696 * 109.47361 * 180.02562 * 14 13 12 16 16 O 1.21300 * 120.00077 * 359.97438 * 15 14 13 17 17 N 1.34772 * 120.00374 * 179.97438 * 15 14 13 18 18 C 1.37097 * 120.00482 * 179.97438 * 17 15 14 19 19 H 1.08002 * 119.99383 * 0.02562 * 18 17 15 20 20 C 1.38946 * 120.00182 * 180.02562 * 18 17 15 21 21 N 1.31413 * 120.00299 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99973 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47205 * 59.99806 * 22 20 18 24 24 H 1.48499 * 109.47106 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46900 * 299.99762 * 22 20 18 26 26 C 1.53000 * 109.47031 * 120.00284 * 2 1 3 27 27 C 1.53781 * 113.61199 * 200.85955 * 26 2 1 28 28 C 1.54059 * 86.98203 * 140.01795 * 27 26 2 29 29 C 1.53777 * 113.61203 * 298.46929 * 26 2 1 30 30 H 1.08994 * 109.47146 * 185.41642 * 1 2 3 31 31 H 1.08998 * 109.47021 * 305.42034 * 1 2 3 32 32 H 1.09004 * 109.47024 * 65.41828 * 1 2 3 33 33 H 1.09000 * 110.37094 * 322.93433 * 7 6 4 34 34 H 1.09007 * 110.36778 * 85.25514 * 7 6 4 35 35 H 1.08996 * 111.00317 * 81.06242 * 8 7 6 36 36 H 1.08991 * 111.00746 * 204.92040 * 8 7 6 37 37 H 1.09000 * 110.72131 * 153.86211 * 9 8 7 38 38 H 1.09008 * 110.72206 * 276.95768 * 9 8 7 39 39 H 1.09003 * 109.47158 * 293.88505 * 12 10 6 40 40 H 1.08997 * 109.47005 * 53.88666 * 12 10 6 41 41 H 1.00904 * 110.99644 * 298.29986 * 13 12 10 42 42 H 1.09007 * 109.46784 * 299.99813 * 14 13 12 43 43 H 1.09001 * 109.47093 * 59.99739 * 14 13 12 44 44 H 0.97002 * 119.99576 * 359.97438 * 17 15 14 45 45 H 0.96998 * 120.00019 * 180.02562 * 21 20 18 46 46 H 1.09004 * 112.85272 * 69.66587 * 26 2 1 47 47 H 1.08992 * 113.61746 * 254.61044 * 27 26 2 48 48 H 1.08995 * 113.61740 * 25.51971 * 27 26 2 49 49 H 1.08996 * 113.62018 * 220.02134 * 28 27 26 50 50 H 1.09001 * 113.68712 * 89.12472 * 28 27 26 51 51 H 1.09001 * 113.61526 * 334.48393 * 29 26 2 52 52 H 1.09000 * 113.61723 * 105.30520 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.4339 -1.8520 -1.1502 6 7 2.0353 -0.0772 -2.4202 7 6 1.6522 1.3283 -2.6464 8 6 1.2288 1.3893 -4.1352 9 6 2.2437 0.4139 -4.7878 10 6 2.4273 -0.6718 -3.7064 11 1 1.7886 -1.5265 -3.9296 12 6 3.8913 -1.1128 -3.6512 13 7 4.2318 -1.8357 -4.8839 14 6 5.6643 -2.1582 -4.9265 15 6 5.9752 -2.8970 -6.2026 16 8 5.0903 -3.1322 -6.9982 17 7 7.2364 -3.2964 -6.4599 18 6 7.5192 -3.9690 -7.6206 19 1 6.7312 -4.1784 -8.3289 20 6 8.8194 -4.3812 -7.8856 21 7 9.7780 -4.1269 -7.0234 22 14 9.2047 -5.2970 -9.4675 23 1 8.8546 -4.4438 -10.6313 24 1 10.6527 -5.6236 -9.5102 25 1 8.4130 -6.5524 -9.5180 26 6 2.0400 -0.7213 1.2492 27 6 3.4867 -0.3577 1.6229 28 6 3.0226 -0.3640 3.0919 29 6 1.6120 -0.0510 2.5654 30 1 -0.3633 -1.0230 0.0970 31 1 -0.3633 0.5956 0.8375 32 1 -0.3633 0.4275 -0.9346 33 1 0.8162 1.6020 -2.0028 34 1 2.5020 1.9869 -2.4664 35 1 0.2066 1.0343 -4.2656 36 1 1.3444 2.3973 -4.5333 37 1 1.8333 -0.0148 -5.7022 38 1 3.1883 0.9187 -4.9904 39 1 4.5316 -0.2359 -3.5555 40 1 4.0413 -1.7677 -2.7929 41 1 3.6705 -2.6685 -4.9815 42 1 6.2454 -1.2366 -4.8898 43 1 5.9213 -2.7841 -4.0719 44 1 7.9441 -3.1080 -5.8238 45 1 10.6857 -4.4143 -7.2087 46 1 1.8520 -1.7947 1.2246 47 1 4.2082 -1.1403 1.3882 48 1 3.7959 0.6250 1.2670 49 1 3.4537 0.4391 3.6896 50 1 3.1028 -1.3391 3.5724 51 1 1.4096 1.0155 2.4665 52 1 0.8201 -0.5853 3.0902 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733343088.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:25 Heat of formation + Delta-G solvation = -59.957654 kcal Electronic energy + Delta-G solvation = -29594.610961 eV Core-core repulsion = 25594.078884 eV Total energy + Delta-G solvation = -4000.532077 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.76435 -39.13894 -38.18716 -37.38636 -35.22942 -33.81559 -33.36213 -31.44414 -31.19831 -30.10476 -26.78227 -26.56081 -25.55539 -24.94984 -24.13711 -22.85166 -22.17614 -20.90318 -19.71190 -19.34345 -18.85730 -17.83859 -17.27380 -16.83722 -16.06870 -15.57238 -15.39837 -15.27595 -14.91855 -14.83962 -14.48138 -14.24099 -13.83498 -13.72395 -13.46360 -13.39541 -13.29783 -12.90180 -12.83239 -12.69612 -12.56628 -12.25672 -12.17078 -11.93826 -11.66245 -11.57378 -11.52246 -11.45287 -11.33282 -11.02890 -10.84384 -10.82523 -10.81845 -10.58995 -10.42954 -10.41373 -10.17692 -9.74760 -9.45980 -8.83582 -8.37689 -7.97497 -7.90734 -6.37573 -3.78378 2.50606 2.74563 3.23059 3.28199 3.32892 3.96156 4.04443 4.17360 4.26254 4.33338 4.33628 4.46062 4.51191 4.57002 4.66878 4.77153 4.83824 4.99146 5.00401 5.06081 5.13908 5.20529 5.26067 5.29559 5.34625 5.38545 5.40989 5.44272 5.47790 5.57655 5.60723 5.63220 5.66304 5.74758 5.82588 5.84850 5.86734 5.89764 5.98373 5.99239 6.06573 6.20011 6.23991 6.28335 6.36087 7.24601 7.39544 7.58762 7.72009 8.06174 8.10450 8.65871 9.21834 9.58924 10.10641 10.80225 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016216 B = 0.002120 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.287158 B =13205.005440 C =14464.504539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 H 0.090 0.910 4 C 0.532 3.468 5 O -0.532 6.532 6 N -0.616 5.616 7 C 0.097 3.903 8 C -0.137 4.137 9 C -0.113 4.113 10 C 0.142 3.858 11 H 0.075 0.925 12 C 0.049 3.951 13 N -0.664 5.664 14 C 0.053 3.947 15 C 0.443 3.557 16 O -0.583 6.583 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.102 0.898 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 C -0.092 4.092 27 C -0.138 4.138 28 C -0.142 4.142 29 C -0.135 4.135 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.044 0.956 41 H 0.349 0.651 42 H 0.084 0.916 43 H 0.043 0.957 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.101 0.899 47 H 0.069 0.931 48 H 0.077 0.923 49 H 0.066 0.934 50 H 0.080 0.920 51 H 0.080 0.920 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.581 15.155 18.781 29.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 H 0.108 0.892 4 C 0.321 3.679 5 O -0.408 6.408 6 N -0.350 5.350 7 C -0.026 4.026 8 C -0.175 4.175 9 C -0.151 4.151 10 C 0.038 3.962 11 H 0.093 0.907 12 C -0.081 4.081 13 N -0.297 5.297 14 C -0.080 4.080 15 C 0.228 3.772 16 O -0.468 6.468 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.111 4.111 27 C -0.175 4.175 28 C -0.179 4.179 29 C -0.172 4.172 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.168 0.832 42 H 0.102 0.898 43 H 0.061 0.939 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.119 0.881 47 H 0.088 0.912 48 H 0.096 0.904 49 H 0.085 0.915 50 H 0.098 0.902 51 H 0.098 0.902 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.678 14.848 17.983 29.264 hybrid contribution 0.910 -0.958 0.244 1.344 sum -16.768 13.890 18.228 28.396 Atomic orbital electron populations 1.21719 0.92675 1.03037 1.02380 1.21308 0.97560 1.00167 0.92718 0.89210 1.20352 0.77854 0.86495 0.83209 1.90710 1.46805 1.18199 1.85089 1.48618 1.66520 1.12712 1.07197 1.22390 0.99856 0.82760 0.97565 1.22830 0.99931 1.00772 0.93965 1.22584 0.99831 0.95217 0.97493 1.21496 0.95614 0.96782 0.82257 0.90697 1.22265 0.95006 0.98879 0.91973 1.60004 1.04482 1.29778 1.35437 1.21638 0.89771 0.99844 0.96743 1.19804 0.83807 0.84906 0.88672 1.90515 1.46196 1.60478 1.49562 1.41857 1.07473 1.50282 1.20504 1.19654 0.94545 1.31261 0.97381 0.87982 1.25264 0.95273 0.98212 0.99267 1.69609 1.01583 1.47203 1.36018 0.85912 0.77085 0.79769 0.81407 1.19895 1.21007 1.19932 1.22440 0.96262 1.00669 0.91713 1.22992 0.96676 1.01798 0.96036 1.22835 0.96681 1.01904 0.96526 1.22941 0.97194 1.00698 0.96362 0.91884 0.91311 0.92152 0.90554 0.91321 0.90717 0.89810 0.89478 0.90028 0.91354 0.93794 0.83182 0.89755 0.93903 0.77463 0.91855 0.88090 0.91184 0.90413 0.91525 0.90172 0.90176 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 8.75 37.16 0.33 -0.59 16 2 C -0.10 -0.78 1.70 -91.77 -0.16 -0.94 16 3 H 0.09 0.60 7.48 -51.93 -0.39 0.21 16 4 C 0.53 6.27 6.81 -10.99 -0.07 6.19 16 5 O -0.53 -8.46 14.73 5.55 0.08 -8.38 16 6 N -0.62 -6.47 3.06 -163.01 -0.50 -6.97 16 7 C 0.10 0.69 6.42 -2.53 -0.02 0.67 16 8 C -0.14 -0.96 7.09 -24.59 -0.17 -1.14 16 9 C -0.11 -1.15 6.32 -24.89 -0.16 -1.31 16 10 C 0.14 1.73 3.11 -66.95 -0.21 1.53 16 11 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 12 C 0.05 0.72 5.10 -3.82 -0.02 0.70 16 13 N -0.66 -11.51 5.92 -115.06 -0.68 -12.20 16 14 C 0.05 1.00 6.16 -4.98 -0.03 0.97 16 15 C 0.44 10.87 7.82 -10.99 -0.09 10.79 16 16 O -0.58 -16.27 15.78 5.54 0.09 -16.18 16 17 N -0.56 -14.81 5.29 -10.96 -0.06 -14.87 16 18 C -0.30 -8.55 9.68 -14.93 -0.14 -8.69 16 19 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -25.12 13.05 55.50 0.72 -24.40 16 22 Si 0.93 21.48 29.55 -169.99 -5.02 16.46 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 26 C -0.09 -0.79 2.68 -89.81 -0.24 -1.03 16 27 C -0.14 -1.19 7.63 -25.77 -0.20 -1.39 16 28 C -0.14 -1.00 8.09 -25.77 -0.21 -1.21 16 29 C -0.13 -0.86 6.86 -25.92 -0.18 -1.04 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.33 7.68 -51.93 -0.40 -0.07 16 32 H 0.06 0.36 6.70 -51.93 -0.35 0.01 16 33 H 0.08 0.40 6.07 -51.93 -0.32 0.08 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.08 0.89 7.75 -51.92 -0.40 0.49 16 39 H 0.07 0.96 7.98 -51.93 -0.41 0.54 16 40 H 0.04 0.73 6.57 -51.93 -0.34 0.38 16 41 H 0.35 6.40 8.49 -39.29 -0.33 6.07 16 42 H 0.08 1.47 8.14 -51.92 -0.42 1.05 16 43 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.39 9.87 7.90 -40.82 -0.32 9.54 16 45 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.10 1.07 7.70 -51.93 -0.40 0.67 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.08 0.62 7.99 -51.93 -0.41 0.21 16 49 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 52 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 411.98 15.07 6.21 6.21 Total: -1.00 -33.37 411.98 -9.91 -43.28 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -9.08 Total: 13.03 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -1.66 Total: 4.01 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -0.51 Total: -58.43 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: 0.17 Total: -24.56 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.37 -9.91 -43.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733343088.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.680 kcal (2) G-P(sol) polarization free energy of solvation -33.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds