Wall clock time and date at job start Tue Mar 31 2020 20:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.46668 * 2 1 4 4 C 1.50700 * 109.47401 * 240.00604 * 2 1 3 5 5 O 1.21287 * 119.99632 * 272.02818 * 4 2 1 6 6 N 1.34772 * 120.00493 * 92.02745 * 4 2 1 7 7 C 1.47022 * 125.65025 * 175.34702 * 6 4 2 8 8 C 1.54328 * 107.26950 * 181.09448 * 7 6 4 9 9 C 1.55150 * 102.94399 * 22.18875 * 8 7 6 10 10 H 1.09003 * 111.03785 * 82.58949 * 9 8 7 11 11 C 1.53006 * 111.00604 * 206.42610 * 9 8 7 12 12 C 1.53002 * 109.46976 * 287.19886 * 11 9 8 13 13 N 1.46899 * 109.46956 * 179.97438 * 12 11 9 14 14 C 1.46899 * 110.99577 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46857 * 180.02562 * 14 13 12 16 16 O 1.21281 * 119.99910 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99796 * 180.02562 * 15 14 13 18 18 C 1.37098 * 119.99820 * 180.02562 * 17 15 14 19 19 H 1.07999 * 120.00167 * 359.97438 * 18 17 15 20 20 C 1.38952 * 120.00011 * 180.02562 * 18 17 15 21 21 N 1.31410 * 119.99655 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99789 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47199 * 89.99972 * 22 20 18 24 24 H 1.48510 * 109.47001 * 209.99869 * 22 20 18 25 25 H 1.48500 * 109.47489 * 329.99294 * 22 20 18 26 26 C 1.47424 * 125.64591 * 355.38252 * 6 4 2 27 27 C 1.53003 * 109.47620 * 119.99711 * 2 1 3 28 28 C 1.53002 * 117.50132 * 248.62697 * 27 2 1 29 29 C 1.52996 * 117.50085 * 180.02562 * 27 2 1 30 30 H 1.09001 * 109.46605 * 183.08008 * 1 2 3 31 31 H 1.08999 * 109.47405 * 303.07373 * 1 2 3 32 32 H 1.08998 * 109.47494 * 63.07996 * 1 2 3 33 33 H 1.08997 * 109.87689 * 300.50515 * 7 6 4 34 34 H 1.08994 * 109.88418 * 61.67046 * 7 6 4 35 35 H 1.08998 * 110.71528 * 263.82515 * 8 7 6 36 36 H 1.09001 * 110.71681 * 140.55302 * 8 7 6 37 37 H 1.08994 * 109.47496 * 167.19818 * 11 9 8 38 38 H 1.09000 * 109.46969 * 47.18984 * 11 9 8 39 39 H 1.09004 * 109.47112 * 59.99607 * 12 11 9 40 40 H 1.08998 * 109.46803 * 299.99829 * 12 11 9 41 41 H 1.00898 * 111.00046 * 303.94980 * 13 12 11 42 42 H 1.08996 * 109.47467 * 59.99728 * 14 13 12 43 43 H 1.09004 * 109.46901 * 299.99503 * 14 13 12 44 44 H 0.97001 * 120.00239 * 359.97438 * 17 15 14 45 45 H 0.97003 * 119.99704 * 180.02562 * 21 20 18 46 46 H 1.09007 * 110.36913 * 36.99953 * 26 6 4 47 47 H 1.09007 * 110.46316 * 274.72417 * 26 6 4 48 48 H 1.08997 * 115.54410 * 34.33798 * 27 2 1 49 49 H 1.08998 * 117.49457 * 359.97438 * 28 27 2 50 50 H 1.08991 * 117.49536 * 145.01797 * 28 27 2 51 51 H 1.08994 * 117.49814 * 214.98116 * 29 27 2 52 52 H 1.08998 * 117.49773 * 0.02562 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.1995 -1.9114 -1.2116 6 7 2.2960 -0.0109 -2.3520 7 6 2.8788 -0.5579 -3.5859 8 6 3.0220 0.6116 -4.5827 9 6 3.0374 1.8569 -3.6574 10 1 4.0336 2.0292 -3.2498 11 6 2.5288 3.0960 -4.3969 12 6 3.5858 3.5605 -5.4008 13 7 3.0973 4.7498 -6.1113 14 6 4.0882 5.2246 -7.0862 15 6 3.5533 6.4432 -7.7933 16 8 2.4545 6.8735 -7.5130 17 7 4.2955 7.0543 -8.7379 18 6 3.8090 8.1633 -9.3808 19 1 2.8310 8.5469 -9.1306 20 6 4.5740 8.7930 -10.3550 21 7 5.7638 8.3259 -10.6597 22 14 3.9108 10.3034 -11.2313 23 1 4.3079 11.5236 -10.4839 24 1 4.4680 10.3622 -12.6067 25 1 2.4295 10.2253 -11.3004 26 6 2.0483 1.4296 -2.5443 27 6 2.0401 -0.7212 1.2493 28 6 2.7420 0.1228 2.3152 29 6 3.5551 -0.8274 1.4345 30 1 -0.3632 -1.0262 0.0552 31 1 -0.3634 0.5608 0.8611 32 1 -0.3634 0.4653 -0.9163 33 1 3.8583 -0.9869 -3.3747 34 1 2.2196 -1.3203 -4.0010 35 1 2.1699 0.6461 -5.2615 36 1 3.9563 0.5324 -5.1384 37 1 2.3341 3.8931 -3.6794 38 1 1.6081 2.8508 -4.9263 39 1 3.7805 2.7634 -6.1184 40 1 4.5066 3.8057 -4.8715 41 1 2.2111 4.5659 -6.5573 42 1 4.2863 4.4388 -7.8151 43 1 5.0126 5.4817 -6.5689 44 1 5.1741 6.7100 -8.9623 45 1 6.2980 8.7657 -11.3395 46 1 2.2539 1.9762 -1.6238 47 1 1.0204 1.6002 -2.8643 48 1 1.4312 -1.5585 1.5902 49 1 2.8406 1.1917 2.1262 50 1 2.5947 -0.1592 3.3576 51 1 3.9431 -1.7347 1.8975 52 1 4.1884 -0.3832 0.6667 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733639826.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:16 Heat of formation + Delta-G solvation = -59.657216 kcal Electronic energy + Delta-G solvation = -28369.551031 eV Core-core repulsion = 24369.031982 eV Total energy + Delta-G solvation = -4000.519049 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.70473 -38.73580 -38.24553 -37.22100 -35.81631 -33.94508 -33.25040 -32.53102 -31.22832 -30.19592 -28.58434 -26.12752 -25.34842 -24.09475 -23.36694 -22.71408 -22.20732 -21.36128 -20.51932 -19.27538 -19.13615 -17.89316 -17.63592 -16.68334 -16.21115 -16.15454 -15.66013 -15.32446 -14.99636 -14.81167 -14.49595 -14.35622 -14.19882 -13.89210 -13.71106 -13.51806 -13.36223 -13.09369 -12.98383 -12.64200 -12.48405 -12.41154 -12.10367 -12.06311 -11.92340 -11.62306 -11.53031 -11.47131 -11.40388 -11.10733 -11.06099 -11.00331 -10.79570 -10.72913 -10.57731 -10.40400 -10.22904 -9.87094 -9.52140 -8.98231 -8.47855 -8.07568 -7.97089 -6.42927 -3.83794 2.33317 2.56711 3.17092 3.25750 3.31496 3.41941 3.89314 3.93928 4.07736 4.09268 4.14941 4.29843 4.43350 4.45902 4.57739 4.68132 4.70499 4.83223 4.86160 4.94984 5.01510 5.05240 5.12863 5.20779 5.22882 5.26058 5.29662 5.31071 5.35073 5.40481 5.48255 5.49986 5.53577 5.54553 5.64101 5.65285 5.72947 5.77939 5.80829 5.84700 5.95138 5.96164 6.05795 6.09435 6.25950 7.16292 7.20298 7.54059 7.64440 7.86877 8.05191 8.60075 9.16702 9.53146 10.04555 10.74800 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.028326 B = 0.001481 C = 0.001464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.257035 B =18901.514847 C =19116.641967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.077 4.077 3 H 0.091 0.909 4 C 0.534 3.466 5 O -0.536 6.536 6 N -0.621 5.621 7 C 0.107 3.893 8 C -0.129 4.129 9 C -0.098 4.098 10 H 0.088 0.912 11 C -0.106 4.106 12 C 0.060 3.940 13 N -0.670 5.670 14 C 0.051 3.949 15 C 0.440 3.560 16 O -0.584 6.584 17 N -0.564 5.564 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C 0.102 3.898 27 C -0.135 4.135 28 C -0.177 4.177 29 C -0.172 4.172 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.027 0.973 40 H 0.070 0.930 41 H 0.349 0.651 42 H 0.043 0.957 43 H 0.085 0.915 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.078 0.922 47 H 0.074 0.926 48 H 0.110 0.890 49 H 0.095 0.905 50 H 0.096 0.904 51 H 0.095 0.905 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.365 -18.711 20.735 28.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.098 4.098 3 H 0.109 0.891 4 C 0.323 3.677 5 O -0.412 6.412 6 N -0.355 5.355 7 C -0.015 4.015 8 C -0.167 4.167 9 C -0.117 4.117 10 H 0.106 0.894 11 C -0.144 4.144 12 C -0.069 4.069 13 N -0.303 5.303 14 C -0.082 4.082 15 C 0.226 3.774 16 O -0.468 6.468 17 N -0.201 5.201 18 C -0.430 4.430 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.021 4.021 27 C -0.154 4.154 28 C -0.214 4.214 29 C -0.209 4.209 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.045 0.955 40 H 0.088 0.912 41 H 0.168 0.832 42 H 0.061 0.939 43 H 0.103 0.897 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.096 0.904 47 H 0.092 0.908 48 H 0.128 0.872 49 H 0.113 0.887 50 H 0.115 0.885 51 H 0.114 0.886 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.695 -18.617 21.339 28.705 hybrid contribution 0.388 -0.075 -1.425 1.479 sum -4.307 -18.692 19.914 27.650 Atomic orbital electron populations 1.21682 0.92002 1.03096 1.02751 1.20896 0.97959 0.99638 0.91315 0.89063 1.20336 0.77155 0.87149 0.83073 1.90696 1.52591 1.14347 1.83586 1.48573 1.63144 1.10244 1.13553 1.21933 0.98612 0.96715 0.84283 1.22784 1.03493 0.93282 0.97148 1.22366 0.99514 0.94825 0.95041 0.89403 1.21484 0.98599 0.95978 0.98384 1.21948 0.98083 0.90986 0.95933 1.60068 1.05925 1.32606 1.31673 1.21664 0.96102 0.96426 0.93989 1.19823 0.87133 0.86905 0.83568 1.90516 1.21577 1.67532 1.67161 1.41870 1.18051 1.26550 1.33582 1.19712 1.03242 1.03831 1.16190 0.87911 1.25264 0.95509 0.99559 0.97605 1.69614 1.10410 1.41322 1.32965 0.85850 0.79130 0.81008 0.78249 1.20384 1.20943 1.19431 1.22460 0.99727 0.80547 0.99381 1.22016 0.95689 1.01747 0.95902 1.23074 1.04353 0.97589 0.96380 1.22869 0.93599 1.01641 1.02767 0.91744 0.91017 0.92045 0.91517 0.91489 0.90228 0.89742 0.90328 0.91487 0.95506 0.91171 0.83230 0.93935 0.89660 0.77462 0.91875 0.90390 0.90797 0.87158 0.88661 0.88530 0.88618 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.16 37.16 0.34 -0.51 16 2 C -0.08 -0.57 2.46 -91.77 -0.23 -0.79 16 3 H 0.09 0.55 6.24 -51.92 -0.32 0.23 16 4 C 0.53 5.46 6.53 -10.99 -0.07 5.39 16 5 O -0.54 -7.48 16.69 5.55 0.09 -7.39 16 6 N -0.62 -5.40 3.33 -170.51 -0.57 -5.97 16 7 C 0.11 0.89 6.87 -3.06 -0.02 0.87 16 8 C -0.13 -0.87 5.90 -24.90 -0.15 -1.02 16 9 C -0.10 -0.66 3.00 -88.47 -0.27 -0.93 16 10 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 11 C -0.11 -0.89 4.98 -26.73 -0.13 -1.02 16 12 C 0.06 0.64 5.59 -3.82 -0.02 0.62 16 13 N -0.67 -10.23 6.13 -115.05 -0.70 -10.94 16 14 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 15 C 0.44 10.29 7.82 -10.98 -0.09 10.20 16 16 O -0.58 -15.72 15.78 5.56 0.09 -15.63 16 17 N -0.56 -14.20 5.29 -10.96 -0.06 -14.25 16 18 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 19 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 22 Si 0.93 20.91 29.55 -169.99 -5.02 15.88 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 26 C 0.10 0.67 6.20 -2.53 -0.02 0.66 16 27 C -0.13 -1.02 4.64 -90.62 -0.42 -1.44 16 28 C -0.18 -1.07 10.17 -26.75 -0.27 -1.34 16 29 C -0.17 -1.32 9.82 -26.76 -0.26 -1.58 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.54 7.91 -51.93 -0.41 0.13 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.56 7.97 -51.93 -0.41 0.14 16 39 H 0.03 0.27 7.75 -51.93 -0.40 -0.13 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.35 5.48 8.43 -39.29 -0.33 5.15 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 44 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 45 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.08 0.43 6.66 -51.93 -0.35 0.08 16 47 H 0.07 0.46 8.03 -51.93 -0.42 0.04 16 48 H 0.11 0.86 8.11 -51.93 -0.42 0.44 16 49 H 0.09 0.51 8.05 -51.93 -0.42 0.09 16 50 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 52 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 422.14 15.07 6.36 6.36 Total: -1.00 -33.26 422.14 -10.20 -43.46 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -9.24 Total: 10.17 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -1.87 Total: 1.96 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: -0.61 Total: -54.81 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: 0.18 Total: -23.02 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -33.26 -10.20 -43.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733639826.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.197 kcal (2) G-P(sol) polarization free energy of solvation -33.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds