Wall clock time and date at job start Tue Mar 31 2020 21:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47123 * 2 1 4 4 N 1.46505 * 109.46964 * 120.00110 * 2 1 3 5 5 C 1.34774 * 120.00020 * 274.99732 * 4 2 1 6 6 O 1.21288 * 119.99746 * 0.02562 * 5 4 2 7 7 C 1.50693 * 120.00286 * 180.02562 * 5 4 2 8 8 C 1.53783 * 113.61662 * 180.02562 * 7 5 4 9 9 C 1.53785 * 87.07804 * 219.93292 * 8 7 5 10 10 C 1.53006 * 113.61096 * 139.97884 * 9 8 7 11 11 C 1.53002 * 113.61471 * 270.79457 * 9 8 7 12 12 C 1.53781 * 87.17620 * 25.38900 * 9 8 7 13 13 C 1.53001 * 109.47109 * 239.99994 * 2 1 3 14 14 C 1.53927 * 113.73497 * 156.72933 * 13 2 1 15 15 N 1.47958 * 86.18191 * 221.91919 * 14 13 2 16 16 C 1.46903 * 111.00129 * 137.58015 * 15 14 13 17 17 C 1.50700 * 109.47088 * 90.64086 * 16 15 14 18 18 O 1.21296 * 120.00013 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00114 * 179.97438 * 17 16 15 20 20 C 1.37093 * 119.99968 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00437 * 0.02562 * 20 19 17 22 22 C 1.38958 * 120.00066 * 180.02562 * 20 19 17 23 23 N 1.31417 * 119.99539 * 359.97438 * 22 20 19 24 24 Si 1.86791 * 120.00121 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47427 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47068 * 119.99996 * 24 22 20 27 27 H 1.48506 * 109.47113 * 239.99824 * 24 22 20 28 28 C 1.47955 * 90.76189 * 24.68735 * 15 14 13 29 29 H 1.08998 * 109.47123 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46960 * 299.99959 * 1 2 3 31 31 H 1.09000 * 109.46872 * 60.00223 * 1 2 3 32 32 H 0.96997 * 120.00257 * 95.00184 * 4 2 1 33 33 H 1.09004 * 112.85065 * 311.19853 * 7 5 4 34 34 H 1.08997 * 113.61737 * 105.38359 * 8 7 5 35 35 H 1.09000 * 113.61138 * 334.47499 * 8 7 5 36 36 H 1.09001 * 109.47002 * 181.52532 * 10 9 8 37 37 H 1.08993 * 109.46955 * 301.52970 * 10 9 8 38 38 H 1.09000 * 109.47050 * 61.52798 * 10 9 8 39 39 H 1.08999 * 109.47105 * 298.47603 * 11 9 8 40 40 H 1.09000 * 109.46611 * 58.47476 * 11 9 8 41 41 H 1.08998 * 109.47047 * 178.47668 * 11 9 8 42 42 H 1.08998 * 113.61545 * 89.15547 * 12 9 8 43 43 H 1.08993 * 113.61303 * 220.06004 * 12 9 8 44 44 H 1.09010 * 112.93595 * 288.43397 * 13 2 1 45 45 H 1.08998 * 113.76175 * 336.23668 * 14 13 2 46 46 H 1.09002 * 113.76359 * 107.60415 * 14 13 2 47 47 H 1.08999 * 109.47149 * 210.64419 * 16 15 14 48 48 H 1.08998 * 109.47093 * 330.64237 * 16 15 14 49 49 H 0.97001 * 119.99949 * 359.97438 * 19 17 16 50 50 H 0.96996 * 119.99673 * 179.97438 * 23 22 20 51 51 H 1.09000 * 113.76053 * 220.98939 * 28 15 14 52 52 H 1.09006 * 113.75871 * 89.63003 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1471 -0.0183 2.3572 6 8 1.8582 1.1584 2.4117 7 6 2.6499 -0.7285 3.5874 8 6 2.7388 0.1761 4.8279 9 6 4.0591 -0.5399 5.1582 10 6 5.1476 0.3956 5.6885 11 6 3.8789 -1.7909 6.0205 12 6 4.1839 -0.8405 3.6552 13 6 2.0400 -0.7213 -1.2493 14 6 3.4669 -0.3155 -1.6598 15 7 2.9605 -0.3147 -3.0500 16 6 3.4682 0.8453 -3.7947 17 6 4.7626 0.4788 -4.4739 18 8 5.2172 -0.6389 -4.3501 19 7 5.4147 1.3927 -5.2196 20 6 6.5925 1.0595 -5.8370 21 1 6.9977 0.0645 -5.7262 22 6 7.2650 2.0019 -6.6054 23 7 6.7717 3.2124 -6.7407 24 14 8.8694 1.5476 -7.4472 25 1 9.2069 0.1345 -7.1401 26 1 8.7225 1.7141 -8.9155 27 1 9.9549 2.4335 -6.9548 28 6 1.5823 -0.0740 -2.5687 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6318 1.1527 33 1 2.1358 -1.6720 3.7714 34 1 1.9496 -0.0047 5.5577 35 1 2.8628 1.2325 4.5898 36 1 6.0579 -0.1745 5.8740 37 1 5.3494 1.1728 4.9515 38 1 4.8108 0.8548 6.6179 39 1 3.4374 -1.5121 6.9773 40 1 3.2220 -2.4937 5.5082 41 1 4.8490 -2.2579 6.1904 42 1 4.7035 -0.0625 3.0960 43 1 4.5596 -1.8407 3.4397 44 1 1.8823 -1.7992 -1.2115 45 1 3.7641 0.6696 -1.3002 46 1 4.2152 -1.0839 -1.4655 47 1 2.7362 1.1442 -4.5449 48 1 3.6408 1.6721 -3.1058 49 1 5.0506 2.2862 -5.3195 50 1 7.2413 3.8703 -7.2768 51 1 0.8246 -0.6494 -3.1006 52 1 1.3280 0.9819 -2.4749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734113845.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:17 Heat of formation + Delta-G solvation = -31.550084 kcal Electronic energy + Delta-G solvation = -29233.283042 eV Core-core repulsion = 25233.982809 eV Total energy + Delta-G solvation = -3999.300232 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.95479 -40.13719 -38.54299 -37.69412 -35.35373 -33.85218 -31.99306 -31.23555 -30.76720 -29.35706 -27.79843 -26.35060 -26.05473 -25.54721 -24.79660 -23.78105 -21.59941 -20.59125 -19.50681 -19.13573 -18.58875 -17.86955 -17.34850 -16.66923 -16.06888 -15.69945 -15.28007 -15.21313 -14.88272 -14.68340 -14.54637 -14.32158 -14.13345 -13.70912 -13.52346 -13.37103 -13.20349 -13.05632 -12.96922 -12.65828 -12.54739 -12.32783 -12.21256 -11.93295 -11.85191 -11.60860 -11.46669 -11.35126 -11.17450 -11.07310 -10.91932 -10.69468 -10.65581 -10.63428 -10.45528 -10.32526 -10.19278 -9.77909 -9.48235 -9.27127 -8.68240 -8.13923 -7.92890 -6.38839 -3.79409 2.45917 2.96406 3.17951 3.28055 3.35474 3.91453 3.96688 4.06250 4.17459 4.22453 4.28145 4.35013 4.39506 4.56654 4.74004 4.89496 5.00287 5.04297 5.04889 5.18508 5.22779 5.24479 5.27025 5.27623 5.39789 5.41858 5.45786 5.47219 5.49202 5.53786 5.56046 5.64339 5.66998 5.71227 5.76071 5.77211 5.79164 5.82419 5.93296 6.01209 6.03396 6.13735 6.18424 6.30979 6.38167 6.61239 7.20160 7.33717 7.58004 8.07738 8.09500 8.65566 9.21643 9.58282 10.10788 10.79225 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012617 B = 0.002142 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.662502 B =13068.852307 C =14513.768768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.149 3.851 3 H 0.087 0.913 4 N -0.722 5.722 5 C 0.523 3.477 6 O -0.541 6.541 7 C -0.138 4.138 8 C -0.107 4.107 9 C -0.091 4.091 10 C -0.136 4.136 11 C -0.129 4.129 12 C -0.114 4.114 13 C -0.125 4.125 14 C 0.018 3.982 15 N -0.449 5.449 16 C 0.010 3.990 17 C 0.447 3.553 18 O -0.576 6.576 19 N -0.568 5.568 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.020 3.980 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.010 3.990 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.400 0.600 33 H 0.110 0.890 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.103 0.897 45 H 0.067 0.933 46 H 0.090 0.910 47 H 0.087 0.913 48 H 0.057 0.943 49 H 0.391 0.609 50 H 0.270 0.730 51 H 0.091 0.909 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.919 -6.977 23.324 27.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.044 3.956 3 H 0.105 0.895 4 N -0.373 5.373 5 C 0.310 3.690 6 O -0.418 6.418 7 C -0.160 4.160 8 C -0.145 4.145 9 C -0.091 4.091 10 C -0.194 4.194 11 C -0.186 4.186 12 C -0.152 4.152 13 C -0.144 4.144 14 C -0.111 4.111 15 N -0.171 5.171 16 C -0.122 4.122 17 C 0.232 3.768 18 O -0.459 6.459 19 N -0.205 5.205 20 C -0.426 4.426 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.120 4.120 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.235 0.765 33 H 0.128 0.872 34 H 0.088 0.912 35 H 0.114 0.886 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.122 0.878 45 H 0.085 0.915 46 H 0.108 0.892 47 H 0.106 0.894 48 H 0.075 0.925 49 H 0.224 0.776 50 H 0.080 0.920 51 H 0.109 0.891 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.587 -7.260 22.865 26.642 hybrid contribution 0.522 0.775 -0.292 0.979 sum -11.065 -6.485 22.573 25.962 Atomic orbital electron populations 1.22131 0.95052 1.02162 1.02537 1.21049 0.94123 0.97223 0.83206 0.89457 1.46101 1.67387 1.14119 1.09664 1.20515 0.76861 0.87233 0.84397 1.90692 1.49918 1.16116 1.85067 1.22771 0.98413 1.00777 0.94002 1.22954 0.96774 0.99809 0.94966 1.21797 0.96164 0.96391 0.94731 1.21725 0.97663 0.98837 1.01128 1.21605 1.01885 0.95888 0.99192 1.23046 0.93023 1.02852 0.96270 1.23312 0.96976 1.01120 0.92995 1.23975 0.96225 1.01491 0.89381 1.68374 1.01890 1.36027 1.10818 1.22483 0.98042 0.92735 0.98988 1.19697 0.86547 0.86363 0.84180 1.90515 1.68784 1.21448 1.65176 1.41888 1.21747 1.13015 1.43887 1.19740 0.98001 0.99427 1.25450 0.87939 1.25262 0.99884 0.95021 0.97940 1.69624 1.40134 1.03839 1.40881 0.85805 0.81100 0.78780 0.78690 1.19246 1.20765 1.20795 1.23960 0.94221 0.99921 0.93898 0.92390 0.92271 0.91364 0.76550 0.87162 0.91154 0.88612 0.92512 0.92306 0.92472 0.92261 0.92417 0.92223 0.89429 0.90533 0.87845 0.91480 0.89167 0.89429 0.92475 0.77564 0.91983 0.89113 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.29 37.16 0.35 -1.08 16 2 C 0.15 1.48 2.42 -67.93 -0.16 1.31 16 3 H 0.09 1.07 7.37 -51.93 -0.38 0.69 16 4 N -0.72 -6.39 5.08 -53.80 -0.27 -6.66 16 5 C 0.52 5.50 7.33 -10.99 -0.08 5.42 16 6 O -0.54 -7.85 15.56 5.55 0.09 -7.76 16 7 C -0.14 -1.05 3.79 -90.87 -0.34 -1.40 16 8 C -0.11 -0.86 6.56 -25.92 -0.17 -1.03 16 9 C -0.09 -0.61 1.39 -153.69 -0.21 -0.83 16 10 C -0.14 -0.93 9.18 37.16 0.34 -0.59 16 11 C -0.13 -0.69 9.07 37.16 0.34 -0.35 16 12 C -0.11 -0.83 6.77 -25.83 -0.17 -1.01 16 13 C -0.12 -1.32 3.49 -89.69 -0.31 -1.63 16 14 C 0.02 0.26 7.51 -2.77 -0.02 0.24 16 15 N -0.45 -7.42 5.65 -239.76 -1.35 -8.78 16 16 C 0.01 0.17 5.28 -4.97 -0.03 0.15 16 17 C 0.45 10.89 7.83 -10.99 -0.09 10.81 16 18 O -0.58 -16.15 16.01 5.54 0.09 -16.06 16 19 N -0.57 -14.77 5.29 -10.96 -0.06 -14.82 16 20 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 21 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 22 C 0.02 0.55 5.50 -17.46 -0.10 0.45 16 23 N -0.90 -24.98 13.05 55.50 0.72 -24.26 16 24 Si 0.93 21.37 29.55 -169.99 -5.02 16.35 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 C 0.01 0.11 6.57 -2.77 -0.02 0.09 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.56 7.43 -51.93 -0.39 0.17 16 32 H 0.40 2.63 8.60 -40.82 -0.35 2.28 16 33 H 0.11 0.62 7.64 -51.93 -0.40 0.22 16 34 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 35 H 0.10 0.96 7.39 -51.93 -0.38 0.57 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.45 7.98 -51.93 -0.41 0.03 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.06 0.28 7.34 -51.93 -0.38 -0.10 16 41 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.09 0.77 7.94 -51.93 -0.41 0.36 16 43 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 44 H 0.10 1.00 8.14 -51.92 -0.42 0.58 16 45 H 0.07 0.97 7.29 -51.93 -0.38 0.59 16 46 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 47 H 0.09 1.45 8.08 -51.93 -0.42 1.03 16 48 H 0.06 0.95 7.38 -51.93 -0.38 0.57 16 49 H 0.39 9.72 7.90 -40.82 -0.32 9.39 16 50 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 51 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 52 H 0.07 0.75 7.85 -51.93 -0.41 0.35 16 LS Contribution 418.28 15.07 6.30 6.30 Total: -1.00 -34.27 418.28 -9.51 -43.78 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -9.18 Total: 9.92 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -0.83 Total: 1.99 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.96 Total: -54.52 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: 0.18 Total: -23.83 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -34.27 -9.51 -43.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734113845.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.232 kcal (2) G-P(sol) polarization free energy of solvation -34.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds