Wall clock time and date at job start Tue Mar 31 2020 21:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47577 * 2 1 4 4 N 1.46501 * 109.46830 * 120.00335 * 2 1 3 5 5 C 1.34775 * 119.99650 * 274.99632 * 4 2 1 6 6 O 1.21280 * 120.00223 * 0.02562 * 5 4 2 7 7 C 1.50708 * 119.99712 * 180.02562 * 5 4 2 8 8 C 1.54262 * 110.03251 * 297.90547 * 7 5 4 9 9 C 1.54960 * 104.16102 * 217.13817 * 8 7 5 10 10 C 1.54886 * 102.77931 * 37.88908 * 9 8 7 11 11 C 1.53880 * 110.02978 * 180.68936 * 7 5 4 12 12 C 1.50700 * 109.47281 * 239.99811 * 2 1 3 13 13 O 1.21285 * 120.00459 * 240.00430 * 12 2 1 14 14 N 1.34781 * 119.99692 * 60.00154 * 12 2 1 15 15 C 1.46501 * 119.99944 * 179.97438 * 14 12 2 16 16 H 1.08999 * 109.47402 * 325.00729 * 15 14 12 17 17 C 1.53006 * 109.47082 * 84.99833 * 15 14 12 18 18 C 1.52997 * 109.47293 * 205.00004 * 15 14 12 19 19 C 1.53948 * 113.74067 * 161.82459 * 18 15 14 20 20 N 1.47815 * 86.03440 * 222.08748 * 19 18 15 21 21 C 1.36938 * 134.45502 * 204.64492 * 20 19 18 22 22 H 1.08002 * 120.00032 * 179.86225 * 21 20 19 23 23 C 1.38809 * 120.00201 * 359.87013 * 21 20 19 24 24 N 1.31616 * 119.99902 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00073 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47207 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.46995 * 119.99439 * 25 23 21 28 28 H 1.48500 * 109.46659 * 239.99371 * 25 23 21 29 29 C 1.47584 * 91.05521 * 24.54972 * 20 19 18 30 30 H 1.08995 * 109.46946 * 300.00213 * 1 2 3 31 31 H 1.09003 * 109.46943 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46701 * 60.00019 * 1 2 3 33 33 H 0.96997 * 120.00240 * 95.00256 * 4 2 1 34 34 H 1.08996 * 110.01633 * 59.30376 * 7 5 4 35 35 H 1.08995 * 110.49084 * 335.79047 * 8 7 5 36 36 H 1.09006 * 110.48072 * 98.42663 * 8 7 5 37 37 H 1.09001 * 110.72070 * 279.57489 * 9 8 7 38 38 H 1.09003 * 110.92159 * 156.29878 * 9 8 7 39 39 H 1.08999 * 110.49093 * 203.40452 * 10 9 8 40 40 H 1.09004 * 110.59489 * 80.81718 * 10 9 8 41 41 H 1.08994 * 110.03191 * 238.57125 * 11 7 5 42 42 H 1.08997 * 110.03008 * 359.95678 * 11 7 5 43 43 H 0.96991 * 120.00079 * 359.97438 * 14 12 2 44 44 H 1.08994 * 109.47117 * 180.02562 * 17 15 14 45 45 H 1.08995 * 109.47184 * 300.06824 * 17 15 14 46 46 H 1.09000 * 109.46474 * 60.06795 * 17 15 14 47 47 H 1.08991 * 112.94742 * 293.41545 * 18 15 14 48 48 H 1.09004 * 113.76968 * 336.34746 * 19 18 15 49 49 H 1.08996 * 113.76972 * 107.75100 * 19 18 15 50 50 H 0.97005 * 119.99998 * 180.02562 * 24 23 21 51 51 H 1.08997 * 113.76862 * 221.15978 * 29 20 19 52 52 H 1.08995 * 113.87180 * 89.76808 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8582 1.1583 2.4117 7 6 2.6499 -0.7287 3.5875 8 6 1.6792 -1.8628 3.9766 9 6 1.6762 -1.8441 5.5261 10 6 1.7423 -0.3311 5.8507 11 6 2.6904 0.2447 4.7785 12 6 2.0324 -0.7104 -1.2304 13 8 2.7296 -1.6966 -1.1192 14 7 1.7068 -0.2499 -2.4546 15 6 2.1956 -0.9402 -3.6507 16 1 3.1949 -1.3321 -3.4613 17 6 1.2521 -2.0945 -3.9948 18 6 2.2469 0.0430 -4.8218 19 6 3.1384 -0.4257 -5.9861 20 7 3.6170 0.9715 -6.0470 21 6 4.1659 1.7553 -7.0265 22 1 4.4367 2.7784 -6.8109 23 6 4.3743 1.2351 -8.2964 24 7 4.0447 -0.0117 -8.5590 25 14 5.1238 2.3043 -9.6323 26 1 5.4036 3.6563 -9.0856 27 1 6.3900 1.6897 -10.1059 28 1 4.1732 2.4168 -10.7676 29 6 3.2635 1.1831 -4.6298 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 2.2490 -1.6318 1.1526 34 1 3.6444 -1.1350 3.4034 35 1 0.6804 -1.6593 3.5909 36 1 2.0442 -2.8209 3.6065 37 1 2.5507 -2.3622 5.9198 38 1 0.7593 -2.2838 5.9189 39 1 2.1528 -0.1723 6.8478 40 1 0.7542 0.1220 5.7692 41 1 3.7043 0.3101 5.1730 42 1 2.3471 1.2310 4.4664 43 1 1.1489 0.5384 -2.5436 44 1 1.6160 -2.6083 -4.8845 45 1 1.2146 -2.7944 -3.1601 46 1 0.2530 -1.7025 -4.1855 47 1 1.2598 0.3833 -5.1345 48 1 3.9065 -1.1407 -5.6910 49 1 2.5803 -0.7390 -6.8683 50 1 4.1906 -0.3754 -9.4464 51 1 2.8049 2.1517 -4.4313 52 1 4.0673 0.9424 -3.9341 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734112855.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:17 Heat of formation + Delta-G solvation = -63.348655 kcal Electronic energy + Delta-G solvation = -29524.461149 eV Core-core repulsion = 25523.782027 eV Total energy + Delta-G solvation = -4000.679122 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.67607 -40.80466 -39.69252 -38.04781 -36.37195 -35.95993 -34.19762 -32.74553 -31.22210 -29.71852 -29.46720 -29.31334 -26.65596 -25.92527 -25.41753 -23.37672 -22.39586 -21.55438 -21.34279 -20.90192 -20.45075 -18.87541 -18.75963 -17.93839 -17.44818 -16.91023 -16.74200 -16.40157 -16.37067 -15.84699 -15.72367 -15.66324 -15.14977 -14.86854 -14.53639 -14.43608 -14.18246 -14.13746 -13.80689 -13.35884 -13.32552 -13.25233 -13.08886 -12.96418 -12.72588 -12.69388 -12.60097 -12.35807 -12.25971 -12.01210 -11.99610 -11.93156 -11.81733 -11.64692 -11.58501 -11.40323 -11.23384 -10.93237 -10.88940 -10.78455 -10.22864 -10.07729 -8.93115 -7.92206 -5.25426 1.44551 1.45476 1.49173 1.55693 1.58783 1.80348 2.38617 2.46103 3.28398 3.38090 3.46812 3.54095 3.67239 3.77013 3.82980 3.96778 4.03176 4.11053 4.26495 4.28188 4.45253 4.48362 4.55254 4.57158 4.58146 4.66835 4.70141 4.76642 4.80169 4.82085 4.84932 4.86313 4.96149 4.99350 5.08518 5.10579 5.17887 5.24517 5.25003 5.25338 5.29293 5.33007 5.45393 5.48146 5.49750 5.54150 5.65092 5.93367 6.46423 6.50487 6.91329 7.14776 7.18028 7.59477 8.55050 9.24957 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025583 B = 0.001928 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.223116 B =14516.261231 C =15003.597138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.127 3.873 3 H 0.109 0.891 4 N -0.708 5.708 5 C 0.521 3.479 6 O -0.575 6.575 7 C -0.112 4.112 8 C -0.112 4.112 9 C -0.120 4.120 10 C -0.124 4.124 11 C -0.122 4.122 12 C 0.515 3.485 13 O -0.572 6.572 14 N -0.701 5.701 15 C 0.163 3.837 16 H 0.062 0.938 17 C -0.151 4.151 18 C -0.108 4.108 19 C 0.171 3.829 20 N -0.644 5.644 21 C -0.235 4.235 22 H 0.082 0.918 23 C -0.068 4.068 24 N -0.953 5.953 25 Si 0.978 3.022 26 H -0.266 1.266 27 H -0.294 1.294 28 H -0.289 1.289 29 C 0.125 3.875 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.414 0.586 34 H 0.112 0.888 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.415 0.585 44 H 0.061 0.939 45 H 0.056 0.944 46 H 0.075 0.925 47 H 0.107 0.893 48 H 0.011 0.989 49 H 0.047 0.953 50 H 0.249 0.751 51 H 0.061 0.939 52 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.279 -4.839 27.537 29.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.018 3.982 3 H 0.126 0.874 4 N -0.361 5.361 5 C 0.309 3.691 6 O -0.455 6.455 7 C -0.133 4.133 8 C -0.150 4.150 9 C -0.157 4.157 10 C -0.161 4.161 11 C -0.160 4.160 12 C 0.301 3.699 13 O -0.451 6.451 14 N -0.352 5.352 15 C 0.058 3.942 16 H 0.080 0.920 17 C -0.209 4.209 18 C -0.128 4.128 19 C 0.045 3.955 20 N -0.371 5.371 21 C -0.364 4.364 22 H 0.100 0.900 23 C -0.261 4.261 24 N -0.602 5.602 25 Si 0.806 3.194 26 H -0.190 1.190 27 H -0.221 1.221 28 H -0.216 1.216 29 C 0.001 3.999 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.252 0.748 34 H 0.130 0.870 35 H 0.082 0.918 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.252 0.748 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.094 0.906 47 H 0.125 0.875 48 H 0.029 0.971 49 H 0.065 0.935 50 H 0.058 0.942 51 H 0.079 0.921 52 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -9.868 -4.600 27.321 29.410 hybrid contribution 0.833 0.396 -1.363 1.646 sum -9.035 -4.205 25.958 27.805 Atomic orbital electron populations 1.22083 0.90895 1.03635 1.04278 1.20783 0.97043 0.97478 0.82888 0.87358 1.45793 1.67039 1.15021 1.08205 1.21105 0.76226 0.86744 0.85030 1.90656 1.51886 1.17622 1.85325 1.22034 1.01967 0.97410 0.91873 1.22389 0.98249 0.97115 0.97273 1.22515 1.02991 0.95930 0.94267 1.22364 0.99145 0.95979 0.98629 1.22175 1.00985 0.98859 0.93933 1.20795 0.79536 0.84272 0.85343 1.90686 1.39433 1.28004 1.87015 1.45864 1.52800 1.32082 1.04441 1.20779 0.97992 0.92396 0.83067 0.91984 1.22032 0.99934 0.97363 1.01545 1.23459 0.99259 0.95644 0.94450 1.22140 0.92487 0.86340 0.94568 1.46435 1.73577 1.10331 1.06753 1.19462 1.33193 0.94089 0.89635 0.90004 1.25626 1.02870 0.97814 0.99775 1.69998 1.54311 1.14895 1.20997 0.85016 0.77224 0.78191 0.78933 1.19030 1.22144 1.21579 1.22690 0.94324 0.97626 0.85301 0.91453 0.91223 0.88935 0.74800 0.86952 0.91750 0.89239 0.90141 0.90406 0.90438 0.92354 0.90514 0.91705 0.74771 0.91989 0.92533 0.90622 0.87470 0.97089 0.93457 0.94208 0.92101 0.95140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.38 71.98 0.68 -1.46 16 2 C 0.13 2.41 2.98 44.25 0.13 2.54 16 3 H 0.11 2.24 7.58 -2.39 -0.02 2.22 16 4 N -0.71 -13.29 4.89 -446.09 -2.18 -15.47 16 5 C 0.52 10.66 6.97 87.66 0.61 11.27 16 6 O -0.58 -15.76 14.87 -3.03 -0.05 -15.81 16 7 C -0.11 -1.61 3.30 -10.81 -0.04 -1.65 16 8 C -0.11 -1.18 6.29 31.69 0.20 -0.99 16 9 C -0.12 -1.06 6.91 31.91 0.22 -0.84 16 10 C -0.12 -1.43 6.83 31.67 0.22 -1.21 16 11 C -0.12 -1.83 6.40 31.32 0.20 -1.63 16 12 C 0.51 11.96 7.19 87.66 0.63 12.59 16 13 O -0.57 -17.20 15.50 -3.05 -0.05 -17.24 16 14 N -0.70 -15.10 4.84 -442.51 -2.14 -17.24 16 15 C 0.16 4.53 2.29 44.99 0.10 4.63 16 16 H 0.06 2.10 7.48 -2.39 -0.02 2.08 16 17 C -0.15 -3.69 9.44 71.98 0.68 -3.01 16 18 C -0.11 -3.61 3.35 -10.13 -0.03 -3.65 16 19 C 0.17 7.92 6.98 86.44 0.60 8.53 16 20 N -0.64 -33.00 3.70 -716.10 -2.65 -35.65 16 21 C -0.24 -13.32 10.70 84.03 0.90 -12.42 16 22 H 0.08 4.45 7.83 -2.91 -0.02 4.42 16 23 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 24 N -0.95 -57.66 11.39 21.65 0.25 -57.41 16 25 Si 0.98 46.01 29.55 68.60 2.03 48.04 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 28 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 29 C 0.13 4.85 8.38 86.49 0.72 5.58 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.09 0.97 7.56 -2.39 -0.02 0.95 16 33 H 0.41 7.17 7.78 -92.71 -0.72 6.45 16 34 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.06 0.77 7.85 -2.39 -0.02 0.75 16 36 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.06 1.34 6.39 -2.39 -0.02 1.32 16 43 H 0.42 6.71 8.02 -92.71 -0.74 5.97 16 44 H 0.06 1.65 8.09 -2.39 -0.02 1.63 16 45 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 47 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 48 H 0.01 0.55 8.03 -2.39 -0.02 0.53 16 49 H 0.05 2.45 7.17 -2.39 -0.02 2.43 16 50 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 51 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 52 H 0.03 1.21 8.10 -2.39 -0.02 1.19 16 Total: -1.00 -74.37 414.97 0.95 -73.43 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: -0.55 Total: 22.51 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 6.29 Total: 14.85 kcal Atomic # 7 Polarization: -119.05 SS G_CDS: -6.73 Total: -125.77 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -0.09 Total: -33.05 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -74.37 0.95 -73.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734112855.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.078 kcal (2) G-P(sol) polarization free energy of solvation -74.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds