Wall clock time and date at job start Tue Mar 31 2020 20:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.46668 * 2 1 4 4 C 1.50700 * 109.47401 * 240.00604 * 2 1 3 5 5 O 1.21287 * 119.99632 * 272.02818 * 4 2 1 6 6 N 1.34772 * 120.00493 * 92.02745 * 4 2 1 7 7 C 1.47022 * 125.65025 * 175.34702 * 6 4 2 8 8 C 1.54328 * 107.26950 * 181.09448 * 7 6 4 9 9 C 1.55150 * 102.94399 * 22.18875 * 8 7 6 10 10 H 1.09003 * 111.03785 * 82.58949 * 9 8 7 11 11 C 1.53006 * 111.00604 * 206.42610 * 9 8 7 12 12 C 1.53002 * 109.46976 * 287.19886 * 11 9 8 13 13 N 1.46899 * 109.46956 * 179.97438 * 12 11 9 14 14 C 1.46899 * 110.99577 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46857 * 180.02562 * 14 13 12 16 16 O 1.21281 * 119.99910 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99796 * 180.02562 * 15 14 13 18 18 C 1.37098 * 119.99820 * 180.02562 * 17 15 14 19 19 H 1.07999 * 120.00167 * 359.97438 * 18 17 15 20 20 C 1.38952 * 120.00011 * 180.02562 * 18 17 15 21 21 N 1.31410 * 119.99655 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99789 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47199 * 89.99972 * 22 20 18 24 24 H 1.48510 * 109.47001 * 209.99869 * 22 20 18 25 25 H 1.48500 * 109.47489 * 329.99294 * 22 20 18 26 26 C 1.47424 * 125.64591 * 355.38252 * 6 4 2 27 27 C 1.53003 * 109.47620 * 119.99711 * 2 1 3 28 28 C 1.53002 * 117.50132 * 248.62697 * 27 2 1 29 29 C 1.52996 * 117.50085 * 180.02562 * 27 2 1 30 30 H 1.09001 * 109.46605 * 183.08008 * 1 2 3 31 31 H 1.08999 * 109.47405 * 303.07373 * 1 2 3 32 32 H 1.08998 * 109.47494 * 63.07996 * 1 2 3 33 33 H 1.08997 * 109.87689 * 300.50515 * 7 6 4 34 34 H 1.08994 * 109.88418 * 61.67046 * 7 6 4 35 35 H 1.08998 * 110.71528 * 263.82515 * 8 7 6 36 36 H 1.09001 * 110.71681 * 140.55302 * 8 7 6 37 37 H 1.08994 * 109.47496 * 167.19818 * 11 9 8 38 38 H 1.09000 * 109.46969 * 47.18984 * 11 9 8 39 39 H 1.09004 * 109.47112 * 59.99607 * 12 11 9 40 40 H 1.08998 * 109.46803 * 299.99829 * 12 11 9 41 41 H 1.00898 * 111.00046 * 303.94980 * 13 12 11 42 42 H 1.08996 * 109.47467 * 59.99728 * 14 13 12 43 43 H 1.09004 * 109.46901 * 299.99503 * 14 13 12 44 44 H 0.97001 * 120.00239 * 359.97438 * 17 15 14 45 45 H 0.97003 * 119.99704 * 180.02562 * 21 20 18 46 46 H 1.09007 * 110.36913 * 36.99953 * 26 6 4 47 47 H 1.09007 * 110.46316 * 274.72417 * 26 6 4 48 48 H 1.08997 * 115.54410 * 34.33798 * 27 2 1 49 49 H 1.08998 * 117.49457 * 359.97438 * 28 27 2 50 50 H 1.08991 * 117.49536 * 145.01797 * 28 27 2 51 51 H 1.08994 * 117.49814 * 214.98116 * 29 27 2 52 52 H 1.08998 * 117.49773 * 0.02562 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.1995 -1.9114 -1.2116 6 7 2.2960 -0.0109 -2.3520 7 6 2.8788 -0.5579 -3.5859 8 6 3.0220 0.6116 -4.5827 9 6 3.0374 1.8569 -3.6574 10 1 4.0336 2.0292 -3.2498 11 6 2.5288 3.0960 -4.3969 12 6 3.5858 3.5605 -5.4008 13 7 3.0973 4.7498 -6.1113 14 6 4.0882 5.2246 -7.0862 15 6 3.5533 6.4432 -7.7933 16 8 2.4545 6.8735 -7.5130 17 7 4.2955 7.0543 -8.7379 18 6 3.8090 8.1633 -9.3808 19 1 2.8310 8.5469 -9.1306 20 6 4.5740 8.7930 -10.3550 21 7 5.7638 8.3259 -10.6597 22 14 3.9108 10.3034 -11.2313 23 1 4.3079 11.5236 -10.4839 24 1 4.4680 10.3622 -12.6067 25 1 2.4295 10.2253 -11.3004 26 6 2.0483 1.4296 -2.5443 27 6 2.0401 -0.7212 1.2493 28 6 2.7420 0.1228 2.3152 29 6 3.5551 -0.8274 1.4345 30 1 -0.3632 -1.0262 0.0552 31 1 -0.3634 0.5608 0.8611 32 1 -0.3634 0.4653 -0.9163 33 1 3.8583 -0.9869 -3.3747 34 1 2.2196 -1.3203 -4.0010 35 1 2.1699 0.6461 -5.2615 36 1 3.9563 0.5324 -5.1384 37 1 2.3341 3.8931 -3.6794 38 1 1.6081 2.8508 -4.9263 39 1 3.7805 2.7634 -6.1184 40 1 4.5066 3.8057 -4.8715 41 1 2.2111 4.5659 -6.5573 42 1 4.2863 4.4388 -7.8151 43 1 5.0126 5.4817 -6.5689 44 1 5.1741 6.7100 -8.9623 45 1 6.2980 8.7657 -11.3395 46 1 2.2539 1.9762 -1.6238 47 1 1.0204 1.6002 -2.8643 48 1 1.4312 -1.5585 1.5902 49 1 2.8406 1.1917 2.1262 50 1 2.5947 -0.1592 3.3576 51 1 3.9431 -1.7347 1.8975 52 1 4.1884 -0.3832 0.6667 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733639826.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:15 Heat of formation + Delta-G solvation = -81.678142 kcal Electronic energy + Delta-G solvation = -28370.505930 eV Core-core repulsion = 24369.031982 eV Total energy + Delta-G solvation = -4001.473948 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.40024 -40.14523 -39.29511 -37.91742 -36.94866 -35.86969 -34.07211 -33.32232 -33.13348 -30.89024 -29.55407 -27.55170 -26.06160 -25.53481 -24.04995 -23.24160 -23.10606 -21.95559 -21.30820 -20.85983 -19.90403 -19.83321 -18.30815 -17.81778 -17.27956 -17.01634 -16.87976 -16.45819 -15.98821 -15.90720 -15.63602 -15.45001 -15.31757 -15.08342 -14.83931 -14.40927 -14.13928 -14.00025 -13.78795 -13.54561 -13.52968 -13.30502 -13.11371 -13.05020 -12.96272 -12.72274 -12.66548 -12.42872 -12.40888 -12.15705 -12.11848 -12.07968 -11.77931 -11.60811 -11.49912 -11.42766 -11.36983 -11.12541 -10.59666 -10.32686 -10.00449 -9.69826 -9.26529 -8.45786 -5.94528 1.39220 1.43092 1.55669 1.57798 1.91515 2.06876 2.30352 2.85315 2.96185 3.21765 3.43866 3.51049 3.53720 3.63763 3.84269 3.87463 3.93361 4.14648 4.15277 4.21016 4.31048 4.33292 4.37645 4.42141 4.44616 4.51341 4.54724 4.58853 4.68250 4.73575 4.75740 4.80327 4.82350 4.84929 4.90633 4.93235 5.01641 5.03060 5.14990 5.15770 5.21748 5.30410 5.31454 5.36210 5.41952 5.45519 5.92543 6.15086 6.47391 6.47768 6.61369 7.12190 7.13720 7.57723 8.12958 8.71537 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.028326 B = 0.001481 C = 0.001464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.257035 B =18901.514847 C =19116.641967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.072 4.072 3 H 0.110 0.890 4 C 0.527 3.473 5 O -0.583 6.583 6 N -0.620 5.620 7 C 0.103 3.897 8 C -0.122 4.122 9 C -0.088 4.088 10 H 0.092 0.908 11 C -0.096 4.096 12 C 0.061 3.939 13 N -0.686 5.686 14 C 0.065 3.935 15 C 0.437 3.563 16 O -0.623 6.623 17 N -0.574 5.574 18 C -0.335 4.335 19 H 0.079 0.921 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.993 3.007 23 H -0.271 1.271 24 H -0.271 1.271 25 H -0.273 1.273 26 C 0.100 3.900 27 C -0.147 4.147 28 C -0.155 4.155 29 C -0.188 4.188 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.040 0.960 40 H 0.076 0.924 41 H 0.344 0.656 42 H 0.065 0.935 43 H 0.103 0.897 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.095 0.905 47 H 0.082 0.918 48 H 0.102 0.898 49 H 0.108 0.892 50 H 0.108 0.892 51 H 0.091 0.909 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.186 -17.993 21.314 28.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.093 4.093 3 H 0.128 0.872 4 C 0.318 3.682 5 O -0.463 6.463 6 N -0.354 5.354 7 C -0.020 4.020 8 C -0.160 4.160 9 C -0.108 4.108 10 H 0.111 0.889 11 C -0.135 4.135 12 C -0.068 4.068 13 N -0.318 5.318 14 C -0.067 4.067 15 C 0.224 3.776 16 O -0.510 6.510 17 N -0.211 5.211 18 C -0.465 4.465 19 H 0.097 0.903 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.817 3.183 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.198 1.198 26 C -0.022 4.022 27 C -0.165 4.165 28 C -0.192 4.192 29 C -0.225 4.225 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.058 0.942 40 H 0.094 0.906 41 H 0.162 0.838 42 H 0.083 0.917 43 H 0.121 0.879 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.113 0.887 47 H 0.100 0.900 48 H 0.120 0.880 49 H 0.126 0.874 50 H 0.126 0.874 51 H 0.110 0.890 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.492 -17.897 21.918 28.651 hybrid contribution 0.335 -0.355 -1.585 1.658 sum -4.157 -18.251 20.333 27.637 Atomic orbital electron populations 1.21682 0.91054 1.02649 1.03835 1.20936 0.98640 0.99996 0.89703 0.87216 1.20919 0.76496 0.86777 0.84052 1.90667 1.54788 1.16424 1.84448 1.48681 1.62273 1.11173 1.13226 1.21971 0.97966 0.97329 0.84703 1.22754 1.04082 0.92388 0.96729 1.22256 0.99716 0.93950 0.94842 0.88928 1.21372 0.97978 0.96326 0.97789 1.22056 0.98898 0.89633 0.96201 1.60086 1.05439 1.35188 1.31093 1.21523 0.96660 0.93956 0.94586 1.20948 0.86294 0.87825 0.82515 1.90483 1.23392 1.69025 1.68101 1.41948 1.18455 1.26462 1.34264 1.19682 1.03050 1.05723 1.18032 0.90294 1.26034 0.95632 1.01942 0.97633 1.69672 1.10978 1.42254 1.33207 0.84924 0.78257 0.77577 0.77556 1.19677 1.19587 1.19753 1.22602 1.00150 0.79254 1.00188 1.22052 0.95362 1.02325 0.96798 1.23150 1.01788 0.97822 0.96415 1.22872 0.93736 1.02369 1.03561 0.93092 0.89125 0.91609 0.92271 0.92505 0.89932 0.88901 0.90632 0.91331 0.94213 0.90576 0.83787 0.91674 0.87929 0.76976 0.91321 0.88718 0.89983 0.88001 0.87362 0.87384 0.89026 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 9.16 71.98 0.66 -0.82 16 2 C -0.07 -0.97 2.46 -11.54 -0.03 -1.00 16 3 H 0.11 1.05 6.24 -2.38 -0.01 1.03 16 4 C 0.53 10.67 6.53 87.66 0.57 11.24 16 5 O -0.58 -16.89 16.69 -3.05 -0.05 -16.94 16 6 N -0.62 -10.21 3.33 -811.77 -2.70 -12.91 16 7 C 0.10 1.66 6.87 86.73 0.60 2.26 16 8 C -0.12 -1.42 5.90 31.78 0.19 -1.23 16 9 C -0.09 -0.97 3.00 -9.40 -0.03 -1.00 16 10 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 11 C -0.10 -1.36 4.98 30.60 0.15 -1.21 16 12 C 0.06 1.13 5.59 86.30 0.48 1.62 16 13 N -0.69 -19.68 6.13 -517.92 -3.17 -22.86 16 14 C 0.07 2.12 6.17 85.56 0.53 2.65 16 15 C 0.44 20.37 7.82 87.66 0.69 21.05 16 16 O -0.62 -34.02 15.78 -3.03 -0.05 -34.07 16 17 N -0.57 -29.10 5.29 -306.98 -1.62 -30.72 16 18 C -0.34 -18.91 9.68 84.04 0.81 -18.10 16 19 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 20 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 21 N -0.92 -49.19 13.05 21.66 0.28 -48.90 16 22 Si 0.99 42.50 29.55 68.60 2.03 44.52 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 24 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 C 0.10 1.09 6.20 86.86 0.54 1.63 16 27 C -0.15 -2.12 4.64 -10.79 -0.05 -2.17 16 28 C -0.15 -1.59 10.17 30.58 0.31 -1.28 16 29 C -0.19 -2.84 9.82 30.58 0.30 -2.54 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 0.94 7.91 -2.39 -0.02 0.93 16 36 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 38 H 0.07 0.97 7.97 -2.39 -0.02 0.95 16 39 H 0.04 0.67 7.75 -2.38 -0.02 0.65 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.34 10.39 8.43 -89.70 -0.76 9.64 16 42 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.10 3.01 8.14 -2.38 -0.02 3.00 16 44 H 0.40 19.03 7.90 -92.71 -0.73 18.29 16 45 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 46 H 0.09 0.75 6.66 -2.38 -0.02 0.73 16 47 H 0.08 0.81 8.03 -2.38 -0.02 0.79 16 48 H 0.10 1.61 8.11 -2.39 -0.02 1.59 16 49 H 0.11 0.84 8.05 -2.39 -0.02 0.83 16 50 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 52 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -73.14 422.14 0.33 -72.82 By element: Atomic # 1 Polarization: 38.73 SS G_CDS: -0.58 Total: 38.16 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 6.19 Total: 10.90 kcal Atomic # 7 Polarization: -108.17 SS G_CDS: -7.21 Total: -115.39 kcal Atomic # 8 Polarization: -50.91 SS G_CDS: -0.10 Total: -51.01 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -73.14 0.33 -72.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733639826.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.863 kcal (2) G-P(sol) polarization free energy of solvation -73.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds