Wall clock time and date at job start Tue Mar 31 2020 21:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47577 * 2 1 4 4 N 1.46501 * 109.46830 * 120.00335 * 2 1 3 5 5 C 1.34775 * 119.99650 * 274.99632 * 4 2 1 6 6 O 1.21280 * 120.00223 * 0.02562 * 5 4 2 7 7 C 1.50708 * 119.99712 * 180.02562 * 5 4 2 8 8 C 1.54262 * 110.03251 * 297.90547 * 7 5 4 9 9 C 1.54960 * 104.16102 * 217.13817 * 8 7 5 10 10 C 1.54886 * 102.77931 * 37.88908 * 9 8 7 11 11 C 1.53880 * 110.02978 * 180.68936 * 7 5 4 12 12 C 1.50700 * 109.47281 * 239.99811 * 2 1 3 13 13 O 1.21285 * 120.00459 * 240.00430 * 12 2 1 14 14 N 1.34781 * 119.99692 * 60.00154 * 12 2 1 15 15 C 1.46501 * 119.99944 * 179.97438 * 14 12 2 16 16 H 1.08999 * 109.47402 * 325.00729 * 15 14 12 17 17 C 1.53006 * 109.47082 * 84.99833 * 15 14 12 18 18 C 1.52997 * 109.47293 * 205.00004 * 15 14 12 19 19 C 1.53948 * 113.74067 * 161.82459 * 18 15 14 20 20 N 1.47815 * 86.03440 * 222.08748 * 19 18 15 21 21 C 1.36938 * 134.45502 * 204.64492 * 20 19 18 22 22 H 1.08002 * 120.00032 * 179.86225 * 21 20 19 23 23 C 1.38809 * 120.00201 * 359.87013 * 21 20 19 24 24 N 1.31616 * 119.99902 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00073 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47207 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.46995 * 119.99439 * 25 23 21 28 28 H 1.48500 * 109.46659 * 239.99371 * 25 23 21 29 29 C 1.47584 * 91.05521 * 24.54972 * 20 19 18 30 30 H 1.08995 * 109.46946 * 300.00213 * 1 2 3 31 31 H 1.09003 * 109.46943 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46701 * 60.00019 * 1 2 3 33 33 H 0.96997 * 120.00240 * 95.00256 * 4 2 1 34 34 H 1.08996 * 110.01633 * 59.30376 * 7 5 4 35 35 H 1.08995 * 110.49084 * 335.79047 * 8 7 5 36 36 H 1.09006 * 110.48072 * 98.42663 * 8 7 5 37 37 H 1.09001 * 110.72070 * 279.57489 * 9 8 7 38 38 H 1.09003 * 110.92159 * 156.29878 * 9 8 7 39 39 H 1.08999 * 110.49093 * 203.40452 * 10 9 8 40 40 H 1.09004 * 110.59489 * 80.81718 * 10 9 8 41 41 H 1.08994 * 110.03191 * 238.57125 * 11 7 5 42 42 H 1.08997 * 110.03008 * 359.95678 * 11 7 5 43 43 H 0.96991 * 120.00079 * 359.97438 * 14 12 2 44 44 H 1.08994 * 109.47117 * 180.02562 * 17 15 14 45 45 H 1.08995 * 109.47184 * 300.06824 * 17 15 14 46 46 H 1.09000 * 109.46474 * 60.06795 * 17 15 14 47 47 H 1.08991 * 112.94742 * 293.41545 * 18 15 14 48 48 H 1.09004 * 113.76968 * 336.34746 * 19 18 15 49 49 H 1.08996 * 113.76972 * 107.75100 * 19 18 15 50 50 H 0.97005 * 119.99998 * 180.02562 * 24 23 21 51 51 H 1.08997 * 113.76862 * 221.15978 * 29 20 19 52 52 H 1.08995 * 113.87180 * 89.76808 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8582 1.1583 2.4117 7 6 2.6499 -0.7287 3.5875 8 6 1.6792 -1.8628 3.9766 9 6 1.6762 -1.8441 5.5261 10 6 1.7423 -0.3311 5.8507 11 6 2.6904 0.2447 4.7785 12 6 2.0324 -0.7104 -1.2304 13 8 2.7296 -1.6966 -1.1192 14 7 1.7068 -0.2499 -2.4546 15 6 2.1956 -0.9402 -3.6507 16 1 3.1949 -1.3321 -3.4613 17 6 1.2521 -2.0945 -3.9948 18 6 2.2469 0.0430 -4.8218 19 6 3.1384 -0.4257 -5.9861 20 7 3.6170 0.9715 -6.0470 21 6 4.1659 1.7553 -7.0265 22 1 4.4367 2.7784 -6.8109 23 6 4.3743 1.2351 -8.2964 24 7 4.0447 -0.0117 -8.5590 25 14 5.1238 2.3043 -9.6323 26 1 5.4036 3.6563 -9.0856 27 1 6.3900 1.6897 -10.1059 28 1 4.1732 2.4168 -10.7676 29 6 3.2635 1.1831 -4.6298 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 2.2490 -1.6318 1.1526 34 1 3.6444 -1.1350 3.4034 35 1 0.6804 -1.6593 3.5909 36 1 2.0442 -2.8209 3.6065 37 1 2.5507 -2.3622 5.9198 38 1 0.7593 -2.2838 5.9189 39 1 2.1528 -0.1723 6.8478 40 1 0.7542 0.1220 5.7692 41 1 3.7043 0.3101 5.1730 42 1 2.3471 1.2310 4.4664 43 1 1.1489 0.5384 -2.5436 44 1 1.6160 -2.6083 -4.8845 45 1 1.2146 -2.7944 -3.1601 46 1 0.2530 -1.7025 -4.1855 47 1 1.2598 0.3833 -5.1345 48 1 3.9065 -1.1407 -5.6910 49 1 2.5803 -0.7390 -6.8683 50 1 4.1906 -0.3754 -9.4464 51 1 2.8049 2.1517 -4.4313 52 1 4.0673 0.9424 -3.9341 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734112855.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:18 Heat of formation + Delta-G solvation = -41.013079 kcal Electronic energy + Delta-G solvation = -29523.492606 eV Core-core repulsion = 25523.782027 eV Total energy + Delta-G solvation = -3999.710579 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.77172 -39.77926 -38.19980 -37.37000 -35.26933 -34.85001 -32.35677 -31.64010 -30.18323 -29.11204 -28.88957 -27.50571 -25.21570 -24.61626 -23.94580 -22.34684 -21.25275 -20.95618 -20.30384 -19.98067 -19.12928 -17.99564 -17.13666 -16.69166 -16.45500 -15.93785 -15.62978 -15.41188 -14.94242 -14.87086 -14.77208 -14.02169 -13.87495 -13.79651 -13.61716 -13.58239 -13.28869 -12.92458 -12.63476 -12.33259 -12.11854 -12.06139 -11.85692 -11.69562 -11.63400 -11.48659 -11.45546 -11.42969 -11.25426 -11.15744 -10.91352 -10.85304 -10.69971 -10.37156 -10.12632 -10.01319 -9.83941 -9.73651 -9.46120 -9.33333 -8.94634 -8.81160 -6.89033 -5.78335 -3.10351 2.36616 2.54526 2.68550 3.31302 3.38039 3.43441 3.45924 4.09422 4.20923 4.34611 4.43819 4.50944 4.75451 4.84691 4.90475 4.99631 5.07429 5.08199 5.11404 5.14238 5.23852 5.29438 5.31784 5.36701 5.45376 5.49509 5.51501 5.55867 5.60311 5.72912 5.77449 5.77927 5.82398 5.93467 5.95411 5.99368 6.02479 6.15168 6.23306 6.32584 6.41016 6.52365 6.59800 6.74895 7.20351 7.25821 7.33847 7.48685 7.54783 7.96842 7.97395 8.14756 9.03550 9.69679 10.58410 11.39046 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025583 B = 0.001928 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.223116 B =14516.261231 C =15003.597138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.122 3.878 3 H 0.114 0.886 4 N -0.711 5.711 5 C 0.523 3.477 6 O -0.540 6.540 7 C -0.113 4.113 8 C -0.116 4.116 9 C -0.124 4.124 10 C -0.124 4.124 11 C -0.120 4.120 12 C 0.510 3.490 13 O -0.541 6.541 14 N -0.711 5.711 15 C 0.150 3.850 16 H 0.088 0.912 17 C -0.157 4.157 18 C -0.147 4.147 19 C 0.176 3.824 20 N -0.612 5.612 21 C -0.222 4.222 22 H 0.080 0.920 23 C -0.009 4.009 24 N -0.922 5.922 25 Si 0.912 3.088 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.290 1.290 29 C 0.125 3.875 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.410 0.590 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.401 0.599 44 H 0.071 0.929 45 H 0.052 0.948 46 H 0.054 0.946 47 H 0.089 0.911 48 H 0.028 0.972 49 H 0.075 0.925 50 H 0.253 0.747 51 H 0.041 0.959 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.246 -4.961 26.113 28.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.014 3.986 3 H 0.132 0.868 4 N -0.364 5.364 5 C 0.310 3.690 6 O -0.417 6.417 7 C -0.134 4.134 8 C -0.153 4.153 9 C -0.161 4.161 10 C -0.162 4.162 11 C -0.157 4.157 12 C 0.295 3.705 13 O -0.418 6.418 14 N -0.361 5.361 15 C 0.046 3.954 16 H 0.106 0.894 17 C -0.215 4.215 18 C -0.167 4.167 19 C 0.050 3.950 20 N -0.338 5.338 21 C -0.350 4.350 22 H 0.098 0.902 23 C -0.205 4.205 24 N -0.569 5.569 25 Si 0.742 3.258 26 H -0.205 1.205 27 H -0.217 1.217 28 H -0.217 1.217 29 C -0.001 4.001 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.247 0.753 34 H 0.118 0.882 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.235 0.765 44 H 0.090 0.910 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.108 0.892 48 H 0.046 0.954 49 H 0.093 0.907 50 H 0.063 0.937 51 H 0.059 0.941 52 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -8.810 -4.738 25.861 27.728 hybrid contribution 0.476 0.419 -0.970 1.158 sum -8.334 -4.319 24.892 26.603 Atomic orbital electron populations 1.22117 0.92847 1.03057 1.03608 1.20795 0.95658 0.98285 0.83908 0.86825 1.45760 1.67391 1.14873 1.08392 1.20619 0.76960 0.87117 0.84348 1.90671 1.50218 1.16046 1.84745 1.21956 1.01046 0.97128 0.93299 1.22378 0.99068 0.97255 0.96646 1.22511 1.02012 0.96693 0.94925 1.22364 0.99935 0.95305 0.98585 1.22175 1.00180 1.00046 0.93334 1.20487 0.80331 0.84771 0.84902 1.90692 1.38070 1.26481 1.86594 1.46085 1.52877 1.31765 1.05382 1.21163 0.98461 0.92634 0.83165 0.89406 1.22102 0.99471 0.98087 1.01880 1.23870 1.00060 0.96965 0.95847 1.22230 0.91999 0.87389 0.93382 1.45995 1.73628 1.09410 1.04792 1.19075 1.33824 0.93481 0.88611 0.90239 1.24783 1.01775 0.96459 0.97506 1.69816 1.52907 1.13295 1.20871 0.86050 0.78542 0.79308 0.81893 1.20475 1.21742 1.21686 1.22538 0.93782 0.95686 0.88126 0.90928 0.91790 0.90790 0.75306 0.88157 0.91094 0.90686 0.91199 0.91311 0.91515 0.91534 0.91386 0.89130 0.76506 0.91014 0.92863 0.92689 0.89246 0.95439 0.90660 0.93674 0.94088 0.95069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.38 37.16 0.35 -0.94 16 2 C 0.12 1.25 2.98 -69.08 -0.21 1.04 16 3 H 0.11 1.24 7.58 -51.93 -0.39 0.85 16 4 N -0.71 -7.04 4.89 -54.93 -0.27 -7.31 16 5 C 0.52 5.50 6.97 -10.98 -0.08 5.42 16 6 O -0.54 -7.37 14.87 5.56 0.08 -7.29 16 7 C -0.11 -0.88 3.30 -90.65 -0.30 -1.18 16 8 C -0.12 -0.71 6.29 -25.04 -0.16 -0.87 16 9 C -0.12 -0.68 6.91 -24.70 -0.17 -0.85 16 10 C -0.12 -0.79 6.83 -25.07 -0.17 -0.96 16 11 C -0.12 -0.94 6.40 -25.61 -0.16 -1.10 16 12 C 0.51 6.34 7.19 -10.98 -0.08 6.26 16 13 O -0.54 -8.41 15.50 5.55 0.09 -8.32 16 14 N -0.71 -8.43 4.84 -53.80 -0.26 -8.69 16 15 C 0.15 2.18 2.29 -67.93 -0.16 2.03 16 16 H 0.09 1.50 7.48 -51.93 -0.39 1.11 16 17 C -0.16 -2.06 9.44 37.16 0.35 -1.71 16 18 C -0.15 -2.55 3.35 -89.69 -0.30 -2.85 16 19 C 0.18 4.01 6.98 -2.84 -0.02 3.99 16 20 N -0.61 -15.60 3.70 -177.69 -0.66 -16.26 16 21 C -0.22 -6.26 10.70 -15.06 -0.16 -6.42 16 22 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 23 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 24 N -0.92 -27.25 11.39 55.49 0.63 -26.61 16 25 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 29 C 0.12 2.48 8.38 -2.96 -0.02 2.46 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.50 7.56 -51.93 -0.39 0.11 16 33 H 0.41 3.80 7.78 -40.82 -0.32 3.48 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.48 7.85 -51.93 -0.41 0.07 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.91 6.39 -51.93 -0.33 0.58 16 43 H 0.40 3.86 8.02 -40.82 -0.33 3.53 16 44 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 48 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 49 H 0.08 1.89 7.17 -51.93 -0.37 1.52 16 50 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 51 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 52 H 0.03 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 414.97 15.07 6.25 6.25 Total: -1.00 -33.72 414.97 -9.77 -43.49 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -9.23 Total: 3.60 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -1.38 Total: 3.97 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: -0.56 Total: -58.87 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: 0.17 Total: -15.61 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.72 -9.77 -43.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734112855.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.477 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds