Wall clock time and date at job start Tue Mar 31 2020 21:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47123 * 2 1 4 4 N 1.46505 * 109.46964 * 120.00110 * 2 1 3 5 5 C 1.34774 * 120.00020 * 274.99732 * 4 2 1 6 6 O 1.21288 * 119.99746 * 0.02562 * 5 4 2 7 7 C 1.50693 * 120.00286 * 180.02562 * 5 4 2 8 8 C 1.53783 * 113.61662 * 180.02562 * 7 5 4 9 9 C 1.53785 * 87.07804 * 219.93292 * 8 7 5 10 10 C 1.53006 * 113.61096 * 139.97884 * 9 8 7 11 11 C 1.53002 * 113.61471 * 270.79457 * 9 8 7 12 12 C 1.53781 * 87.17620 * 25.38900 * 9 8 7 13 13 C 1.53001 * 109.47109 * 239.99994 * 2 1 3 14 14 C 1.53927 * 113.73497 * 156.72933 * 13 2 1 15 15 N 1.47958 * 86.18191 * 221.91919 * 14 13 2 16 16 C 1.46903 * 111.00129 * 137.58015 * 15 14 13 17 17 C 1.50700 * 109.47088 * 90.64086 * 16 15 14 18 18 O 1.21296 * 120.00013 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00114 * 179.97438 * 17 16 15 20 20 C 1.37093 * 119.99968 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00437 * 0.02562 * 20 19 17 22 22 C 1.38958 * 120.00066 * 180.02562 * 20 19 17 23 23 N 1.31417 * 119.99539 * 359.97438 * 22 20 19 24 24 Si 1.86791 * 120.00121 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47427 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47068 * 119.99996 * 24 22 20 27 27 H 1.48506 * 109.47113 * 239.99824 * 24 22 20 28 28 C 1.47955 * 90.76189 * 24.68735 * 15 14 13 29 29 H 1.08998 * 109.47123 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46960 * 299.99959 * 1 2 3 31 31 H 1.09000 * 109.46872 * 60.00223 * 1 2 3 32 32 H 0.96997 * 120.00257 * 95.00184 * 4 2 1 33 33 H 1.09004 * 112.85065 * 311.19853 * 7 5 4 34 34 H 1.08997 * 113.61737 * 105.38359 * 8 7 5 35 35 H 1.09000 * 113.61138 * 334.47499 * 8 7 5 36 36 H 1.09001 * 109.47002 * 181.52532 * 10 9 8 37 37 H 1.08993 * 109.46955 * 301.52970 * 10 9 8 38 38 H 1.09000 * 109.47050 * 61.52798 * 10 9 8 39 39 H 1.08999 * 109.47105 * 298.47603 * 11 9 8 40 40 H 1.09000 * 109.46611 * 58.47476 * 11 9 8 41 41 H 1.08998 * 109.47047 * 178.47668 * 11 9 8 42 42 H 1.08998 * 113.61545 * 89.15547 * 12 9 8 43 43 H 1.08993 * 113.61303 * 220.06004 * 12 9 8 44 44 H 1.09010 * 112.93595 * 288.43397 * 13 2 1 45 45 H 1.08998 * 113.76175 * 336.23668 * 14 13 2 46 46 H 1.09002 * 113.76359 * 107.60415 * 14 13 2 47 47 H 1.08999 * 109.47149 * 210.64419 * 16 15 14 48 48 H 1.08998 * 109.47093 * 330.64237 * 16 15 14 49 49 H 0.97001 * 119.99949 * 359.97438 * 19 17 16 50 50 H 0.96996 * 119.99673 * 179.97438 * 23 22 20 51 51 H 1.09000 * 113.76053 * 220.98939 * 28 15 14 52 52 H 1.09006 * 113.75871 * 89.63003 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1471 -0.0183 2.3572 6 8 1.8582 1.1584 2.4117 7 6 2.6499 -0.7285 3.5874 8 6 2.7388 0.1761 4.8279 9 6 4.0591 -0.5399 5.1582 10 6 5.1476 0.3956 5.6885 11 6 3.8789 -1.7909 6.0205 12 6 4.1839 -0.8405 3.6552 13 6 2.0400 -0.7213 -1.2493 14 6 3.4669 -0.3155 -1.6598 15 7 2.9605 -0.3147 -3.0500 16 6 3.4682 0.8453 -3.7947 17 6 4.7626 0.4788 -4.4739 18 8 5.2172 -0.6389 -4.3501 19 7 5.4147 1.3927 -5.2196 20 6 6.5925 1.0595 -5.8370 21 1 6.9977 0.0645 -5.7262 22 6 7.2650 2.0019 -6.6054 23 7 6.7717 3.2124 -6.7407 24 14 8.8694 1.5476 -7.4472 25 1 9.2069 0.1345 -7.1401 26 1 8.7225 1.7141 -8.9155 27 1 9.9549 2.4335 -6.9548 28 6 1.5823 -0.0740 -2.5687 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6318 1.1527 33 1 2.1358 -1.6720 3.7714 34 1 1.9496 -0.0047 5.5577 35 1 2.8628 1.2325 4.5898 36 1 6.0579 -0.1745 5.8740 37 1 5.3494 1.1728 4.9515 38 1 4.8108 0.8548 6.6179 39 1 3.4374 -1.5121 6.9773 40 1 3.2220 -2.4937 5.5082 41 1 4.8490 -2.2579 6.1904 42 1 4.7035 -0.0625 3.0960 43 1 4.5596 -1.8407 3.4397 44 1 1.8823 -1.7992 -1.2115 45 1 3.7641 0.6696 -1.3002 46 1 4.2152 -1.0839 -1.4655 47 1 2.7362 1.1442 -4.5449 48 1 3.6408 1.6721 -3.1058 49 1 5.0506 2.2862 -5.3195 50 1 7.2413 3.8703 -7.2768 51 1 0.8246 -0.6494 -3.1006 52 1 1.3280 0.9819 -2.4749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734113845.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:16 Heat of formation + Delta-G solvation = -56.648811 kcal Electronic energy + Delta-G solvation = -29234.371404 eV Core-core repulsion = 25233.982809 eV Total energy + Delta-G solvation = -4000.388595 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.77337 -41.17256 -39.77300 -39.13667 -36.34320 -35.89661 -33.33833 -32.80811 -31.59995 -30.47414 -28.26352 -27.62308 -26.96421 -26.67445 -25.85944 -25.00870 -22.62690 -21.43077 -21.00087 -20.39307 -19.89880 -19.16558 -18.18469 -17.81203 -17.56081 -16.64081 -16.54809 -16.47132 -16.22101 -15.87452 -15.63507 -15.44682 -15.09610 -14.97718 -14.78335 -14.27765 -14.05515 -13.97526 -13.80034 -13.70437 -13.61567 -13.53997 -13.34024 -12.99952 -12.74960 -12.72677 -12.67821 -12.46559 -12.42906 -12.13885 -12.07034 -11.85348 -11.77573 -11.74959 -11.65113 -11.51978 -11.27484 -11.01925 -10.60522 -10.39672 -10.11714 -10.02907 -9.62167 -8.48388 -5.97342 1.34994 1.39720 1.54411 1.64340 2.03635 2.20111 2.27425 2.76906 3.17486 3.29723 3.44437 3.47844 3.58263 3.62921 3.71941 3.76963 4.06203 4.16063 4.18277 4.22720 4.31909 4.39249 4.41835 4.45790 4.50025 4.51882 4.53152 4.70838 4.75325 4.77051 4.80806 4.83096 4.86324 4.88609 4.94856 5.00014 5.04492 5.17599 5.20245 5.22621 5.25556 5.31575 5.38699 5.42284 5.45833 5.56223 5.63030 5.88661 6.07355 6.58751 6.60564 7.11273 7.30420 7.54528 8.10832 8.69426 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012617 B = 0.002142 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.662502 B =13068.852307 C =14513.768768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.154 3.846 3 H 0.062 0.938 4 N -0.712 5.712 5 C 0.519 3.481 6 O -0.587 6.587 7 C -0.130 4.130 8 C -0.113 4.113 9 C -0.084 4.084 10 C -0.138 4.138 11 C -0.126 4.126 12 C -0.114 4.114 13 C -0.096 4.096 14 C 0.010 3.990 15 N -0.481 5.481 16 C 0.023 3.977 17 C 0.442 3.558 18 O -0.618 6.618 19 N -0.577 5.577 20 C -0.332 4.332 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.994 3.006 25 H -0.273 1.273 26 H -0.269 1.269 27 H -0.270 1.270 28 C 0.015 3.985 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.414 0.586 33 H 0.140 0.860 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.042 0.958 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.093 0.907 44 H 0.121 0.879 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.108 0.892 48 H 0.073 0.927 49 H 0.395 0.605 50 H 0.278 0.722 51 H 0.109 0.891 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.923 -8.213 23.921 28.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.049 3.951 3 H 0.080 0.920 4 N -0.363 5.363 5 C 0.307 3.693 6 O -0.467 6.467 7 C -0.151 4.151 8 C -0.151 4.151 9 C -0.084 4.084 10 C -0.195 4.195 11 C -0.183 4.183 12 C -0.152 4.152 13 C -0.116 4.116 14 C -0.119 4.119 15 N -0.204 5.204 16 C -0.109 4.109 17 C 0.229 3.771 18 O -0.504 6.504 19 N -0.215 5.215 20 C -0.462 4.462 21 H 0.096 0.904 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.818 3.182 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.195 1.195 28 C -0.113 4.113 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.251 0.749 33 H 0.158 0.842 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.111 0.889 44 H 0.139 0.861 45 H 0.078 0.922 46 H 0.090 0.910 47 H 0.127 0.873 48 H 0.091 0.909 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.127 0.873 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.613 -8.504 23.462 27.962 hybrid contribution 0.825 1.173 -0.466 1.508 sum -11.788 -7.331 22.996 26.861 Atomic orbital electron populations 1.22068 0.93600 1.03221 1.02288 1.20902 0.95068 0.95896 0.83256 0.91988 1.46034 1.66595 1.14717 1.08976 1.21050 0.76071 0.86780 0.85419 1.90674 1.52043 1.18195 1.85829 1.22851 0.98606 1.01427 0.92202 1.22925 0.98012 0.98499 0.95628 1.21801 0.95134 0.96869 0.94605 1.21739 0.98215 0.98698 1.00893 1.21605 1.02520 0.95047 0.99121 1.23024 0.92627 1.03003 0.96554 1.23123 0.93678 1.01991 0.92773 1.23981 0.98136 1.00781 0.88957 1.68342 1.04694 1.35590 1.11756 1.22356 0.95000 0.93950 0.99599 1.20808 0.87899 0.85363 0.83016 1.90475 1.70346 1.23187 1.66359 1.41977 1.21572 1.13524 1.44413 1.19688 0.99809 0.99020 1.27660 0.90442 1.26076 1.02833 0.94752 0.97829 1.69684 1.41280 1.04373 1.40940 0.84854 0.77116 0.78240 0.78021 1.19786 1.19462 1.19548 1.24083 0.92023 1.01266 0.93944 0.90609 0.93769 0.90416 0.74896 0.84183 0.90150 0.91377 0.91775 0.93851 0.92015 0.91769 0.91308 0.91731 0.91642 0.88861 0.86085 0.92153 0.90955 0.87348 0.90886 0.77106 0.91303 0.87280 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.29 71.98 0.67 -1.71 16 2 C 0.15 2.85 2.42 44.99 0.11 2.96 16 3 H 0.06 1.51 7.37 -2.39 -0.02 1.49 16 4 N -0.71 -11.67 5.08 -442.53 -2.25 -13.92 16 5 C 0.52 10.71 7.33 87.66 0.64 11.35 16 6 O -0.59 -17.55 15.56 -3.05 -0.05 -17.60 16 7 C -0.13 -1.81 3.79 -10.96 -0.04 -1.85 16 8 C -0.11 -1.76 6.56 31.12 0.20 -1.56 16 9 C -0.08 -1.05 1.39 -51.65 -0.07 -1.12 16 10 C -0.14 -1.87 9.18 71.98 0.66 -1.21 16 11 C -0.13 -1.05 9.07 71.98 0.65 -0.40 16 12 C -0.11 -1.57 6.77 31.18 0.21 -1.36 16 13 C -0.10 -1.85 3.49 -10.15 -0.04 -1.88 16 14 C 0.01 0.30 7.51 86.40 0.65 0.94 16 15 N -0.48 -15.44 5.65 -912.47 -5.16 -20.60 16 16 C 0.02 0.81 5.28 85.56 0.45 1.27 16 17 C 0.44 21.97 7.83 87.66 0.69 22.65 16 18 O -0.62 -35.72 16.01 -3.08 -0.05 -35.77 16 19 N -0.58 -30.71 5.29 -306.98 -1.62 -32.33 16 20 C -0.33 -19.40 9.68 84.04 0.81 -18.59 16 21 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 22 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 23 N -0.92 -50.80 13.05 21.67 0.28 -50.52 16 24 Si 0.99 43.79 29.55 68.60 2.03 45.81 16 25 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 28 C 0.02 0.33 6.57 86.40 0.57 0.89 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 1.06 7.43 -2.39 -0.02 1.05 16 32 H 0.41 4.50 8.60 -92.71 -0.80 3.70 16 33 H 0.14 1.14 7.64 -2.39 -0.02 1.12 16 34 H 0.08 1.07 8.10 -2.39 -0.02 1.05 16 35 H 0.07 1.46 7.39 -2.39 -0.02 1.44 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.04 0.70 7.98 -2.39 -0.02 0.68 16 38 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.07 0.44 7.34 -2.39 -0.02 0.42 16 41 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.06 1.20 7.94 -2.39 -0.02 1.18 16 43 H 0.09 0.97 8.10 -2.39 -0.02 0.95 16 44 H 0.12 1.97 8.14 -2.38 -0.02 1.95 16 45 H 0.06 1.78 7.29 -2.39 -0.02 1.76 16 46 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 47 H 0.11 3.41 8.08 -2.39 -0.02 3.39 16 48 H 0.07 2.38 7.38 -2.39 -0.02 2.36 16 49 H 0.40 19.97 7.90 -92.71 -0.73 19.23 16 50 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 51 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 52 H 0.08 1.57 7.85 -2.38 -0.02 1.55 16 Total: -1.00 -76.85 418.28 -0.79 -77.64 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: -0.61 Total: 37.27 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 6.63 Total: 10.00 kcal Atomic # 7 Polarization: -108.62 SS G_CDS: -8.74 Total: -117.36 kcal Atomic # 8 Polarization: -53.27 SS G_CDS: -0.10 Total: -53.37 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -76.85 -0.79 -77.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734113845.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.992 kcal (2) G-P(sol) polarization free energy of solvation -76.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds