Wall clock time and date at job start Tue Mar 31 2020 21:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46961 * 2 1 4 4 N 1.46499 * 109.47055 * 120.00151 * 2 1 3 5 5 C 1.34777 * 119.99884 * 275.00381 * 4 2 1 6 6 O 1.21283 * 120.00303 * 359.97438 * 5 4 2 7 7 C 1.50705 * 119.99786 * 179.97438 * 5 4 2 8 8 H 1.09000 * 112.90770 * 287.24263 * 7 5 4 9 9 C 1.53953 * 113.66798 * 58.54418 * 7 5 4 10 10 C 1.53782 * 87.10819 * 139.88821 * 9 7 5 11 11 C 1.53775 * 87.08334 * 334.64138 * 10 9 7 12 12 C 1.52999 * 113.61502 * 139.98501 * 11 10 9 13 13 C 1.53007 * 113.61143 * 270.79817 * 11 10 9 14 14 C 1.52996 * 109.47528 * 240.00061 * 2 1 3 15 15 C 1.53933 * 113.73804 * 156.72776 * 14 2 1 16 16 N 1.47959 * 86.18173 * 221.92580 * 15 14 2 17 17 C 1.46902 * 111.00166 * 137.58429 * 16 15 14 18 18 C 1.50700 * 109.46994 * 70.63622 * 17 16 15 19 19 O 1.21293 * 120.00284 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99658 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99765 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00261 * 0.02562 * 21 20 18 23 23 C 1.38947 * 119.99795 * 179.97438 * 21 20 18 24 24 N 1.31408 * 119.99971 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 120.00113 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47085 * 89.99895 * 25 23 21 27 27 H 1.48502 * 109.47182 * 210.00006 * 25 23 21 28 28 H 1.48502 * 109.46856 * 329.99667 * 25 23 21 29 29 C 1.47951 * 90.76581 * 24.68493 * 16 15 14 30 30 H 1.09006 * 109.47341 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47503 * 300.00037 * 1 2 3 32 32 H 1.08999 * 109.46932 * 60.00292 * 1 2 3 33 33 H 0.97003 * 120.00131 * 94.99600 * 4 2 1 34 34 H 1.09004 * 113.53583 * 25.33996 * 9 7 5 35 35 H 1.08993 * 113.66491 * 254.45725 * 9 7 5 36 36 H 1.09005 * 113.61155 * 220.08401 * 10 9 7 37 37 H 1.09000 * 113.61172 * 89.19341 * 10 9 7 38 38 H 1.09002 * 109.46744 * 200.85930 * 12 11 10 39 39 H 1.09001 * 109.47087 * 80.85992 * 12 11 10 40 40 H 1.09002 * 109.47161 * 320.85713 * 12 11 10 41 41 H 1.09000 * 109.46828 * 300.07764 * 13 11 10 42 42 H 1.08995 * 109.46974 * 60.07694 * 13 11 10 43 43 H 1.08995 * 109.47165 * 180.02562 * 13 11 10 44 44 H 1.08998 * 112.94018 * 288.44010 * 14 2 1 45 45 H 1.09008 * 113.75563 * 336.23963 * 15 14 2 46 46 H 1.08994 * 113.76078 * 107.60553 * 15 14 2 47 47 H 1.09002 * 109.47055 * 190.63607 * 17 16 15 48 48 H 1.09002 * 109.46702 * 310.63517 * 17 16 15 49 49 H 0.96999 * 120.00086 * 0.02562 * 20 18 17 50 50 H 0.97006 * 120.00292 * 180.02562 * 24 23 21 51 51 H 1.09002 * 113.76207 * 220.99007 * 29 16 15 52 52 H 1.09002 * 113.85678 * 89.64015 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1469 -0.0183 2.3571 6 8 1.8589 1.1586 2.4116 7 6 2.6487 -0.7289 3.5878 8 1 1.9136 -1.4127 4.0122 9 6 4.0447 -1.3544 3.4142 10 6 4.3504 -0.8779 4.8441 11 6 3.2866 0.2106 4.6246 12 6 2.4045 0.4614 5.8493 13 6 3.8454 1.5007 4.0207 14 6 2.0401 -0.7212 -1.2492 15 6 3.4670 -0.3154 -1.6597 16 7 2.9605 -0.3145 -3.0499 17 6 3.4683 0.8455 -3.7946 18 6 4.9421 0.6692 -4.0552 19 8 5.5132 -0.3252 -3.6599 20 7 5.6254 1.6160 -4.7283 21 6 6.9663 1.4559 -4.9650 22 1 7.4750 0.5708 -4.6123 23 6 7.6706 2.4317 -5.6594 24 7 8.9557 2.2780 -5.8867 25 14 6.7906 3.9622 -6.2700 26 1 6.8483 5.0162 -5.2256 27 1 7.4515 4.4533 -7.5059 28 1 5.3726 3.6337 -6.5641 29 6 1.5823 -0.0739 -2.5687 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2489 -1.6318 1.1526 34 1 4.6498 -0.8637 2.6518 35 1 4.0282 -2.4392 3.3096 36 1 5.3594 -0.4842 4.9667 37 1 4.0815 -1.6026 5.6126 38 1 1.4765 0.9401 5.5366 39 1 2.9305 1.1109 6.5490 40 1 2.1781 -0.4880 6.3345 41 1 4.6035 1.9145 4.6857 42 1 4.2924 1.2838 3.0505 43 1 3.0384 2.2223 3.8949 44 1 1.8824 -1.7991 -1.2116 45 1 3.7640 0.6698 -1.3000 46 1 4.2152 -1.0838 -1.4654 47 1 2.9389 0.9281 -4.7438 48 1 3.3086 1.7511 -3.2094 49 1 5.1686 2.4111 -5.0447 50 1 9.4475 2.9595 -6.3712 51 1 0.8246 -0.6493 -3.1006 52 1 1.3263 0.9815 -2.4744 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734122162.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:29 Heat of formation + Delta-G solvation = -47.938353 kcal Electronic energy + Delta-G solvation = -29952.347413 eV Core-core repulsion = 25952.336532 eV Total energy + Delta-G solvation = -4000.010881 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.89125 -41.29904 -39.85119 -38.91928 -36.32858 -35.93856 -33.80365 -32.80795 -31.47525 -30.61910 -28.33919 -27.89628 -27.49942 -26.80400 -25.42662 -23.49398 -23.08070 -21.56339 -21.27068 -20.70764 -20.24465 -19.26047 -18.03857 -17.84449 -17.51843 -16.86141 -16.59709 -16.41566 -16.19762 -15.88001 -15.50719 -15.36506 -14.99961 -14.94596 -14.71935 -14.41549 -14.35563 -14.09407 -13.94117 -13.82021 -13.63686 -13.28108 -13.16224 -13.14497 -12.91496 -12.87128 -12.63955 -12.47683 -12.45105 -12.20931 -12.00931 -11.82542 -11.78316 -11.73378 -11.64165 -11.52496 -11.30690 -10.99409 -10.44946 -10.42040 -10.28220 -10.07180 -9.65074 -8.44473 -6.05412 1.27124 1.32280 1.41357 1.72721 1.91318 2.19794 2.23594 2.65477 3.10102 3.12747 3.40318 3.42301 3.57176 3.63871 3.75155 3.83453 4.01578 4.11640 4.19173 4.25472 4.30210 4.34614 4.38997 4.44916 4.49187 4.51624 4.56868 4.67458 4.77252 4.77631 4.82211 4.83221 4.87158 4.92806 4.98747 5.00056 5.03840 5.12762 5.20196 5.23382 5.28476 5.33520 5.39270 5.49876 5.50432 5.55663 5.63351 5.88111 6.00845 6.55945 6.64007 6.84417 7.35571 7.35642 7.92277 8.73189 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012778 B = 0.002502 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.790512 B =11188.753290 C =12259.964800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.155 3.845 3 H 0.060 0.940 4 N -0.715 5.715 5 C 0.519 3.481 6 O -0.576 6.576 7 C -0.125 4.125 8 H 0.140 0.860 9 C -0.127 4.127 10 C -0.127 4.127 11 C -0.069 4.069 12 C -0.131 4.131 13 C -0.120 4.120 14 C -0.101 4.101 15 C 0.019 3.981 16 N -0.482 5.482 17 C 0.018 3.982 18 C 0.450 3.550 19 O -0.609 6.609 20 N -0.593 5.593 21 C -0.328 4.328 22 H 0.055 0.945 23 C -0.015 4.015 24 N -0.933 5.933 25 Si 0.964 3.036 26 H -0.258 1.258 27 H -0.273 1.273 28 H -0.232 1.232 29 C 0.019 3.981 30 H 0.074 0.926 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.412 0.588 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.045 0.955 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.031 0.969 43 H 0.054 0.946 44 H 0.120 0.880 45 H 0.051 0.949 46 H 0.064 0.936 47 H 0.121 0.879 48 H 0.081 0.919 49 H 0.389 0.611 50 H 0.280 0.720 51 H 0.115 0.885 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.799 -4.610 19.756 29.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.050 3.950 3 H 0.079 0.921 4 N -0.367 5.367 5 C 0.307 3.693 6 O -0.455 6.455 7 C -0.146 4.146 8 H 0.157 0.843 9 C -0.165 4.165 10 C -0.164 4.164 11 C -0.070 4.070 12 C -0.188 4.188 13 C -0.177 4.177 14 C -0.120 4.120 15 C -0.110 4.110 16 N -0.205 5.205 17 C -0.113 4.113 18 C 0.238 3.762 19 O -0.493 6.493 20 N -0.235 5.235 21 C -0.458 4.458 22 H 0.073 0.927 23 C -0.214 4.214 24 N -0.574 5.574 25 Si 0.783 3.217 26 H -0.183 1.183 27 H -0.198 1.198 28 H -0.155 1.155 29 C -0.110 4.110 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.248 0.752 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.086 0.914 37 H 0.124 0.876 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.050 0.950 43 H 0.073 0.927 44 H 0.138 0.862 45 H 0.069 0.931 46 H 0.083 0.917 47 H 0.139 0.861 48 H 0.099 0.901 49 H 0.224 0.776 50 H 0.089 0.911 51 H 0.133 0.867 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.280 -4.914 19.499 29.278 hybrid contribution 0.658 1.400 -0.404 1.599 sum -20.621 -3.514 19.095 28.323 Atomic orbital electron populations 1.22057 0.93455 1.03156 1.02325 1.20890 0.95095 0.95806 0.83256 0.92141 1.46067 1.66926 1.14601 1.09107 1.20996 0.76191 0.86869 0.85268 1.90665 1.51486 1.17658 1.85714 1.23064 0.98744 0.99536 0.93281 0.84276 1.22867 0.93707 1.01944 0.97979 1.23045 0.98689 0.97651 0.97010 1.21708 0.96260 0.94006 0.94978 1.21698 0.98620 1.02420 0.96099 1.21550 1.00169 0.97010 0.98958 1.23195 0.93640 1.02009 0.93178 1.23744 0.97763 1.00246 0.89235 1.68409 1.04766 1.35308 1.11968 1.22463 0.91342 0.94892 1.02644 1.20867 0.90126 0.83670 0.81565 1.90533 1.71768 1.31562 1.55392 1.42068 1.08509 1.20768 1.52134 1.18990 0.84279 1.06923 1.35563 0.92709 1.26111 0.96281 1.02233 0.96726 1.69800 1.09218 1.36975 1.41409 0.85382 0.79909 0.77445 0.78915 1.18283 1.19751 1.15487 1.24096 0.91810 1.01447 0.93619 0.90720 0.93805 0.90245 0.75198 0.91621 0.88401 0.91395 0.87594 0.93590 0.92229 0.90691 0.92411 0.94957 0.92745 0.86226 0.93060 0.91734 0.86136 0.90114 0.77567 0.91092 0.86712 0.89640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.29 71.98 0.67 -1.56 16 2 C 0.15 2.84 2.41 44.99 0.11 2.95 16 3 H 0.06 1.47 7.37 -2.39 -0.02 1.45 16 4 N -0.72 -12.19 5.04 -442.54 -2.23 -14.42 16 5 C 0.52 10.85 6.49 87.66 0.57 11.42 16 6 O -0.58 -16.62 13.68 -3.04 -0.04 -16.67 16 7 C -0.13 -1.85 3.66 -10.95 -0.04 -1.89 16 8 H 0.14 1.39 8.10 -2.39 -0.02 1.37 16 9 C -0.13 -1.72 7.27 31.18 0.23 -1.49 16 10 C -0.13 -1.60 7.23 31.12 0.22 -1.37 16 11 C -0.07 -1.13 1.20 -51.66 -0.06 -1.19 16 12 C -0.13 -1.81 9.18 71.98 0.66 -1.15 16 13 C -0.12 -2.65 7.51 71.98 0.54 -2.11 16 14 C -0.10 -1.90 3.49 -10.15 -0.04 -1.94 16 15 C 0.02 0.57 6.31 86.41 0.55 1.11 16 16 N -0.48 -14.38 5.95 -912.40 -5.43 -19.81 16 17 C 0.02 0.58 5.31 85.56 0.45 1.03 16 18 C 0.45 21.02 7.59 87.66 0.67 21.68 16 19 O -0.61 -34.51 15.13 -3.07 -0.05 -34.56 16 20 N -0.59 -28.85 5.09 -306.98 -1.56 -30.41 16 21 C -0.33 -19.65 10.16 84.04 0.85 -18.80 16 22 H 0.05 3.89 7.39 -2.91 -0.02 3.87 16 23 C -0.01 -0.84 5.50 84.93 0.47 -0.37 16 24 N -0.93 -57.05 13.96 21.66 0.30 -56.75 16 25 Si 0.96 39.58 27.74 68.60 1.90 41.48 16 26 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 28 H -0.23 -8.04 6.52 99.48 0.65 -7.39 16 29 C 0.02 0.35 6.59 86.41 0.57 0.92 16 30 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 0.97 7.43 -2.39 -0.02 0.95 16 33 H 0.41 5.02 8.60 -92.71 -0.80 4.22 16 34 H 0.07 1.19 7.61 -2.38 -0.02 1.18 16 35 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 0.94 8.10 -2.38 -0.02 0.92 16 37 H 0.11 0.89 7.99 -2.39 -0.02 0.87 16 38 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.07 0.72 7.98 -2.39 -0.02 0.70 16 41 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.03 0.82 6.83 -2.39 -0.02 0.80 16 43 H 0.05 1.42 6.87 -2.39 -0.02 1.41 16 44 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.05 1.64 7.60 -2.38 -0.02 1.62 16 46 H 0.06 2.25 8.09 -2.39 -0.02 2.23 16 47 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 48 H 0.08 2.18 7.69 -2.39 -0.02 2.16 16 49 H 0.39 15.73 5.76 -92.71 -0.53 15.20 16 50 H 0.28 15.58 8.31 -92.70 -0.77 14.81 16 51 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 52 H 0.09 1.38 7.72 -2.39 -0.02 1.36 16 Total: -1.00 -82.86 409.21 -1.16 -84.02 By element: Atomic # 1 Polarization: 40.34 SS G_CDS: -0.47 Total: 39.87 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 6.42 Total: 7.24 kcal Atomic # 7 Polarization: -112.47 SS G_CDS: -8.92 Total: -121.38 kcal Atomic # 8 Polarization: -51.14 SS G_CDS: -0.09 Total: -51.22 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 1.90 Total: 41.48 kcal Total: -82.86 -1.16 -84.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734122162.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.078 kcal (2) G-P(sol) polarization free energy of solvation -82.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds